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Bioinformatics. 2004 Nov 22;20(17):3258-60. Epub 2004 Jun 16.

TMRPres2D: high quality visual representation of transmembrane protein models.

Author information

1
Department of Cell Biology and Biophysics, Faculty of Biology, University of Athens, Panepistimiopolis, Athens 157 01, Greece.

Abstract

The 'TransMembrane protein Re-Presentation in 2-Dimensions' (TMRPres2D) tool, automates the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins. Protein sequence data and structural information may be acquired from public protein knowledge bases, emanate from prediction algorithms, or even be defined by the user. Several important biological and physical sequence attributes can be embedded in the graphical representation.

PMID:
15201184
DOI:
10.1093/bioinformatics/bth358
[Indexed for MEDLINE]

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