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J Proteome Res. 2006 Jan;5(1):112-21.

Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.

Author information

Fred Hutchinson Cancer Research Center, Seattle, Washington, LabKey Software, Seattle, Washington 98109-1024, USA.

Erratum in

  • J Proteome Res. 2006 Apr;5(4):1024. Whitaker, Jeffrey [corrected to Whiteaker, Jeffrey].


The open-source Computational Proteomics Analysis System (CPAS) contains an entire data analysis and management pipeline for Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) proteomics, including experiment annotation, protein database searching and sequence management, and mining LC-MS/MS peptide and protein identifications. CPAS architecture and features, such as a general experiment annotation component, installation software, and data security management, make it useful for collaborative projects across geographical locations and for proteomics laboratories without substantial computational support.

[Indexed for MEDLINE]

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