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Nucleic Acids Res. 2000 Jan 1;28(1):377-9.

The University of Minnesota Biocatalysis/Biodegradation database: microorganisms, genomics and prediction.

Author information

1
Center for Biodegradation Research, Department of Laboratory Medicine, University of Minnesota, Minneapolis, MN 55455, USA. lynda@email.labmed.umn.edu

Abstract

The University of Minnesota Biocatalysis/Biodegradation Database (http://www.labmed.umn.edu/umbbd/ ) begins its fifth year having met its initial goals. It contains approximately 100 pathways for microbial catabolic metabolism of primarily xenobiotic organic compounds, including information on approximately 650 reactions, 600 compounds and 400 enzymes, and containing approximately 250 microorganism entries. It includes information on most known microbial catabolic reaction types and the organic functional groups they transform. Having reached its first goals, it is ready to move beyond them. It is poised to grow in many different ways, including mirror sites; fold prediction for its sequenced enzymes; closer ties to genome and microbial strain databases; and the prediction of biodegradation pathways for compounds it does not contain.

PMID:
10592280
PMCID:
PMC102401
[Indexed for MEDLINE]
Free PMC Article

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