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Bioinformatics. 2003 Mar 1;19(4):541-2.

3MOTIF: visualizing conserved protein sequence motifs in the protein structure database.

Author information

1
Department of Biochemistry, B400 Beckman Center, Stanford University, CA 94305-5307, USA.

Abstract

SUMMARY:

3MOTIF is a web application that visually maps conserved sequence motifs onto three-dimensional protein structures in the Protein Data Bank (PDB; Berman et al., Nucleic Acids Res., 28, 235-242, 2000). Important properties of motifs such as conservation strength and solvent accessible surface area at each position are visually represented on the structure using a variety of color shading schemes. Users can manipulate the displayed motifs using the freely available Chime plugin.

AVAILABILITY:

http://motif.stanford.edu/3motif/

PMID:
12611811
[Indexed for MEDLINE]

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