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Human genome overview page (Annotation Release 108)
Human genome overview page (Annotation Release 105)
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Region Shown:

Homo sapiens (human)  Annotation Release 108 (Current)BLAST human sequences
Chromosome: 1 2 3 4 5 6 7 8 [ 9 ] 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT
Query: VPS13A    [clear]
 Master Map: Phenotype (includes QTLs) Summary of Maps mapsnoptions.gif 
Region Displayed: 75,910K-78,680K bp   Download/View Sequence/Evidence

Summary of Maps:
Map 1: unknown map "snp"
Region Displayed: 0.54-0.57 unknown_units
Map 2: Genes On SequenceTable View
Region Displayed: 75,910K-78,680K bp   Download/View Sequence/Evidence
Total Genes On Chromosome: 2262 [9 not localized]
Genes Labeled: 33 Total Genes in Region: 33
Map 3: Phenotype (includes QTLs)Table View
Region Displayed: 75,910K-78,680K bp   Download/View Sequence/Evidence
Total Phenotypes On Chromosome: 140
Phenotypes Labeled: 3 Total Phenotypes in Region: 3
Gene GCNT1
OTTHUMP00000021502|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N--acetylglucosaminyltransferase|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase|beta-1,6-N-acetylglucosaminyltransferase|core 2 GnT|core 2 beta-1,6-N-acetylglucosaminyltransferase I|core 2 beta1,6 N-acetylglucosaminyltransferase-I|core 2 branching enzyme|core 2-branching enzyme|core2-GlcNAc-transferase|glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
core 2 GnT
core 2 beta1,6 N-acetylglucosaminyltransferase-I
core 2-branching enzyme
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N--acetylglucosaminyltransferase|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase|beta-1,6-N-acetylglucosaminyltransferase|core 2 GnT|core 2 beta-1,6-N-acetylglucosaminyltransferase I|core 2 beta1,6 N-acetylglucosaminyltransferase-I|core 2 branching enzyme|core 2-branching enzyme|core2-GlcNAc-transferase|glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)|glucosaminyl transferase 1, core 2
core 2 beta-1,6-N-acetylglucosaminyltransferase I
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase
beta-1,6-N-acetylglucosaminyltransferase
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase|beta-1,6-N-acetylglucosaminyltransferase|core 2 GnT|core 2 beta-1,6-N-acetylglucosaminyltransferase I|core 2 branching enzyme|glucosaminyl transferase 1, core 2
core2-GlcNAc-transferase
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N--acetylglucosaminyltransferase
glucosaminyl transferase 1, core 2
core 2 branching enzyme
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N--acetylglucosaminyltransferase|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase|beta-1,6-N-acetylglucosaminyltransferase|core 2 GnT|core 2 beta-1,6-N-acetylglucosaminyltransferase I|core 2 beta1,6 N-acetylglucosaminyltransferase-I|core 2 branching enzyme|core 2-branching enzyme|core2-GlcNAc-transferase|glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)
hCG_1984855
OTTHUMP00000021502
Aliases
C2GNT, MGC126335, C2GNT-L, NAGCT2, G6NT, MGC126336, C2GNT1, NACGT2, GCNT1
Gene GNAQ
OTTHUMP00000021516|guanine nucleotide-binding protein G(q) subunit alpha|guanine nucleotide-binding protein alpha-q
guanine nucleotide binding protein (G protein), q polypeptide
guanine nucleotide-binding protein G(q) subunit alpha
guanine nucleotide-binding protein alpha-q
guanine nucleotide-binding protein G(q) subunit alpha|guanine nucleotide-binding protein alpha-q
hCG_1984513
OTTHUMP00000021516
Aliases
GNAQ, G-ALPHA-q, GAQ, CMC1, SWS
Gene PCSK5
