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Bioinformatics. 2002 Feb;18(2):331-2.

INCLUSive: integrated clustering, upstream sequence retrieval and motif sampling.

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1
ESAT_ SISTA/COSIC, KULeuven, Kasteelpark Arenberg 10, 3001 Leuven-Heverlee, Belgium. Gert.Thijs@esat.kuleuven.ac.be

Abstract

INCLUSive allows automatic multistep analysis of microarray data (clustering and motif finding). The clustering algorithm (adaptive quality-based clustering) groups together genes with highly similar expression profiles. The upstream sequences of the genes belonging to a cluster are automatically retrieved from GenBank and can be fed directly into Motif Sampler, a Gibbs sampling algorithm that retrieves statistically over-represented motifs in sets of sequences, in this case upstream regions of co-expressed genes.

PMID:
11847086
[Indexed for MEDLINE]
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