Structure of superoxide reductase bound to ferrocyanide and active site expansion upon X-ray-induced photo-reduction

Structure. 2004 Sep;12(9):1729-40. doi: 10.1016/j.str.2004.07.013.

Abstract

Some sulfate-reducing and microaerophilic bacteria rely on the enzyme superoxide reductase (SOR) to eliminate the toxic superoxide anion radical (O2*-). SOR catalyses the one-electron reduction of O2*- to hydrogen peroxide at a nonheme ferrous iron center. The structures of Desulfoarculus baarsii SOR (mutant E47A) alone and in complex with ferrocyanide were solved to 1.15 and 1.7 A resolution, respectively. The latter structure, the first ever reported of a complex between ferrocyanide and a protein, reveals that this organo-metallic compound entirely plugs the SOR active site, coordinating the active iron through a bent cyano bridge. The subtle structural differences between the mixed-valence and the fully reduced SOR-ferrocyanide adducts were investigated by taking advantage of the photoelectrons induced by X-rays. The results reveal that photo-reduction from Fe(III) to Fe(II) of the iron center, a very rapid process under a powerful synchrotron beam, induces an expansion of the SOR active site.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Crystallography, X-Ray
  • Desulfovibrio / enzymology
  • Ferrocyanides / chemistry*
  • Ferrocyanides / metabolism
  • Light*
  • Macromolecular Substances
  • Models, Molecular
  • Mutation
  • Oxidation-Reduction
  • Oxidoreductases / chemistry*
  • Oxidoreductases / genetics
  • Oxidoreductases / metabolism
  • Protein Binding
  • Protein Structure, Tertiary*
  • Superoxides / chemistry
  • X-Rays

Substances

  • Bacterial Proteins
  • Ferrocyanides
  • Macromolecular Substances
  • Superoxides
  • Oxidoreductases
  • superoxide reductase
  • hexacyanoferrate II

Associated data

  • PDB/1VZG
  • PDB/1VZH
  • PDB/1VZI