OTTHUMP00000021497|OTTHUMP00000021498|OTTHUMP00000021499|hPC6|prohormone convertase 5|proprotein convertase 5|proprotein convertase 6|proprotein convertase PC5|protease PC6|subtilisin/kexin-like protease PC5
OTTHUMP00000021497
OTTHUMP00000021499
OTTHUMP00000021498
hPC6|prohormone convertase 5|proprotein convertase 5|proprotein convertase 6|proprotein convertase PC5|protease PC6|subtilisin/kexin-like protease PC5
hPC6
subtilisin/kexin-like protease PC5
protease PC6
proprotein convertase 6
hCG_2036726
prohormone convertase 5|proprotein convertase PC5|protease PC6|subtilisin/kexin-like protease PC5
prohormone convertase 5
proprotein convertase 5
proprotein convertase PC5
Aliases
FLJ11149, FLJ16215, PC5, subtilase, PC6A, PC6, SPC6, PCSK5
Gene GNA14
OTTHUMP00000021515
hCG_27324
guanine nucleotide-binding protein 14
G alpha 14
G-protein subunit alpha-14
guanine nucleotide-binding protein subunit alpha-14
g alpha-14
Aliases
GNA14
Gene VPS13A
OTTHUMP00000021513|OTTHUMP00000021514|OTTHUMP00000240008|OTTHUMP00000240059|chorea-acanthocytosis protein|vacuolar protein sorting 13A|vacuolar protein sorting-associated protein 13A
hCG_1984861
vacuolar protein sorting 13A
vacuolar protein sorting-associated protein 13A
chorea-acanthocytosis protein
chorea-acanthocytosis protein|vacuolar protein sorting 13A|vacuolar protein sorting-associated protein 13A
OTTHUMP00000021514
OTTHUMP00000021513
OTTHUMP00000240008
OTTHUMP00000240059
Aliases
KIAA0986, CHAC, FLJ42030, VPS13A, CHOREIN
Gene PSAT1
hCG_1984423
phosphoserine aminotransferase
phosphohydroxythreonine aminotransferase
endometrial progesterone-induced protein
endometrial progesterone-induced protein|phosphohydroxythreonine aminotransferase|phosphoserine aminotransferase
OTTHUMP00000021524|OTTHUMP00000021525|endometrial progesterone-induced protein|phosphohydroxythreonine aminotransferase|phosphoserine aminotransferase
OTTHUMP00000021524
OTTHUMP00000021525
Aliases
NLS2, PSATD, PSAT1, PSA, MGC1460, EPIP, PSAT
Gene PCA3
prostate-specific gene DD3
prostate cancer antigen 3 (non-protein coding)
prostate cancer associated transcript 3 (non-protein coding)
Aliases
PCAT3, PCA3, DD3, NCRNA00019
Gene RFK
OTTHUMP00000216103
0610038L10Rik|ATP:riboflavin 5'-phosphotransferase|OTTHUMP00000216103|flavokinase
hCG_28366
0610038L10Rik|ATP:riboflavin 5'-phosphotransferase|OTTHUMP00000021501|OTTHUMP00000216103|flavokinase
flavokinase
0610038L10Rik|ATP:riboflavin 5'-phosphotransferase|flavokinase
0610038L10Rik
ATP:riboflavin 5'-phosphotransferase
OTTHUMP00000021501
Aliases
RIFK, RFK, FLJ11149
Gene CEP78
centrosomal protein of 78 kDa
OTTHUMP00000021520|OTTHUMP00000021521|OTTHUMP00000021522|OTTHUMP00000021523|OTTHUMP00000240118|centrosomal protein of 78 kDa
centrosomal protein 78kDa
OTTHUMP00000021520|centrosomal protein of 78 kDa
OTTHUMP00000021522
OTTHUMP00000240118
OTTHUMP00000021521
OTTHUMP00000021523
OTTHUMP00000021520
Aliases
C9orf81, CEP78, FLJ52093, FLJ12643, MGC135040, IP63, CRDHL
Gene SYNGR2P2
Aliases
SYNGR2P2
Gene ASS1P3
argininosuccinate synthetase pseudogene 3
Aliases
ASS1P3, ASSP3
Gene PRUNE2
olfaxin
BCH motif-containing molecule at the carboxyl terminal region 1|BNIP2 motif containing molecule at the carboxyl terminal region 1|prune homolog 2
BNIP2 motif-containing molecule at the C-terminal region 1
BCH motif-containing molecule at the carboxyl terminal region 1
BCH motif-containing molecule at the carboxyl terminal region 1|BNIP2 motif containing molecule at the carboxyl terminal region 1|BNIP2 motif-containing molecule at the C-terminal region 1|protein prune homolog 2
protein prune homolog 2
BNIP2 motif containing molecule at the carboxyl terminal region 1
prune homolog 2
hCG_1743456
