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Cell Mol Life Sci. 2001 Dec;58(14):2136-43.

Substrate binding and catalytic mechanism of class B beta-lactamases: a molecular modelling study.

Author information

1
Service de Physique Expérimentale, Institut de Physique, Université de Liège, Sart-Tilman, Belgium.

Abstract

Increased resistance to beta-lactam antibiotics is mainly due to beta-lactamases whose production by pathogenic bacteria makes their broad activity spectrum especially frightening. X-ray structures of several zinc beta-lactamases have revealed the coordination of the two metal ions, but their mode of action remains unclear. Geometry optimisation of stable complexes along the reaction pathway of benzylpenicillin hydrolysis highlighted a proton shuttle occurring from D120 of the Bacillus cereus beta-lactamase to the beta-lactam nitrogen via Zn2 which is central to the network. First, the Zn1 ion has a structural role maintaining Zn-bound waters, WAT1 and WAT2, either directly or through the Zn1 tetrahedrally coordinated histidine ligands. The Zn2 ion has a more catalytic role, stabilising the tetrahedral intermediate, accepting the beta-lactam nitrogen atom as a ligand. The role of Zn2 and the flexibility in the coordination geometry of both Zn ions is of crucial importance for catalysis.

PMID:
11814063
DOI:
10.1007/pl00000843
[Indexed for MEDLINE]

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