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   Mus musculus Genome: Statistics  --  Annotation Release 103  Chromosome 4

Summary of the GenBank source sequences, the scaffolds, and the features annotated on the sequence based on sequence information available on Apr 03, 2013. Also summarizes the objects on each non-sequence-based map in the MapViewer.

These statistics are based on the assembly and annotation process documented here.

Statistics for this build [Mus musculus Annotation Release 103] can be found here.


  N50 Scaffold Length (Kb) back to top
GRCm38.p1-C57BL/6J  All  86,267
Mapped  86,267
GRCm38.p1-129S6/SvEvTac  All  171
Mapped  171
GRCm38.p1-129S7/SvEvBrd-Hprt-b-m2  All  265
Mapped  265
GRCm38.p1-129X1/SvJ  All  76
Mapped  76
GRCm38.p1-NOD/MrkTac  All  3,051
Mapped  3,051
GRCm38.p1-PATCHES  All  368
Mapped  368
GRCm38.p1-UNKNOWN  All  240
Mapped  240
Mm_Celera-Primary Assembly  All  38,164
Mapped  38,164

  Genes, Exons and Introns   (Complete Genome) back to top
Assembly: GRCm38.p1-C57BL/6J
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding13,3226 bp11,488 bp295 bp
RefSeq Non-Coding1,0421 bp5,677 bp526 bp
Model16,2402 bp12,851 bp318 bp
IntronsRefSeq Coding12,01666 bp375,391 bp4,631 bp
RefSeq Non-Coding38837 bp293,130 bp9,948 bp
Model13,8724 bp525,637 bp4,571 bp
TranscriptsRefSeq1,93356 bp23,495 bp2,718.92 bp
Transcripts per GeneRefSeq-1101
mRNA-000
One-exon TranscriptsRefSeq193---
Exons per TranscriptRefSeq-11069
Assembly: GRCm38.p1-129S6/SvEvTac
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding1664 bp1,170 bp477 bp
RefSeq Non-Coding-- bp- bp- bp
Model1764 bp1,444 bp536 bp
IntronsRefSeq Coding12469 bp6,347 bp1,483 bp
RefSeq Non-Coding-- bp- bp- bp
Model12469 bp6,347 bp1,483 bp
TranscriptsRefSeq41,745 bp2,162 bp1,915.5 bp
Transcripts per GeneRefSeq-111
mRNA-000
Exons per TranscriptRefSeq-354
Assembly: GRCm38.p1-129S7/SvEvBrd-Hprt-b-m2
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding8726 bp5,847 bp247 bp
RefSeq Non-Coding3612 bp578 bp125 bp
Model1357 bp3,133 bp169 bp
IntronsRefSeq Coding72122 bp11,835 bp987 bp
RefSeq Non-Coding0- bp- bp- bp
Model11265 bp39,165 bp1,538 bp
TranscriptsRefSeq15540 bp7,507 bp1,552.87 bp
Transcripts per GeneRefSeq-121
mRNA-000
Exons per TranscriptRefSeq-476
Assembly: GRCm38.p1-129X1/SvJ
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding4960 bp1,765 bp1,249 bp
RefSeq Non-Coding1963 bp963 bp963 bp
Model6176 bp1,765 bp1,022 bp
IntronsRefSeq Coding0- bp- bp- bp
RefSeq Non-Coding0- bp- bp- bp
Model12,536 bp2,536 bp2,536 bp
TranscriptsRefSeq5960 bp1,766 bp1,192 bp
Transcripts per GeneRefSeq-111
mRNA-000
One-exon TranscriptsRefSeq5---
Exons per TranscriptRefSeq-111
Assembly: GRCm38.p1-NOD/MrkTac
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding1,3494 bp6,412 bp294 bp
RefSeq Non-Coding5028 bp4,396 bp541 bp
Model1,5142 bp6,297 bp292 bp
IntronsRefSeq Coding1,21128 bp126,456 bp3,476 bp
RefSeq Non-Coding1395 bp21,130 bp3,700 bp
Model1,3092 bp126,456 bp3,159 bp
TranscriptsRefSeq19966 bp10,118 bp2,967.2 bp
Transcripts per GeneRefSeq-151
mRNA-000
One-exon TranscriptsRefSeq10---
Exons per TranscriptRefSeq-17010
Assembly: GRCm38.p1-PATCHES
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding3816 bp2,250 bp545 bp
RefSeq Non-Coding1229 bp1,730 bp477 bp
Model505 bp2,254 bp539 bp
IntronsRefSeq Coding29280 bp22,981 bp2,954 bp
RefSeq Non-Coding0- bp- bp- bp
Model37204 bp22,981 bp3,418 bp
TranscriptsRefSeq10756 bp3,882 bp2,149.9 bp
Transcripts per GeneRefSeq-111
mRNA-000
One-exon TranscriptsRefSeq1---
Exons per TranscriptRefSeq-163
Assembly: GRCm38.p1-UNKNOWN
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding8162 bp2,896 bp230 bp
RefSeq Non-Coding10107 bp1,076 bp351 bp
Model893 bp2,892 bp205 bp
IntronsRefSeq Coding7585 bp13,090 bp1,744 bp
RefSeq Non-Coding796 bp4,676 bp2,088 bp
Model8274 bp13,090 bp1,660 bp
TranscriptsRefSeq9593 bp4,758 bp2,651.44 bp
Transcripts per GeneRefSeq-111
mRNA-000
One-exon TranscriptsRefSeq1---
Exons per TranscriptRefSeq-11610
Assembly: Mm_Celera-Primary Assembly
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding12,6744 bp11,485 bp292 bp
RefSeq Non-Coding8255 bp9,177 bp523 bp
Model15,0943 bp12,852 bp304 bp
IntronsRefSeq Coding11,45830 bp374,811 bp4,661 bp
RefSeq Non-Coding28430 bp309,008 bp11,810 bp
Model12,8892 bp374,811 bp4,628 bp
TranscriptsRefSeq1,77756 bp23,495 bp2,812.07 bp
Transcripts per GeneRefSeq-1101
mRNA-000
One-exon TranscriptsRefSeq166---
Exons per TranscriptRefSeq-11069

