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Current tiling path for human chromosome 20

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TPF revision information

Last updated:
August 13, 2015 at 4:30 AM Eastern Time
By:
SC(gjt)
Version:
82

Patches and alternate loci

  • Purple cell with +P icon: patch component
  • Orange cell with +A icon: alt loci component

Join legend

  • Serious alignment problem, requires review
  • Minor alignment problem
  • Excellent alignment, meets all defined criteria
  • Certificate submitted, not yet approved
  • Certificate submitted and approved
  • Valid, contained clone
  • Join not evaluated due to one accession not being finished
Current tiling path for human chromosome 20 (v. 82):
Accession Name Contig Center Status Join Align length Gaps Percent identical Comments
GAP TELOMERE 10000
GAP type-3
   AEKP01151426.1 ? HSCHR20_CTG1 MINUS wgs
   GAP TYPE-2 625 PAIRED ENDS
   AEKP01151425.1 ? HSCHR20_CTG1 MINUS wgs
   GAP TYPE-2 100 PAIRED ENDS
   ABBA01053738.1 ? HSCHR20_CTG1 MINUS wgs
   FO704554.1 ABC14-50077400H20 HSCHR20_CTG1 CONTAINED_TURNOUT in ABBA01053738.1 fin 11,956 0 100 contained sequence
AL645732.1 LA20-2005C25 HSCHR20_CTG1 SC fin 2,000 0 99.900
AL360078.16 RP11-530N10 HSCHR20_CTG1 SC fin 100 0 100
AL034548.25 RP5-1103G7 HSCHR20_CTG1 SC fin 100 0 100
   KF495703.1 ? HSCHR20_CTG1 CONTAINED in AL034548.25 unk 61 1 100 alignment length < 2000
   KF456775.1 ? HSCHR20_CTG1 CONTAINED in AL034548.25 unk 326 0 99.693 alignment length < 2000
AL121747.41 RP5-852M4 HSCHR20_CTG1 SC fin 100 1 100 simple sequence in gap
AL049761.11 RP5-863C7 HSCHR20_CTG1 SC fin 90 0 98.889 identity < 99.6%
AL133231.15 RP5-867F11 HSCHR20_CTG1 SC fin 100 0 100
AL121758.24 RP5-850E9 HSCHR20_CTG1 SC fin 101 0 100
AL118502.38 RP11-371L19 HSCHR20_CTG1 SC fin 100 0 100
   KF511325.1 ? HSCHR20_CTG1 CONTAINED in AL118502.38 fin 335 1 100 alignment length < 2000
AL161939.10 RP11-276A18 HSCHR20_CTG1 SC fin 100 0 100
AL050325.20 RP5-824F16 HSCHR20_CTG1 SC fin 104 0 100
   KF456786.1 ? HSCHR20_CTG1 CONTAINED in AL050325.20 unk 297 0 99.663 alignment length < 2000
   KF456787.1 ? HSCHR20_CTG1 CONTAINED in AL050325.20 unk 272 0 99.632 alignment length < 2000
AL110114.1 RP5-868P24 HSCHR20_CTG1 SC fin 103 0 100
AL031665.19 RP4-545L17 HSCHR20_CTG1 SC fin 100 0 100
   KF510461.1 ? HSCHR20_CTG1 CONTAINED in AL031665.19 fin 395 1 100 alignment length < 2000
   KF456782.1 ? HSCHR20_CTG1 CONTAINED in AL031665.19 unk 602 0 99.834 alignment length < 2000
AL136531.16 RP11-314N13 HSCHR20_CTG1 SC fin 100 0 100
