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Bioinformatics. 2005 Oct 15;21(20):3931-2. Epub 2005 Aug 16.

MESHI: a new library of Java classes for molecular modeling.

Author information

1
Department of Computer Science, Ben-Gurion University, Beer-Sheva, Israel.

Abstract

Adapting a modular and object-oriented approach in the design of molecular modeling packages may reduce the software development barrier between ideas and their programed applications. Towards this goal we developed MESHI, a new, strictly object-oriented, molecular modeling suite written in Java. MESHI provides a comprehensive library of extendable classes for all the essential components of molecular modeling: molecular and geometry elements, energy functions and optimization methods.

AVAILABILITY:

MESHI and its related documentation are freely available at http://www.cs.bgu.ac.il/~meshi; the MESHI API is available at http://www.cs.bgu.ac.il/~meshi/API CONTACT: keasar@cs.bgu.ac.il

SUPPLEMENTARY INFORMATION:

The Supplementary information includes (1) a detailed description of several key packages and classes, and (2) a brief presentation of results achieved by using the MESHI application--Beautify--in the CASP6 experiment.

PMID:
16105898
DOI:
10.1093/bioinformatics/bti630
[Indexed for MEDLINE]
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