DNA binding of TEF-1 and VITO-1 to different MCAT DNA motifs. Electrophoretic mobility shift assays (EMSA) with in vitro translated TEF-1 (lanes 1–3), TEF-1 and VITO-1 (lanes 4–6), VITO-1 (lanes 7–9) using oligo bs01 (lanes 1, 4, 7 and 10), oligo bs02 (lanes 2, 5 and 8) and oligo bs03 (lanes 3, 6 and 9). Equimolar concentrations of in vitro translated proteins were loaded as estimated from incorporation of 35S per methionine residue present in each protein and densitometric scanning. Between 4 and 8% of the volume of coupled in vitro transcription/translation reaction was used for an EMSA reaction if not indicated otherwise. An unstable, non-specific complex (R) that sometimes formed with bs01 and which was also present in unprimed reticulocyte lysate (lane 10) was clearly distinguishable from TEF-1-dependent complexes (TEF). Addition of VITO-1 led to a reduction in complex formation of TEF-1 with all three binding DNA fragments containing single MCAT motifs (lanes 4–6). No complex formation was noted when VITO-1 was used alone (lanes 7–9). To demonstrate specificity of TEF-1 DNA binding, increasing amounts of unlabelled Bs01 were incubated with the same labelled binding site (lanes 10–15). Lane 11, 0 ng; lane 12, 25 ng (10×); lane 13, 250 ng (100×); lane 14, 500 ng (200×); lane 15, 1250 ng (500×); lane 16, 2500 ng (1000×). FO, free or unbound oligonucleotides.