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ID: 209284

PCLA_209284   nucleotide-binding protein

nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription

Statistics

Proteins:935
Conserved in:Bacteria
Total genera:225
Total organisms:930
Putative Paralogs:4
Locuses: trpF, h16_A3060, yajQ, yajQ [C], trpF2
COG functional category: Function unknown

Related clusters [8]

ClusterNameDistanceProteinMedian length (aa)Genomes

Genome groups (clades)

Clade ID Name Proteins in Cluster Total Annotated Genomes Proteins per Genome (median)
19668Escherichia-Shigella2810985067
19669Citrobacter-Salmonella153634517
19542Pseudomonas13245314
19543Pseudomonas11765498
21108Yersinia <bacteria>10194128
19671Enterobacter10144517
19546Pseudomonas10295947
19507Acinetobacter92093787
19463Burkholderia9166923
19549Pseudomonas9154234
19624Vibrio-unclassified Vibrionales9304433
22137Xanthomonas9193965
19709Aggregatibacter9222220
19710Haemophilus9281792
19678Cronobacter8154269
21655Pseudomonas8225732
19619Aeromonas7194132
19485Stenotrophomonas-unclassified Xanthomonadaceae7124070
19673Enterobacter-Klebsiella-Raoultella6195483
19680Pectobacterium674459
19639Vibrio61823672
19697Actinobacillus6182143
19442Achromobacter666008
19460Burkholderia5496288
19544Pseudomonas585714
19611Shewanella584006
21163Vibrio5174678
19681Dickeya554141
19487Xanthomonas5784088
19469Burkholderia576717
19684Yersinia <bacteria>42024017
19633Vibrio455021
19653Proteus <enterobacteria>473661
19585Glaciecola-Pseudoalteromonas454568
19512Acinetobacter4203834
19514Moraxella catarrhalis4121844
19537Pseudomonas4455939
19691Serratia474950
19698Haemophilus441985
19355Legionella pneumophila4103033
19382Methyloversatilis-unclassified Rhodocyclaceae443902
19748Candidatus Pelagibacter ubique441354
19540Pseudomonas464620
19631Vibrio4115258
19599Pseudoalteromonas-unclassified Alteromonadales494085
19672Enterobacter-Klebsiella41135551
19472Ralstonia solanacearum494956
21235Enterobacter-Klebsiella-Kosakonia434825
21126Citrobacter4124768
19422Variovorax456272
19662Erwinia4143721
19476Cupriavidus-Ralstonia456201
19492Xanthomonas334211
19510Acinetobacter393231
21985Acinetobacter3133644
19660Pantoea374581
19626Vibrio vulnificus364396
21194Vibrio3144586
19474Cupriavidus-unclassified Betaproteobacteria (miscellaneous)335287
21110Pantoea364424
19449Herbaspirillum354868
19656Providencia343967
19706Pasteurella3162141
20718Dehalococcoides mccartyi371454
19641Vibrio393522
19646Photobacterium334437
19664Edwardsiella <enterobacteria>363404
21938Acinetobacter392835
21086Haemophilus352010
19471Ralstonia354890
19587Alteromonas macleodii363829
19601Pseudoalteromonas353676
19502Acinetobacter384543
21692Pseudomonas354589
21591Burkholderia347459
19466Burkholderia386291
21291Vibrio234273
21308Pseudomonas235494
19802Azospirillum226059
19368Methylotenera mobilis222334
19417Acidovorax223461
19418Acidovorax234664
19520Alcanivorax222752
19500Acinetobacter2133225
21675Pseudomonas225045
19536Pseudomonas224759
19299Desulfovibrio223178
19651Xenorhabdus nematophila224060
19551Marinobacter233885
19687Rahnella235057
19701Histophilus somni221793
19473Cupriavidus227046
19432Rubrivivax223897
19732sulfur-oxidizing symbionts223182
21195Stenotrophomonas maltophilia223380
21229Morganella morganii223486
21236Cedecea-Enterobacter224432
19648Photorhabdus224351
19591Alishewanella233360
21084Actinobacillus minor222049
22654Taylorella asinigenitalis221414
19505Acinetobacter253262
19380Thauera233940
19407Pseudogulbenkiania223924
19412Comamonas testosteroni255018