   KF456783.1 ? HSCHR20_CTG1 CONTAINED in AL136531.16 unk 383 0 99.739 alignment length < 2000
AL109658.5 RP4-776F14 HSCHR20_CTG1 SC fin 104 0 100
   KF456785.1 ? HSCHR20_CTG1 CONTAINED in AL109658.5 unk 303 0 99.670 alignment length < 2000
   KF456784.1 ? HSCHR20_CTG1 CONTAINED in AL109658.5 unk 288 0 99.653 alignment length < 2000
   KF510467.1 ? HSCHR20_CTG1 CONTAINED in AL109658.5 fin 389 1 100 alignment length < 2000
   KF510462.1 ? HSCHR20_CTG1 CONTAINED in AL109658.5 fin 367 1 100 alignment length < 2000
AL049634.8 RP4-576H24 HSCHR20_CTG1 SC fin 8,266 1 100
AL592544.2 RP4-531N19 HSCHR20_CTG1 SC fin 2,000 0 100
AL138804.17 RP11-77C3 HSCHR20_CTG1 SC fin 100 0 100 alignment length < 2000
AL109809.18 RP4-673D20 HSCHR20_CTG1 SC fin 100 0 100
   KF456789.1 ? HSCHR20_CTG1 CONTAINED in AL109809.18 unk 278 0 99.640 alignment length < 2000
AL121760.11 RP5-968J1 HSCHR20_CTG1 SC fin 97 0 100
AL117335.26 RP5-858L17 HSCHR20_CTG1 SC fin 96 0 100
AL034562.3 RP4-684O24 HSCHR20_CTG1 SC fin 100 0 100
AL359916.8 RP11-550O8 HSCHR20_CTG1 SC fin 100 0 100
AL121899.37 RP11-128M1 HSCHR20_CTG1 SC fin 100 0 100
   KF456791.1 ? HSCHR20_CTG1 CONTAINED in AL121899.37 unk 195 0 99.487 identity < 99.6%; alignment length < 2000
AL031678.2 RP4-816K17 HSCHR20_CTG1 SC fin 104 0 100
AL049650.8 RP4-734P14 HSCHR20_CTG1 SC fin 104 0 100
AL133339.13 RP4-807J1 HSCHR20_CTG1 SC fin 101 0 100
AL049712.12 RP4-686C3 HSCHR20_CTG1 SC fin 104 0 100
AL133345.11 RP5-1056J6 HSCHR20_CTG1 SC fin 101 0 100
AL035460.15 RP5-860F19 HSCHR20_CTG1 SC fin 100 0 100
AL161656.20 RP11-12M19 HSCHR20_CTG1 SC fin 100 0 100
AL121905.23 RP4-534B8 HSCHR20_CTG1 SC fin 100 0 100
AL160414.18 RP5-931H19 HSCHR20_CTG1 SC fin 100 0 100
AL121891.22 RP5-1187M17 HSCHR20_CTG1 SC fin 100 0 100
   KF495796.1 ? HSCHR20_CTG1 CONTAINED in AL121891.22 unk 341 0 99.413 identity < 99.6%; alignment length < 2000
AL109976.23 RP4-794I6 HSCHR20_CTG1 SC fin 98 0 100
   KF510464.1 ? HSCHR20_CTG1 CONTAINED in AL109976.23 fin 370 1 100 alignment length < 2000
AL117334.29 RP4-687F11 HSCHR20_CTG1 SC fin 100 0 100
AL353193.7 RP11-137F15 HSCHR20_CTG1 SC fin 100 0 100
AL109805.14 RP4-581P3 HSCHR20_CTG1 SC fin 100 0 100
AL132773.14 RP4-741H3 HSCHR20_CTG1 SC fin 100 0 100
AL356755.12 RP5-964F7 HSCHR20_CTG1 SC fin 100 0 100
AL109804.41 RP5-1009E24 HSCHR20_CTG1 SC fin 100 0 100
AL353194.13 RP11-119B16 HSCHR20_CTG1 SC fin 100 0 100
AL031670.6 RP4-681N20 HSCHR20_CTG1 SC fin 100 0 100
AL356414.11 RP11-352D3 HSCHR20_CTG1 SC fin 100 0 100
AL121675.36 RP4-779E11 HSCHR20_CTG1 SC fin 100 0 100
