NCBI

Multiple Sequence Alignment Viewer 1.4.0

Help page

Welcome to NCBI Multiple Sequence Alignment Viewer 1.4.0

To get started click on the at the upper right to review the Help documentation.



Example Links:

Protein alignment, no master
This link provides a look at protein multiple alignment with no master sequence set.
Protein alignment, master set to ACI28628
This link provides a look at protein multiple alignment with master sequence set to one of the proteins, ACI28628.
MUSCLE alignment
This link provides a look at protein multiple alignment resulting from a run of MUSCLE program.
Alignment from Blast RID
Alignment from Blast RID
Alignment from ID data
Trace assembly
Another alignment with master
And another one
And another one

To see your own alignment, your data

You can also embed Multiple Sequence Alignment Viewer on your own page.

This is an example of static embedding.

This is an example of dynamic embedding.

This is an example of interaction with SV on the same page.

This is an example of MSAV event handling.

This is an example of Different coloring options.

This is an example of Alignment Coordinate transformation.