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Bioinformatics. 2000 Apr;16(4):400-1.

Detecting hypermutations in viral sequences with an emphasis on G --> A hypermutation.

Author information

1
Theoretical Biology and Biophysics, Los Alamos National Laboratories, MS K710 Los Alamos, NM 87544, USA. pxr@t10.lanl.gov

Abstract

SUMMARY:

This program compares sequence sets to a reference sequence, tallies G --> A hypermutations, and presents the results in various tables and graphs, which include dinucleotide context, summaries of all observed nucleotide changes, and stop codons introduced by hypermutation.

AVAILABILITY:

www.hiv.lanl.gov/HYPERMUT/hypermut.html

PMID:
10869039
DOI:
10.1093/bioinformatics/16.4.400
[Indexed for MEDLINE]

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