AL357040.14 RP11-137P16 HSCHR20_CTG1 SC fin 100 0 100
AL139350.17 RP11-307O10 HSCHR20_CTG1 SC fin 86,494 15 99.917 simple sequence in gap
AL121781.38 RP5-1164C1 HSCHR20_CTG1 SC fin 101 0 100
   KF456790.1 ? HSCHR20_CTG1 CONTAINED in AL121781.38 unk 275 0 99.636 alignment length < 2000
   KF456788.1 ? HSCHR20_CTG1 CONTAINED in AL121781.38 unk 272 0 99.632 alignment length < 2000
   KF510468.1 ? HSCHR20_CTG1 CONTAINED in AL121781.38 fin 372 1 100 alignment length < 2000
   KF511305.1 ? HSCHR20_CTG1 CONTAINED in AL121781.38 fin 322 1 100 alignment length < 2000
   KF511312.1 ? HSCHR20_CTG1 CONTAINED in AL121781.38 fin 361 1 100 alignment length < 2000
   KF456792.1 ? HSCHR20_CTG1 CONTAINED in AL121781.38 unk 281 0 99.644 alignment length < 2000
   KF454931.1 ? HSCHR20_CTG1 CONTAINED in AL121781.38 unk 161 0 98.758 identity < 99.6%; alignment length < 2000
   KF456794.1 ? HSCHR20_CTG1 CONTAINED in AL121781.38 unk 271 0 99.631 alignment length < 2000
AL121916.14 RP1-189G13 HSCHR20_CTG1 SC fin 100 0 100
AL133396.2 RP5-1068H6 HSCHR20_CTG1 SC fin 104 0 100
AL133354.14 RP4-599I11 HSCHR20_CTG1 SC fin 100 0 100
AL445075.1 RP4-571I10 HSCHR20_CTG1 SC fin 100 0 100
AL389886.10 RP1-237C24 HSCHR20_CTG1 SC fin 100 0 100
AL109841.16 RP5-826I18 HSCHR20_CTG1 SC fin 100 0 99.000 identity < 99.6%
AL121890.34 RP5-1116H23 HSCHR20_CTG1 SC fin 100 0 100
AL121924.13 RP4-746J20 HSCHR20_CTG1 SC fin 100 0 100
AL121755.23 RP4-680N4 HSCHR20_CTG1 SC fin 96 0 100
AL121757.7 RP5-828H9 HSCHR20_CTG1 SC fin 99 0 100
   KF456793.1 ? HSCHR20_CTG1 CONTAINED in AL121757.7 unk 199 0 99.497 identity < 99.6%; alignment length < 2000
   KF456795.1 ? HSCHR20_CTG1 CONTAINED in AL121757.7 unk 242 0 99.587 identity < 99.6%; alignment length < 2000
   KF456798.1 ? HSCHR20_CTG1 CONTAINED in AL121757.7 unk 468 0 99.786 alignment length < 2000
AL109935.39 RP5-1022P6 HSCHR20_CTG1 SC fin 100 0 100
AL117377.18 RP5-1037B9 HSCHR20_CTG1 SC fin 100 0 100
AL035249.6 RP5-1054C24 HSCHR20_CTG1 SC fin 100 0 100
AL390028.11 RP4-784N16 HSCHR20_CTG1 SC fin 100 0 100
AL035461.11 RP5-967N21 HSCHR20_CTG1 SC fin 100 0 100
   KF456797.1 ? HSCHR20_CTG1 CONTAINED in AL035461.11 unk 735 0 99.864 alignment length < 2000
   KF454943.1 ? HSCHR20_CTG1 CONTAINED in AL035461.11 unk 304 0 99.342 identity < 99.6%; alignment length < 2000
   KF456799.1 ? HSCHR20_CTG1 CONTAINED in AL035461.11 unk 315 0 99.683 alignment length < 2000
   KF456796.1 ? HSCHR20_CTG1 CONTAINED in AL035461.11 unk 297 0 99.663 alignment length < 2000