BCH motif-containing molecule at the carboxyl terminal region 1|BNIP2 motif containing molecule at the carboxyl terminal region 1|BNIP2 motif-containing molecule at the C-terminal region 1|OTTHUMP00000021503|protein prune homolog 2
OTTHUMP00000021503
truncated PRUNE2
Aliases
PRUNE2, DKFZp762K117, BMCC1, FLJ50060, BNIPXL, RP11-58J3.2, FLJ54876, A214N16.3, KIAA0367, bA214N16.3, FLJ59118, C9orf65
Gene PPIAP87
Aliases
PPIAP87
Gene FOXB2
forkhead box protein B2
OTTHUMP00000021510
OTTHUMP00000021510|forkhead box protein B2
Aliases
bA159H20.4, FOXB2
Gene ATP5J2P3
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 pseudogene 3
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2 pseudogene 3
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 3
Aliases
bA159H20.5, ATP5J2P3
Gene RPSAP9
laminin receptor 1 pseudogene 9
Aliases
RPSAP9, LAMR1P9, RPSA_20_986
Gene LYPLA2P3
Aliases
LYPLA2P3
Gene RBM22P5
Aliases
RBM22P5
Gene RPL21P84
Aliases
RPL21P84, RPL21_32_987
Gene VPS13A-AS1
Aliases
LOC100286938, VPS13A-AS1
Gene DNAJB5P1
Aliases
DNAJB5P1
Gene RFC5P1
Aliases
RFC5P1
Gene GNA14-AS1
Aliases
RP11-466A17.1, GNA14-AS1
Gene LOC105376093
Gene LOC105376095
Gene LOC105376096
Gene RN7SKP59
Aliases
RN7SKP59
Gene NUTF2P3
Aliases
NUTF2P3
Gene RNU6-1303P
Aliases
RNU6-1303P
Gene LOC107987031
Gene LOC107987081
Gene LOC107987082
Gene LOC107987083
Chromosome
9
Position
78,357,605 - 78,473,559 (116K)
Orientation
+
Chromosome
9
Position
77,040,390 - 77,040,807 (418bp)
Orientation
+
Chromosome
9
Position
78,180,180 - 78,180,693 (514bp)
Orientation
-
Chromosome
9
Position
78,236,062 - 78,278,431 (42,370bp)
Orientation
+
Chromosome
9
Position
78,297,075 - 78,330,093 (33,019bp)
Orientation
+
Chromosome
9
Position
78,165,465 - 78,165,778 (314bp)
Orientation
+
Chromosome
9
Position
77,635,203 - 77,635,309 (107bp)
Orientation
-
Chromosome
9
Position
77,447,649 - 77,526,762 (79,114bp)
Orientation
+
Chromosome
9
Position
76,515,001 - 76,565,733 (50,733bp)
Orientation
+
Chromosome
9
Position
77,034,623 - 77,055,130 (20,508bp)
Orientation
-
Chromosome
9
Position
77,580,159 - 77,580,826 (668bp)
Orientation
+
Chromosome
9
Position
78,093,715 - 78,097,418 (3,704bp)
Orientation
-
Chromosome
9
Position
75,890,601 - 76,362,339 (471.7K)
Orientation
+
Chromosome
9
Position
76,441,666 - 76,507,416 (65,751bp)
Orientation
+
Chromosome
9
Position
76,764,436 - 76,787,569 (23,134bp)
Orientation
+
Chromosome
9
Position
76,970,320 - 76,971,225 (906bp)
Orientation
+
Chromosome
9
Position
77,072,678 - 77,073,292 (615bp)
Orientation
+
Chromosome
9
Position
77,176,756 - 77,177,917 (1,162bp)
Orientation
-
Chromosome
9
Position
76,592,927 - 76,677,586 (84,660bp)
Orientation
+
Chromosome
9
Position
78,178,162 - 78,179,741 (1,580bp)
Orientation
+
Chromosome
9
Position
76,385,517 - 76,394,528 (9,012bp)
Orientation
-
Chromosome
9
Position
77,177,353 - 77,421,537 (244.2K)
Orientation
+
Chromosome
9
Position
77,906,976 - 77,917,451 (10,476bp)
Orientation
-
Chromosome
9
Position
77,716,274 - 78,031,449 (315.2K)
Orientation
-
Chromosome
9
Position
76,549,085 - 76,549,813 (729bp)
Orientation
-
Chromosome
9
Position
76,611,376 - 76,906,220 (294.8K)
Orientation
-
Chromosome
9
Position
76,931,440 - 76,932,054 (615bp)
Orientation
-
Chromosome
9
Position
76,285,868 - 76,288,148 (2,281bp)
Orientation
-
Chromosome
9
Position
78,149,742 - 78,151,210 (1,469bp)
Orientation
-
Chromosome
9
Position
77,423,079 - 77,648,316 (225.2K)
Orientation
-
Chromosome
9
Position
76,398,599 - 76,400,038 (1,440bp)
Orientation
+
Chromosome
9
Position
77,019,655 - 77,020,953 (1,299bp)
Orientation
+
Chromosome
9
Position
78,219,009 - 78,219,572 (564bp)
Orientation
