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Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W650-3.

The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.

Author information

1
Center for Bioinformatics and Division of Genetics, IBHV, The Royal Veterinary and Agricultural University Grønnegårdsvej 3, DK-1870 Frederiksberg C, Denmark.

Abstract

Foldalign is a Sankoff-based algorithm for making structural alignments of RNA sequences. Here, we present a web server for making pairwise alignments between two RNA sequences, using the recently updated version of foldalign. The server can be used to scan two sequences for a common structural RNA motif of limited size, or the entire sequences can be aligned locally or globally. The web server offers a graphical interface, which makes it simple to make alignments and manually browse the results. The web server can be accessed at http://foldalign.kvl.dk.

PMID:
15980555
PMCID:
PMC1160234
DOI:
10.1093/nar/gki473
[Indexed for MEDLINE]
Free PMC Article

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