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Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W310-4.

GRAMM-X public web server for protein-protein docking.

Author information

1
Center for Bioinformatics, The University of Kansas, 2030 Becker Drive, Lawrence, KS 66047, USA. andrey@ku.edu

Abstract

Protein docking software GRAMM-X and its web interface (http://vakser.bioinformatics.ku.edu/resources/gramm/grammx) extend the original GRAMM Fast Fourier Transformation methodology by employing smoothed potentials, refinement stage, and knowledge-based scoring. The web server frees users from complex installation of database-dependent parallel software and maintaining large hardware resources needed for protein docking simulations. Docking problems submitted to GRAMM-X server are processed by a 320 processor Linux cluster. The server was extensively tested by benchmarking, several months of public use, and participation in the CAPRI server track.

PMID:
16845016
PMCID:
PMC1538913
DOI:
10.1093/nar/gkl206
[Indexed for MEDLINE]
Free PMC Article

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