22640Serratia-unclassified Gammaproteobacteria (miscellaneous)224788
19654Providencia stuartii224080
19638Vibrio234411
19606Shewanella224181
19622Aliivibrio fischeri243802
19481Rhodanobacter233690
19490Xanthomonas274231
19504Acinetobacter radioresistens282931
21187Burkholderia2310122
19440Bordetella2173552
19370Methylovorus222709
19354Coxiella burnetii281826
21585Burkholderia227180
21653Acinetobacter222921
19578Candidatus Hamiltonella defensa221712
19628Vibrio234499
21146Enterobacter-Yokenella224393
19593Pseudoalteromonas spongiae214183
21179Alcaligenes223667
21233Pantoea224866
19545Pseudomonas286070
19558Halomonas233883
19744Thioalkalivibrio222891
19692Gallibacterium anatis222347
19694Haemophilus parasuis221992
19643Photobacterium profundum225339
21700Janthinobacterium-unclassified Oxalobacteraceae225974
19410Thiomonas223134
19461Burkholderia262625
19458Burkholderia227250
21231Serratia marcescens244805
21833unclassified Alphaproteobacteria (miscellaneous)22771
21649Acinetobacter222761
21650Pseudomonas115126
21651Pseudomonas sp. CFII64115837
22583Marinomonas sp. MWYL1114416
22584Acinetobacter122899
22585Acinetobacter123287
22586Acinetobacter bouvetii123110
22617Oceanimonas sp. GK1113190
22634Haemophilus ducreyi111698
22635Actinobacillus capsulatus112455
22636Bibersteinia trehalosi112245
22637Pasteurella bettyae112177
22667Herbaspirillum sp. CF444114973
19358Legionella longbeachae123460
19374Nitrosomonas eutropha112473
19375Nitrosospira multiformis112732
19376Nitrosomonas sp. AL212112841
19377Nitrosomonas sp. Is79A3113273
19408Chromobacterium violaceum114398
21232Pantoea sp. A4114802
19411Hydrogenophaga sp. PBC114963
19425Albidiferax ferrireducens114403
19426Polaromonas sp. CF318114751
19427Polaromonas naphthalenivorans114879
19428Leptothrix cholodnii114343
19745Ectothiorhodospira sp. PHS-1112789
19779Candidatus Puniceispirillum marinum112542
21300Halomonas zhanjiangensis113682
21584Legionella shakespearei113000
21597Erwinia toletana114868
21598Dickeya113961
21600Photobacterium sp. AK15114904
21614Algicola sagamiensis114044
21615Pseudoalteromonas luteoviolacea113680
21631Thioalkalivibrio nitratireducens113762
21701Janthinobacterium sp. CG3115379
21714Leeia oryzae113522
21715Chitiniphilus shinanonensis113595
21716beta proteobacterium L13113514
21733zeta proteobacterium SCGC AB-137-C09112281
21734zeta proteobacterium SCGC AB-137-I08112206
19441Bordetella petrii114933
19525Luminiphilus syltensis112923
19527marine gamma proteobacterium HTCC2148113825
19862Parvularcula bermudensis112687
21096Serratia odorifera115121
21449Burkholderia sp. RPE64116490
21832alpha proteobacterium SCGC AB-629-F11112241
19644Photobacterium damselae113498
19311Desulfomicrobium baculatum113421
19642Grimontia sp. AK16114956
19695Mannheimia haemolytica172682
19712Colwellia psychrerythraea114882
19725Methylophaga aminisulfidivorans113174
19726Methylophaga sp. JAM1113010
19727Methylophaga sp. JAM7112689
19728Nitrosococcus halophilus113770
19729Nitrosococcus watsonii112880
19742Thioalkalivibrio thiocyanoxidans113446
19743Thiorhodospira sibirica112933
20629Pedobacter saltans113780
20630Mucilaginibacter paludis116864
20631Pedobacter heparinus114249
21332Chryseobacterium taeanense115945
21346Pedobacter arcticus113653
21347Pedobacter agri114603
21965Pedobacter sp. BAL39115096
19559Halomonas sp. TD01113820
19560Halomonas sp. GFAJ-1113274
19561Marinomonas sp. MED121114798
19575Succinivibrionaceae bacterium WG-1112444
19576Kangiella aquimarina112496
21664Marinobacterium rhizophilum114741
21666Dasania marina113742
