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Bioinformatics. 2005 Jan 15;21(2):266-8. Epub 2004 Sep 17.

SNPP: automating large-scale SNP genotype data management.

Author information

1
Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University Changsha, Hunan 410081, China.

Abstract

To manage high-throughput single nucleotide polymorphism (SNP) genotyping data efficiently, we developed a dynamic general database management system-SNPP (SNP Processor). It provides several functions, including data importing with comparison, Mendelian inheritance check within pedigrees, data compiling and exporting. Furthermore, SNPP may generate files for repeat genotyping and transform them into files that can be executed by a liquid handling system.

AVAILABILITY:

http://orclinux.creighton.edu/snpp/

CONTACT:

lanjuanzhao@creighton.edu

PMID:
15377503
DOI:
10.1093/bioinformatics/bth486
[Indexed for MEDLINE]

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