Format

Send to

Choose Destination
See comment in PubMed Commons below
Nucleic Acids Res. 2001 Jan 1;29(1):219-20.

PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB).

Author information

  • 1Computational Biology Research Laboratory, Electrotechnical Laboratory, 1-1-4 Umezono, Tsukuba,Ibaraki 305-5868, Japan. tnoguchi@etl.go.jp

Abstract

PDB-REPRDB is a database of representative protein chains from the Protein Data Bank (PDB). The previous version of PDB-REPRDB provided 48 representative sets, whose similarity criteria were predetermined, on the WWW. The current version is designed so that the user may obtain a quick selection of representative chains from PDB. The selection of representative chains can be dynamically configured according to the user's requirement. The WWW interface provides a large degree of freedom in setting parameters, such as cut-off scores of sequence and structural similarity. One can obtain a representative list and classification data of protein chains from the system. The current database includes 20 457 protein chains from PDB entries (August 6, 2000). The system for PDB-REPRDB is available at the Parallel Protein Information Analysis system (PAPIA) WWW server (http://www.rwcp.or.jp/papia/).

PMID:
11125096
PMCID:
PMC29793
[PubMed - indexed for MEDLINE]
Free PMC Article
PubMed Commons home

PubMed Commons

0 comments
How to join PubMed Commons

    Supplemental Content

    Full text links

    Icon for PubMed Central
    Loading ...
    Support Center