21667Microbulbifer variabilis114419
21681Xanthomonas translucens133708
21683Xanthomonas fragariae113554
21697Burkholderia sp. JPY347115955
21698Massilia niastensis115735
21180Herbaspirillum sp. JC206113971
21181Herbaspirillum lusitanum114566
21183Herbaspirillum sp. YR522114607
21197Hydrocarboniphaga effusa114474
21199Acinetobacter153001
21213Pseudomonas resinovorans115795
21214Halomonas smyrnensis113223
19594Pseudoalteromonas144606
19609Shewanella amazonensis113638
19610Shewanella baltica194377
19661Erwinia billingiae114915
21165Azospirillum brasilense117539
19592Pseudoalteromonas tunicata114488
19627Vibrio shilonii115298
21594Avibacterium paragallinarum112619
21596Erwinia tracheiphila114395
21605Colwellia piezophila114608
21610Rheinheimera perlucida113806
21612Aeromonas molluscorum113943
21619Methylomicrobium buryatense114447
21621Methylosarcina fibrata114554
21626Methylophaga lonarensis112536
21630Thioalkalivibrio thiocyanodenitrificans113467
21644Moraxella boevrei112436
22571Kangiella koreensis112630
22587Acinetobacter sp. ANC 3994113305
22589Rheinheimera nanhaiensis113730
22607Xanthomonas gardneri114818
22612Glaciecola polaris114728
22614Methylophilus methylotrophus112735
22623Thauera linaloolentis113836
22630Legionella anisa113847
22639Serratia marcescens114349
22641Plautia stali symbiont113459
19356Legionella drancourtii113959
21887Moritella dasanensis114255
22071Hymenobacter aerophilus113705
22648Grimontia hollisae113553
22655Bordetella avium113371
22657Pseudoalteromonas agarivorans113982
22666Duganella zoogloeoides115366
22673Pseudomonas sp. M1116048
19372Methylophilales bacterium HTCC2181111336
19379Aromatoleum aromaticum114478
19381Azoarcus sp. BH72113981
19388Gallionella capsiferriformans112853
19406Laribacter hongkongensis113205
19415Verminephrobacter eiseniae114911
19424Ramlibacter tataouinensis113879
19429Methylibium petroleiphilum114359
19747Candidatus Pelagibacter sp. HTCC7211111447
19749alpha proteobacterium HIMB114111321
20626Solitalea canadensis114304
19445Limnobacter sp. MED105113244
19447Oxalobacter formigenes112076
21192Rhodanobacter sp. 115113915
21201Alcanivorax dieselolei114388
21203gamma proteobacterium BDW918113793
21219Catenovulum agarivorans114157
21226Enterovibrio calviensis134866
21237Enterobacteriaceae bacterium LSJC7114276
21662Osedax symbiont Rs1114383
21669Hahella ganghwensis116076
21671Marinobacter santoriniensis113691
21678Dyella ginsengisoli114023
21687Caldimonas manganoxidans113313
21694Pseudomonas fuscovaginae115776
21696Burkholderia kururiensis116309
21710Bordetella sp. FB-8113800
21719Methylotenera sp. 1P/1112605
21721Nitrosospira sp. APG3113144
21728Thiobacillus thioparus113140
19431Burkholderiales bacterium JOSHI_001114891
19438Pusillimonas sp. T7-7113751
19506Acinetobacter ursingii143299
19513Enhydrobacter aerosaccus112573
19531Microbulbifer agarilyticus113178
20717Dehalogenimonas lykanthroporepellens111619
20742Denitrovibrio acetiphilus112901
21067Aeromonas salmonicida134326
21103alpha proteobacterium HIMB59111493
19497Thiomicrospira crunogena112187
19454beta proteobacterium CB112102
19456Burkholderia rhizoxinica113859
19688Serratia symbiotica112120
21169Legionella sp. LegM113394
21176Limnohabitans sp. Rim28113379
19613Shewanella frigidimarina113990
19615Ferrimonas balearica113781
19554Marinobacter124201
19563Marinomonas posidonica113489
19565Neptuniibacter caesariensis113686
19574Succinatimonas hippei112169
19588Alteromonas sp. SN2114342
19597Pseudoalteromonas haloplanktis113483
19640Vibrio metschnikovii113034
19288Mariprofundus ferrooxydans122671
