Proposed criteria for classification of new genotypes of mumps virus

Scand J Infect Dis. 2002;34(5):355-7. doi: 10.1080/00365540110080043.

Abstract

The nucleotide sequences of a 300 bp segment carrying the small hydrophobic (SH) protein gene of a large number of virus strains, belonging to 10 different mumps virus genotypes denoted A-J, were compared. When virus strains belonging to the same genotype were compared intra-genotypically, a variation in the range 2-4% was recorded. The level of inter-genotypical variation was higher (8-18%). A consistent finding was the more pronounced variation found when the A genotype was compared to the B-J genotypes than when the B-J genotypes were compared among themselves. A similar relatively more pronounced genetic variation between the A and B-D genotypes has also been found previously with the hemagglutinin-neuraminidase and fusion protein genes. It is concluded that the establishment of a new genotype should be founded on a nucleotide variation of the SH gene of > or = 6% in relation to previously described genotypes.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Classification / methods
  • Genetic Variation / genetics*
  • Genotype
  • Humans
  • Molecular Sequence Data
  • Mumps virus / classification*
  • Mumps virus / genetics
  • Phylogeny
  • Sequence Analysis, DNA
  • Viral Proteins / genetics*

Substances

  • Viral Proteins
  • small hydrophobic protein, Mumps virus