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Bioinformatics. 2005 Feb 15;21(4):554-6. Epub 2004 Sep 28.

arrayMagic: two-colour cDNA microarray quality control and preprocessing.

Author information

1
Department of Molecular Genome Analysis, German Cancer Research Center INF 580, Heidelberg, 69120, Germany. a.buness@dkfz.de

Abstract

arrayMagic is a software package for quality control and preprocessing of two-colour cDNA microarray data. The automated analysis pipeline comprises data import, normalization, replica merging, quality diagnostics and data export. The script-based processing combines reproducibility and flexibility at high-throughput and provides quality-assured and preprocessed microarray data to high-level follow-up analysis.

AVAILABILITY:

The R package arrayMagic is available with BSD license at http://www.bioconductor.org

CONTACT:

a.buness@dkfz.de

SUPPLEMENTARY INFORMATION:

The package contains documentation in the form of manual pages and a vignette with a guided tour of a typical workflow.

PMID:
15454413
DOI:
10.1093/bioinformatics/bti052
[Indexed for MEDLINE]

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