19297Desulfovibrio alaskensis113220
19304Desulfovibrio salexigens113807
19658Pantoea sp. At-9b115760
19663Hafnia-unclassified Enterobacteriaceae (miscellaneous)124078
19713Psychromonas sp. CNPT3112578
19731Beggiatoa alba113440
19733Thiorhodovibrio sp. 970114691
19738Thiocystis violascens114192
21780Robiginitomaculum antarcticum112676
19538Pseudomonas sp. S9114352
19414Verminephrobacter aporrectodeae114822
19421Acidovorax radicis115040
19423Hylemonella gracilis113341
19387Sideroxydans lithotrophicus112977
22665Massilia timonae115096
22674Pseudomonas fulva114459
19357Fluoribacter dumoffii123287
19371beta proteobacterium KB13111317
19373Nitrosomonas europaea112375
19800Phaeospirillum molischianum113768
20552Chitinophaga pinensis117179
21279Vibrio caribbenthicus114023
21593Pasteurella pneumotropica112084
21604Psychromonas ossibalaenae114583
21611Aeromonas diversa113707
21613Agarivorans albus114397
21618Methylomonas sp. MK1114789
21620Methylovulum miyakonense114401
21627Thiomicrospira arctica112290
21638Thioflavicoccus mobilis113528
21652Acinetobacter123202
21654Acinetobacter rudis113609
22029Magnetospirillum sp. SO-1114630
22574zeta proteobacterium SCGC AB-133-C04111374
22579Polynucleobacter necessarius112074
22588Acinetobacter gerneri114174
22606Pseudoxanthomonas suwonensis113068
22613Glaciecola nitratireducens113653
22629Limnohabitans sp. Rim47112926
22631Moraxella macacae111822
22638Xenorhabdus bovienii114045
19596Pseudoalteromonas citrea114436
19607Shewanella sediminis114493
19616Oceanimonas smirnovii113104
19623Vibrio nigripulchritudo115769
21170Sutterella wadsworthensis112327
21184Ralstonia sp. PBA113512
21186Pandoraea114454
21193Dyella japonica114146
19548Azotobacter vinelandii134986
19555Chromohalobacter salexigens113298
19557Halomonas sp. KM-1114584
19562Marinomonas mediterranea114118
19566Marinobacterium stanieri114009
19580Idiomarina sp. A28L112298
19589Rheinheimera sp. A13L113941
19666Shimwellia blattae123779
19298Desulfovibrio vulgaris133214
19307Desulfovibrio africanus123560
19714Psychromonas ingrahamii113530
19721Methylomicrobium album113738
19730Nitrosococcus oceani122995
19682Yersinia ruckeri113352
21661Thalassolituus oleivorans113634
21663Amphritea japonica113484
21668Gilvimarinus chinensis113634
21670Marinobacter nanhaiticus114732
21677Rudaea cellulosilytica113748
21686Thiomonas sp. FB-6113817
21695Cupriavidus sp. HPC(L)114929
21711Bordetella holmesii133173
21718Methylophilus122798
21720Methylotenera122455
21722Methyloversatilis sp. NVD113731
21727Thauera123864
21202Alcanivorax hongdengensis113416
21209Pseudomonas putida115834
21220Gayadomonas joobiniege113439
21225Vibrio genomosp. F6113818
21227Enterovibrio norvegicus134574
21354Pontibacter roseus114047
21743Desulfovibrio hydrothermalis113543
19437Advenella kashmirensis113933
19446Oxalobacter formigenes112125
19448Janthinobacterium lividum114311
19455Polynucleobacter necessarius111507
19457Candidatus Burkholderia kirkii112189
19498Thioalkalimicrobium aerophilum112063
21579Burkholderia oklahomensis126954
21820alpha proteobacterium SCGC AAA536-G10112218
22111Balneola vulgaris112464
22647Aliivibrio123510
22649Halomonas stevensii113388
19532gamma proteobacterium IMCC1989112844
19866Parvibaculum lavamentivorans113580
19702Actinobacillus succinogenes112077
19703Mannheimia succiniciproducens112357
19718Methylomonas methanica114435
19720Methylobacter tundripaludum114194
19734Thiocapsa marina114915
19735Marichromatium purpuratum113279
19736Allochromatium vinosum113211
19737Thiorhodococcus drewsii114731
