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   Mus musculus Genome: Statistics  --  Annotation Release 103  Chromosome 15

Summary of the GenBank source sequences, the scaffolds, and the features annotated on the sequence based on sequence information available on Apr 03, 2013. Also summarizes the objects on each non-sequence-based map in the MapViewer.

These statistics are based on the assembly and annotation process documented here.

Statistics for this build [Mus musculus Annotation Release 103] can be found here.


  N50 Scaffold Length (Kb) back to top
GRCm38.p1-C57BL/6J  All  65,061
Mapped  65,061
GRCm38.p1-129S6/SvEvTac  All  88
Mapped  88
GRCm38.p1-129S7/SvEvBrd-Hprt-b-m2  All  89
Mapped  89
Mm_Celera-Primary Assembly  All  28,968
Mapped  28,968

  Genes, Exons and Introns   (Complete Genome) back to top
Assembly: GRCm38.p1-C57BL/6J
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding8,5379 bp11,998 bp286 bp
RefSeq Non-Coding6954 bp8,431 bp523 bp
Model10,3862 bp11,998 bp308 bp
IntronsRefSeq Coding7,7903 bp275,464 bp4,849 bp
RefSeq Non-Coding34952 bp93,752 bp7,046 bp
Model8,9932 bp487,170 bp4,652 bp
TranscriptsRefSeq1,20748 bp22,806 bp3,067.24 bp
Transcripts per GeneRefSeq-1151
mRNA-000
One-exon TranscriptsRefSeq92---
Exons per TranscriptRefSeq-17910
Assembly: GRCm38.p1-129S6/SvEvTac
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding8117 bp1,858 bp424 bp
RefSeq Non-Coding-- bp- bp- bp
Model721 bp531 bp215 bp
IntronsRefSeq Coding5448 bp20,310 bp5,865 bp
RefSeq Non-Coding-- bp- bp- bp
Model537 bp43,841 bp9,629 bp
TranscriptsRefSeq32,110 bp3,010 bp2,679.67 bp
Transcripts per GeneRefSeq-111
mRNA-000
One-exon TranscriptsRefSeq1---
Exons per TranscriptRefSeq-142
Assembly: GRCm38.p1-129S7/SvEvBrd-Hprt-b-m2
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding1544 bp2,255 bp347 bp
RefSeq Non-Coding-- bp- bp- bp
Model1544 bp2,261 bp325 bp
IntronsRefSeq Coding14139 bp7,142 bp2,209 bp
RefSeq Non-Coding-- bp- bp- bp
Model13139 bp7,142 bp1,854 bp
TranscriptsRefSeq32,360 bp2,893 bp2,570.67 bp
Transcripts per GeneRefSeq-121
mRNA-000
Exons per TranscriptRefSeq-787
Assembly: Mm_Celera-Primary Assembly
StatisticEvidencecountminmaxavg
ExonsRefSeq Coding8,4473 bp10,062 bp283 bp
RefSeq Non-Coding6864 bp8,431 bp528 bp
Model10,2052 bp10,011 bp296 bp
IntronsRefSeq Coding7,69626 bp279,825 bp4,898 bp
RefSeq Non-Coding33025 bp98,512 bp7,180 bp
Model8,8102 bp427,200 bp4,484 bp
TranscriptsRefSeq1,18348 bp22,806 bp3,102.86 bp
Transcripts per GeneRefSeq-1151
mRNA-000
One-exon TranscriptsRefSeq89---
Exons per TranscriptRefSeq-17910

  Statistics by Map back to top
Assembly: GRCm38.p1-C57BL/6J (reference)
MapObj countLength
MinMaxAvgStd Dev
Clone37,05211992,486,259186,0201,981,981
Comp75283306,580133,84748,792
Contig35,966,36365,061,23533,569,01929,738,821
CpG7,5912013,684430359
Genes_seq1,194481,211,35233,97479,131
Model RNA2,7042731,211,43541,92085,166
RefSeq RNA1,207481,211,35244,12484,910
Repeats167,390
STS1,741511,699273298
Variation2,945,402175012
ensGenes1,104531,211,42735,64885,174
ensRNA2,681531,211,35233,54578,380
gbDNA11,61950679,52038,08573,015
rnaHs6,276541,211,43140,37788,237
rnaMm201,219281,211,3525,92520,870
rnaRn43,71044559,6797,78923,653
rnaRodentia5,985671,211,35130,00169,877
Total   3,437,630192,486,2592,864n/a
Assembly: GRCm38.p1-129S6/SvEvTac (reference)
MapObj countLength
MinMaxAvgStd Dev
Clone351439,59626,39522,415
Comp188,44288,44288,442
Contig188,44288,44288,442
CpG11201952355296
Genes_seq352225,57110,90913,060
Model RNA243349,22224,82834,499
RefSeq RNA352225,57110,90913,060
Repeats218
Variation2,39913411
gbDNA13183164,22497,32563,740
rnaHs135394,9502,3602,132
rnaMm5022125,5712,9606,070
rnaRn4321155,3024,00611,960
rnaRodentia545225,5698,2099,903
Total   2,7651164,224736n/a
Assembly: GRCm38.p1-129S7/SvEvBrd-Hprt-b (reference)
MapObj countLength
MinMaxAvgStd Dev
Clone951289,01639,57622,465
Comp189,17789,17789,177
Contig189,17789,17789,177
CpG26205906348183
Genes_seq212,32816,67314,5013,072
Model RNA212,19316,80614,5003,262
RefSeq RNA312,32816,67313,7762,509
Repeats225
STS421298172118
Variation2,45712311
gbDNA84269280,46440,28594,682
rnaHs42,13715,52211,7836,469
rnaMm1802852,5383,0006,039
rnaRn4022118,9084,2656,216
rnaRodentia958712,16510,1813,610
Total   3,0471280,4641,602n/a
Assembly: Mm_Celera-Primary Assembly
MapObj countLength
MinMaxAvgStd Dev
Clone35,31215094,844,630201,2032,054,090
Comp6,231221380,24215,64519,520
Contig131,36434,908,4337,726,20612,989,951
CpG7,1682013,754415332
Genes_seq1,176481,209,27934,26179,209
Model RNA2,5691711,209,36238,22175,520
RefSeq RNA1,183481,209,27944,69285,184
Repeats164,674
STS1,718511,699273297
Variation2,872,206168013
gbDNA5,20850679,52085,868100,182
rnaHs6,191541,209,35839,53684,967
rnaMm196,883281,209,2795,73820,023
rnaRn43,772451,059,3047,69123,602
rnaRodentia5,933671,209,27829,67968,899
Total   3,350,237194,844,6302,936n/a
Non-sequence maps
MapObj countLength
MinMaxAvgStd Dev
MGI1,6280000
WI5530000
WI_GEN2700000
WI_YAC3320000
Total   2,783000n/a



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