+
Symbol
LOC107987083
Evidence code
rnaseq
Cytogenetic coordinates
9q21.2
Description
uncharacterized LOC107987083
Symbol
ATP5J2P3
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2 pseudogene 3
Symbol
RPL21P84
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
ribosomal protein L21 pseudogene 84
Symbol
CEP78
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
centrosomal protein 78
Symbol
PSAT1
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
phosphoserine aminotransferase 1
Symbol
RN7SKP59
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
RNA, 7SK small nuclear pseudogene 59
Symbol
RNU6-1303P
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
RNA, U6 small nuclear 1303, pseudogene
Symbol
GNA14-AS1
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
GNA14 antisense RNA 1
Symbol
LOC105376093
Evidence code
rnaseq
Cytogenetic coordinates
9q21.13
Description
uncharacterized LOC105376093
Symbol
LOC105376096
Evidence code
rnaseq
Cytogenetic coordinates
9q21.2
Description
uncharacterized LOC105376096
Symbol
NUTF2P3
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
nuclear transport factor 2 pseudogene 3
Symbol
LOC107987031
Evidence code
rnaseq
Cytogenetic coordinates
9q21.2
Description
uncharacterized LOC107987031
Symbol
PCSK5
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.13
Description
proprotein convertase subtilisin/kexin type 5
Symbol
GCNT1
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.13
Description
glucosaminyl (N-acetyl) transferase 1, core 2
Symbol
PCA3
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
prostate cancer associated 3 (non-protein coding)
Symbol
LYPLA2P3
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
lysophospholipase II pseudogene 3
Symbol
RFC5P1
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
replication factor C 5 pseudogene 1
Symbol
VPS13A-AS1
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
VPS13A antisense RNA 1
Symbol
LOC105376095
Evidence code
mRNA
Cytogenetic coordinates
9q21.13-q21.2
Description
uncharacterized LOC105376095
Symbol
ASS1P3
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
argininosuccinate synthetase 1 pseudogene 3
Symbol
RFK
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.13
Description
riboflavin kinase
Symbol
VPS13A
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
vacuolar protein sorting 13 homolog A
Symbol
LOC107987081
Evidence code
mRNA
Cytogenetic coordinates
9q21.2
Description
uncharacterized LOC107987081
Symbol
GNAQ
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
G protein subunit alpha q
Symbol
PPIAP87
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.13
Description
peptidylprolyl isomerase A pseudogene 87
Symbol
PRUNE2
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
olfaxin
Symbol
DNAJB5P1
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
DnaJ heat shock protein family (Hsp40) member B5 pseudogene 1
Symbol
RBM22P5
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.13
Description
RNA binding motif protein 22 pseudogene 5
Symbol
SYNGR2P2
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
synaptogyrin 2 pseudogene 2
Symbol
GNA14
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
G protein subunit alpha 14
Symbol
RPSAP9
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.13
Description
ribosomal protein SA pseudogene 9
Symbol
FOXB2
Evidence code
best RefSeq
Cytogenetic coordinates
9q21.2
Description
forkhead box B2
Symbol
LOC107987082
Evidence code
protein
Cytogenetic coordinates
9q21.2
Description
cyclin-dependent kinases regulatory subunit 2 pseudogene

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