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Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W150-3.

RDfolder: a web server for prediction of RNA secondary structure.

Author information

1
Beijing Institute of Basic Medical Sciences, PO Box 130(3), Beijing 100850, People's Republic of China.

Abstract

Prediction of RNA secondary structure is important in the functional analysis of RNA molecules. The RDfolder web server described in this paper provides two methods for prediction of RNA secondary structure: random stacking of helical regions and helical regions distribution. The random stacking method predicts secondary structure by Monte Carlo simulations. The method of helical regions distribution predicts secondary structure based on the helices that appear most frequently in the set of structures, which are generated by the random stacking method. The RDfolder web server can be accessed at http://rna.cbi.pku.edu.cn.

PMID:
15215369
PMCID:
PMC441583
DOI:
10.1093/nar/gkh445
[Indexed for MEDLINE]
Free PMC Article

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