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Bioinformatics. 2005 Sep 15;21(18):3683-5. Epub 2005 Aug 2.

Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis.

Author information

1
Paterson Institute for Cancer Research, Manchester M20 4BX, UK.

Abstract

Quality Control is a fundamental aspect of successful microarray data analysis. Simpleaffy is a BioConductor package that provides access to a variety of QC metrics for assessing the quality of RNA samples and of the intermediate stages of sample preparation and hybridization. Simpleaffy also offers fast implementations of popular algorithms for generating expression summaries and detection calls.

AVAILABILITY:

Simpleaffy can be downloaded from http://www.bioconductor.org.

SUPPLEMENTARY INFORMATION:

Additional information can be found on the supplementary website located at http://bioinformatics.picr.man.ac.uk.

PMID:
16076888
DOI:
10.1093/bioinformatics/bti605
[Indexed for MEDLINE]

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