Format

Send to

Choose Destination
Bioinformatics. 2005 Jul 15;21(14):3195-7. Epub 2005 May 6.

MEPD: a resource for medaka gene expression patterns.

Author information

1
EMBL Heidelberg Meyerhofstrasse 1, D-69117 Heidelberg, Germany. henrich@embl.de

Abstract

The Medaka Expression Pattern Database (MEPD) is a database for gene expression patterns determined by in situ hybridization in the small freshwater fish medaka (Oryzias latipes). Data have been collected from various research groups and MEPD is developing into a central expression pattern depository within the medaka community. Gene expression patterns are described by images and terms of a detailed medaka anatomy ontology of over 4000 terms, which we have developed for this purpose and submitted to Open Biological Ontologies. Sequences have been annotated via BLAST match results and using Gene Ontology terms. These new features will facilitate data analyses using bioinformatics approaches and allow cross-species comparisons of gene expression patterns. Presently, MEPD has 19,757 entries, for 1024 of them the expression pattern has been determined.

PMID:
15879458
DOI:
10.1093/bioinformatics/bti478
[Indexed for MEDLINE]

Supplemental Content

Full text links

Icon for Silverchair Information Systems
Loading ...
Support Center