  Statistics by Map back to top
Assembly: GRCm38.p1-C57BL/6J (reference)
MapObj countLength
MinMaxAvgStd Dev
Clone57,386 (16)65 (36,391)144,365,455 (219,356)453,718 (70,141)4,903,068 (59,524)
Comp1,195252262,321127,24373,913
Contig(6)25,841,807 (1,976)86,266,799 (227,966)51,051,677 (118,572)31,430,458 (102,336)
CpG12,032 (104)201 (201)4,144 (1,799)433 (485)360 (387)
Genes_seq1,987 (28)46 (998)1,259,720 (23,835)30,791 (5,487)78,411 (5,574)
Model RNA4,313 (43)190 (351)1,265,327 (21,928)41,651 (5,292)87,680 (5,727)
RefSeq RNA1,902 (31)56 (755)1,259,720 (23,835)42,632 (5,278)93,756 (5,447)
Repeats269,950 (1,446)
STS2,661 (4)36 (123)1,694 (1,082)268 (418)280 (446)
Variation4,424,919 (4,869)(1)965 (517)(1)(11)
ensGenes2,826 (32)56 (149)2,270,724 (20,303)25,290 (2,563)82,321 (3,868)
ensRNA7,390 (39)56 (149)2,072,514 (20,303)29,492 (2,998)79,280 (3,967)
gbDNA16,898 (66)53 (136)487,457 (25,923)31,797 (3,490)62,578 (4,467)
rnaHs9,490 (7)59 (606)1,410,446 (29,025)38,751 (4,673)70,297 (10,738)
rnaMm271,796 (1,283)28 (28)2,072,514 (90,857)6,131 (1,692)24,795 (5,120)
rnaRn53,890 (133)40 (156)999,252 (17,971)6,987 (976)19,718 (1,781)
rnaRodentia9,547 (29)117 (485)1,268,084 (9,625)30,309 (4,443)71,495 (3,034)
Total   5,148,185 (8,136)(1)144,365,455 (227,966)5,867 (655)n/a
Assembly: GRCm38.p1-129S6/SvEvTac (reference)
MapObj countLength
MinMaxAvgStd Dev
Clone363,999168,72585,18547,143
Comp1170,592170,592170,592
Contig1170,585170,585170,585
CpG7211762444252
Genes_seq71,4479,7854,3723,124
Model RNA61,4449,7905,4522,867
RefSeq RNA43,2399,7856,3612,678
Repeats360
STS161001,612305383
Variation3,944115412
gbDNA35311185,53312,86334,078
rnaMm18819,7854,7773,345
rnaRn524025,1005,37911,030
rnaRodentia82,5922,9222,838152
Total   4,4481185,533921n/a
Assembly: GRCm38.p1-129S7/SvEvBrd-Hprt-b (reference)
MapObj countLength
MinMaxAvgStd Dev
Clone550680231,45647,27039,794
Comp769,753191,695127,74743,008
Contig569,753284,739178,84599,770
CpG57201784397174
Genes_seq222,66665,5419,10413,909
Model RNA4031842,8977,5618,200
RefSeq RNA152,66625,5646,3626,758
Repeats1,246
STS413211,370210183
Variation23,554178715
gbDNA145165323,08246,51083,924
rnaHs93,19019,8308,3596,758
rnaMm3,20728104,7242,4054,864
rnaRn9184135,25519,13738,048
rnaRodentia38264112,23814,82828,809
Total   29,3991323,0821,543n/a
Assembly: GRCm38.p1-129X1/SvJ (reference)
MapObj countLength
MinMaxAvgStd Dev
Clone415,61137,10726,0788,885
Comp176,09976,09976,099
Contig176,09976,09976,099
CpG420337725085
Genes_seq67731,7651,122343
Model RNA59603,8841,7341,247
RefSeq RNA59601,7651,192333
