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Nucleic Acids Res. 2005 Jan 1;33(Database issue):D212-5.

The ProDom database of protein domain families: more emphasis on 3D.

Author information

1
Laboratoire des Interactions Plantes-Microorganismes, INRA/CNRS, BP 27, F-31326 Castanet-Tolosan Cedex, France.

Abstract

ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (3D) information from the SCOP database; a completely redesigned web interface (http://www.toulouse.inra.fr/prodom.html); visualization of ProDom domains on 3D structures; coupling of ProDom analysis with the Geno3D homology modelling server; Bayesian inference of evolutionary scenarios for ProDom families. In addition, we have developed ProDom-SG, a ProDom-based server dedicated to the selection of candidate proteins for structural genomics.

PMID:
15608179
PMCID:
PMC539988
DOI:
10.1093/nar/gki034
[Indexed for MEDLINE]
Free PMC Article

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