Format

Send to

Choose Destination
Bioinformatics. 2006 Jul 1;22(13):1668-9. Epub 2006 Apr 27.

An online literature mining tool for protein phosphorylation.

Author information

1
Protein Information Resource, Department of Biochemistry and Molecular and Cellular Biology, Georgetown University Medical Center Washington, DC 20007, USA.

Abstract

A web-based version of the RLIMS-P literature mining system was developed for online mining of protein phosphorylation information from MEDLINE abstracts. The online tool presents extracted phosphorylation objects (phosphorylated proteins, phosphorylation sites and protein kinases) in summary tables and full reports with evidence-tagged abstracts. The tool further allows mapping of phosphorylated proteins to protein entries in the UniProt Knowledgebase based on PubMed ID and/or protein name. The literature mining, coupled with database association, allows retrieval of rich biological information for the phosphorylated proteins and facilitates database annotation of phosphorylation features.

PMID:
16644790
DOI:
10.1093/bioinformatics/btl159
[Indexed for MEDLINE]

Supplemental Content

Full text links

Icon for Silverchair Information Systems
Loading ...
Support Center