Format

Send to

Choose Destination
BMC Bioinformatics. 2006 Mar 10;7:125.

Optimized Particle Swarm Optimization (OPSO) and its application to artificial neural network training.

Author information

1
Johann Wolfgang Goethe-Universität, Institut für Organische Chemie und Chemische Biologie, Siesmayerstrasse 70, D-60323 Frankfurt, Germany. meissner@chemie.uni-frankfurt.de

Abstract

BACKGROUND:

Particle Swarm Optimization (PSO) is an established method for parameter optimization. It represents a population-based adaptive optimization technique that is influenced by several "strategy parameters". Choosing reasonable parameter values for the PSO is crucial for its convergence behavior, and depends on the optimization task. We present a method for parameter meta-optimization based on PSO and its application to neural network training. The concept of the Optimized Particle Swarm Optimization (OPSO) is to optimize the free parameters of the PSO by having swarms within a swarm. We assessed the performance of the OPSO method on a set of five artificial fitness functions and compared it to the performance of two popular PSO implementations.

RESULTS:

Our results indicate that PSO performance can be improved if meta-optimized parameter sets are applied. In addition, we could improve optimization speed and quality on the other PSO methods in the majority of our experiments. We applied the OPSO method to neural network training with the aim to build a quantitative model for predicting blood-brain barrier permeation of small organic molecules. On average, training time decreased by a factor of four and two in comparison to the other PSO methods, respectively. By applying the OPSO method, a prediction model showing good correlation with training-, test- and validation data was obtained.

CONCLUSION:

Optimizing the free parameters of the PSO method can result in performance gain. The OPSO approach yields parameter combinations improving overall optimization performance. Its conceptual simplicity makes implementing the method a straightforward task.

PMID:
16529661
PMCID:
PMC1464136
DOI:
10.1186/1471-2105-7-125
[Indexed for MEDLINE]
Free PMC Article

Supplemental Content

Full text links

Icon for BioMed Central Icon for PubMed Central
Loading ...
Support Center