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Bioinformatics. 2005 Sep 15;21(18):3697-9. Epub 2005 Jul 28.

SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization.

Author information

1
Department of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC 27708, USA.

Abstract

SUMMARY:

SpA is a web-accessible system for the management, visualization and statistical analysis of T-cell receptor spectratype data. Users upload data from their spectratype analyzers to SpA, which saves the raw data and user-defined supplementary covariates to a secure database. The statistical engine performs several data analyses and statistical summaries. The visualization engine displays spectratype histograms in a Java applet and in an image file suitable for download. All of these results are also saved to the database and remain accessible to the user. Additional statistical tools specific to the analysis of multiple spectratypes are also available through the SpA interface.

AVAILABILITY:

The service is freely accessible via the web at http://www.duke.edu/~kepler/spa.html. Additional technical support and specialized statistical analysis and consultation are available by arrangement with the authors and, depending on the service requested, may be subject to fee.

PMID:
16051675
DOI:
10.1093/bioinformatics/bti600
[Indexed for MEDLINE]

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