20638Cytophaga aurantiaca113841
21405Cupriavidus pinatubonensis116434
21740Desulfovibrio desulfuricans113167
21976Acinetobacter1133315
19534Saccharophagus degradans113999
19535Teredinibacter turnerae164258
19552Marinobacter algicola114112
19553Marinobacter hydrocarbonoclasticus123783
19567Reinekea blandensis114236
19568Bermanella marisrubri113301
19583Glaciecola pallidula114036
19584Glaciecola punicea112883
19550Hahella chejuensis116751
19586Glaciecola sp. HTCC2999112226
19602Shewanella loihica113855
19603Shewanella benthica114158
19617Tolumonas auensis113126
21676Pseudomonas thermotolerans113518
21689Brachymonas chironomi112375
21691Curvibacter lanceolatus116253
19501Acinetobacter163363
19483Pseudoxanthomonas sp. GW2113038
19484Pseudoxanthomonas spadix113147
19533Cellvibrio japonicus113708
21091Providencia burhodogranariea113888
21104alpha proteobacterium HIMB5111431
21826Kiloniella laminariae114280
22074Niabella aurantiaca115443
22075Segetibacter koreensis115259
22107Arcticibacter svalbardensis114309
22645Brenneria sp. EniD312114386
22658Pseudoalteromonas rubra114891
22675Pseudomonas sp. HYS115261
22676Pseudomonas pseudoalcaligenes115703
19367Methylotenera versatilis112752
21709Pusillimonas noertemannii113579
21723Uliginosibacterium gangwonense114660
21724Azoarcus sp. KH32C115176
21725Azoarcus toluclasticus115415
21726Thauera sp. 63113955
22744Pontibacter sp. BAB1700114044
22745Cytophaga hutchinsonii113770
19434Lautropia mirabilis112665
19435Taylorella equigenitalis131540
19450Collimonas fungivorans114429
19451Oxalobacteraceae bacterium IMCC9480114019
19452Herminiimonas arsenicoxydans113283
19453Janthinobacterium sp. Marseille113695
21172Acidovorax sp. CF316116718
21188Sulfuricella denitrificans113116
21189Rhodanobacter fulvus113400
21190Rhodanobacter spathiphylli113437
21204Simiduia agarivorans113812
21205Cellvibrio sp. BR114304
21206Pseudomonas luteola114425
21208Pseudomonas sp. M47T1115675
21222Vibrio rumoiensis113076
21223Vibrio breoganii133716
21224Vibrio genomosp. F10143796
21238Moritella marina124108
21240Cycloclasticus122247
21672Endozoicomonas elysicola114768
19750Candidatus Pelagibacter sp. IMCC9063111447
19753Magnetococcus marinus113594
19801Magnetospirillum magneticum114515
19369Methylobacillus flagellatus112609
19383Candidatus Accumulibacter phosphatis114438
19384Dechloromonas aromatica114155
19385Azospira oryzae113432
19386Thiobacillus denitrificans112826
19416Alicycliphilus denitrificans124484
19804Rhodospirillum centenum113984
20553Niabella soli113946
20554Niastella koreensis117171
21590Succinimonas amylolytica113413
21592Pseudoalteromonas haloplanktis114350
21606Glaciecola psychrophila125023
21608Salinimonas chungwhensis113673
21609Glaciecola lipolytica114327
21622Methylobacter marinus114592
21639Lamprocystis purpurea115935
21657Kushneria aurantia113489
21658Halomonas jeotgali112536
21659Halomonas lutea114221
22043Shewanella violacea114336
22576Thioalkalimicrobium cyclicum111664
22577Thiobacillus denitrificans113514
22592Shewanella woodyi114865
22594Shewanella denitrificans113727
22611Glaciecola arctica115330
22625Acidovorax sp. MR-S7114674
22626Acidovorax delafieldii114890
22627Acidovorax124677
22628Polaromonas sp. JS666115437
22642Enterobacter sp. 638114236
22643Enterobacteriaceae bacterium strain FGI 57114320
22644Escherichia hermannii114159

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Protein Table

Clade IDOrganismProtein nameAccessionLocus_tagLength (aa) UniProtKB / SwissProtIdentical groupBLINK

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