Format

Send to

Choose Destination
Bioinformatics. 2005 Mar 1;21(5):683-4. Epub 2004 Oct 12.

Database driven test case generation for protein-protein docking.

Author information

1
Applied Computer Science, Faculty of Technology, Bielefeld University D-33594 Bielefeld, Germany. fzoellne@techfak.uni-bielefeld.de

Abstract

We present a method for automatic test case generation for protein-protein docking. A consensus-type approach is proposed processing the whole PDB and classifying protein structures into complexes and unbound proteins by combining information from three different approaches (current PDB-at-a-glance classification, search of complexes by sequence identical unbound structures and chain naming). Out of this classification test cases are generated automatically. All calculations were run on the database. The information stored is available via a web interface. The user can choose several criteria for generating his own subset out of our test cases, e.g. for testing docking algorithms.

AVAILABILITY:

http://bibiserv.techfak.uni-bielefeld.de/agt-sdp/

CONTACT:

fzoellne@techfak.uni-bielefeld.de.

PMID:
15479711
DOI:
10.1093/bioinformatics/bti061
[Indexed for MEDLINE]

Supplemental Content

Full text links

Icon for Silverchair Information Systems
Loading ...
Support Center