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Bioinformatics. 2003 Dec 12;19(18):2475-6.

MREPATT: detection and analysis of exact consecutive repeats in genomic sequences.

Author information

  • 1Cepba-IBM Research Institute, Universitat Polit├Ęcnica de Catalunya. C/Jordi Girona, 1-3, C6, 08034 Barcelona, Spain.

Abstract

We have developed a program to determine the number, length and position of exact consecutive repeats of short sequences in DNA fragments or whole genomes. The program also gives the statistical significance of results by comparing them with those expected for a random sequence generated according to a Markovian model.

AVAILABILITY:

MREPATT can be accessed on line at http://www.lsi.upc.es/~alggen under the RESEARCH and SEARCH links.

PMID:
14668235
[PubMed - indexed for MEDLINE]
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