Preorganized secondary structure as an important determinant of fast protein folding

Nat Struct Biol. 2001 Jun;8(6):552-8. doi: 10.1038/88626.

Abstract

The folding and unfolding kinetics of the B-domain of staphylococcal protein A, a small three-helix bundle protein, were probed by NMR. The lineshape of a single histidine resonance was fit as a function of denaturant to give folding and unfolding rate constants. The B-domain folds extremely rapidly in a two-state manner, with a folding rate constant of 120,000 s-1, making it one of the fastest-folding proteins known. Diffusion-collision theory predicts folding and unfolding rate constants that are in good agreement with the experimental values. The apparent rate constant as a function of denaturant ('chevron plot') is predicted within an order of magnitude. Our results are consistent with a model whereby fast-folding proteins utilize a diffusion-collision mechanism, with the preorganization of one or more elements of secondary structure in the unfolded protein.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Circular Dichroism
  • Diffusion
  • Guanidine / pharmacology
  • Isomerism
  • Kinetics
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Proline / chemistry
  • Proline / metabolism
  • Protein Denaturation / drug effects
  • Protein Folding*
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Staphylococcal Protein A / chemistry*
  • Staphylococcal Protein A / metabolism*
  • Thermodynamics

Substances

  • Staphylococcal Protein A
  • Proline
  • Guanidine