Repeats172
STS81081,693683601
Variation2,31812612
gbDNA31413182,20625,93655,830
rnaHs39699699690
rnaMm194903,3121,160645
rnaRn10443960814174
rnaRodentia789996093724
Total   2,5941182,206436n/a
Assembly: GRCm38.p1-NOD/MrkTac (reference)
MapObj countLength
MinMaxAvgStd Dev
Clone4,3523812,832,860217,234244,292
Comp611,994219,162127,00753,140
Contig4215,6013,205,4252,024,3521,399,910
CpG1,3192012,279400323
Genes_seq15665340,93626,31842,861
Model RNA389289341,22228,95639,857
RefSeq RNA19965340,93630,99241,851
Repeats17,915
STS355381,690325360
Variation233,651192413
gbDNA1,64269298,12734,46269,966
rnaHs95875338,46424,45334,052
rnaMm25,30328372,1674,92112,629
rnaRn5,06570407,0276,57021,083
rnaRodentia818126729,67321,63540,264
Total   292,18713,205,4254,241n/a
Assembly: GRCm38.p1-PATCHES (reference)
MapObj countLength
MinMaxAvgStd Dev
Comp36,477192,250122,762101,343
Contig1368,286368,286368,286
CpG48201993351233
Genes_seq1375832,0868,9618,740
Model RNA1875832,14313,45910,462
RefSeq RNA1075832,08610,7189,299
Repeats923
STS32181,325376387
gbDNA82191192,25026,56046,045
rnaHs3479772646151
rnaMm7293032,9123,0246,728
rnaRn22279158,3258,70816,089
rnaRodentia1527231,46310,92413,310
Total   2,09918368,2863,674n/a
Assembly: GRCm38.p1-UNKNOWN (reference)
MapObj countLength
MinMaxAvgStd Dev
Clone63504185,25363,71046,596
Comp44,859191,27194,72785,349
Contig2138,473240,348189,41172,037
CpG55203779305111
Genes_seq92,12446,23618,62815,207
Model RNA1291946,24222,35812,342
RefSeq RNA92,12446,23618,62815,207
Repeats716
STS1601041,572328326
Variation12,57918412
gbDNA61564183,49519,39737,890
rnaHs312,12164,44421,40815,398
rnaMm9252946,2363,2246,499
rnaRn10110132,8044,2707,939
rnaRodentia211,59146,19419,39814,747
Total   14,7481240,348755n/a
Assembly: Mm_Celera-Primary Assembly
MapObj countLength
MinMaxAvgStd Dev
Clone50,005144145,158,831276,2223,280,696
Comp9,470183207,13014,93617,821
Contig381,04351,681,0673,858,73911,032,236
CpG10,7612013,784411324
Genes_seq1,807461,249,69432,16780,887
Model RNA3,8202171,255,29739,39386,255
RefSeq RNA1,777561,249,69443,76395,626
Repeats256,200
STS2,585361,700268278
Variation4,139,952196613
gbDNA7,42853487,45769,88991,991
rnaHs9,535641,404,58738,15869,493
rnaMm257,068242,137,1845,86622,660
rnaRn53,659401,009,6407,01319,137
rnaRodentia9,6271171,248,65230,11470,133
Total   4,813,7321145,158,8313,626n/a
Non-sequence maps
MapObj countLength
MinMaxAvgStd Dev
MGI3,2380000
WI8970000
WI_GEN3620000
WI_YAC4000000
Total   4,897000n/a



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