AL118505.17 RP5-1056H1 HSCHR20_CTG1 SC fin 100 0 100
   KF510478.1 ? HSCHR20_CTG1 CONTAINED in AL118505.17 fin 383 1 100 alignment length < 2000
AL359954.6 RP11-318P23 HSCHR20_CTG1 SC fin 99 0 100 half-dovetail of >0bp and <=50bp
AL109618.1 RP4-775C13 HSCHR20_CTG1 SC fin 100 0 100
AL158093.8 RP5-959I16 HSCHR20_CTG1 SC fin 100 0 100
AL162504.12 RP11-199O14 HSCHR20_CTG1 SC fin 100 0 100
AL121911.15 RP5-989D7 HSCHR20_CTG1 SC fin 100 0 100
AL035668.15 RP5-859D4 HSCHR20_CTG1 SC fin 107 0 100
   KF456801.1 ? HSCHR20_CTG1 CONTAINED in AL035668.15 unk 337 0 99.703 alignment length < 2000
AL109856.3 RP3-485E14 HSCHR20_CTG1 SC fin 105 0 100
AL034554.8 RP5-994L9 HSCHR20_CTG1 SC fin 100 0 100
   KF456802.1 ? HSCHR20_CTG1 CONTAINED in AL034554.8 unk 355 0 99.718 alignment length < 2000
AL161655.8 RP11-116E13 HSCHR20_CTG1 SC fin 100 0 99.000 identity < 99.6%
AL096799.6 RP4-764O22 HSCHR20_CTG1 SC fin 100 0 100
AL080248.7 RP11-19D2 HSCHR20_CTG1 SC fin 104 0 100
   KF456803.1 ? HSCHR20_CTG1 CONTAINED in AL080248.7 unk 385 0 99.740 alignment length < 2000
AL078643.5 RP5-988G17 HSCHR20_CTG1 SC fin 104 0 100
   KF456800.1 ? HSCHR20_CTG1 CONTAINED in AL078643.5 unk 276 0 99.638 alignment length < 2000
AL096792.5 RP5-1067P23 HSCHR20_CTG1 SC fin 104 0 100
   KF456809.1 ? HSCHR20_CTG1 CONTAINED in AL096792.5 unk 299 0 99.666 alignment length < 2000
AL096769.7 RP5-1080B10 HSCHR20_CTG1 SC fin 104 0 100
   KF456805.1 ? HSCHR20_CTG1 CONTAINED in AL096769.7 unk 274 0 99.635 alignment length < 2000
   KF456804.1 ? HSCHR20_CTG1 CONTAINED in AL096769.7 unk 299 0 99.666 alignment length < 2000
AL031653.5 RP5-1121J18 HSCHR20_CTG1 SC fin 104 0 100
AL031679.1 RP5-836E8 HSCHR20_CTG1 SC fin 100 0 100
   KF456811.1 ? HSCHR20_CTG1 CONTAINED in AL031679.1 unk 293 0 99.659 alignment length < 2000
AL021879.3 RP1-209B9 HSCHR20_CTG1 SC fin 96 0 100 half-dovetail of >0bp and <=50bp
   KF456808.1 ? HSCHR20_CTG1 CONTAINED in AL021879.3 unk 234 0 99.573 identity < 99.6%; alignment length < 2000
AL035664.18 RP4-611O11 HSCHR20_CTG1 SC fin 100 0 99.000 identity < 99.6%
AL021396.8 RP5-971N18 HSCHR20_CTG1 SC fin 104 0 100
AL050323.6 RP4-793N16 HSCHR20_CTG1 SC fin 104 0 100
AL021406.1 RP5-997K18 HSCHR20_CTG1 SC fin 100 0 100
   KF456810.1 ? HSCHR20_CTG1 CONTAINED in AL021406.1 unk 292 0 99.658 alignment length < 2000
   KF456806.1 ? HSCHR20_CTG1 CONTAINED in AL021406.1 unk 296 0 99.662 alignment length < 2000
   KF511324.1 ? HSCHR20_CTG1 CONTAINED in AL021406.1 fin 346 1 100 alignment length < 2000
   KF510482.1 ? HSCHR20_CTG1 CONTAINED in AL021406.1 fin 359 1 100 alignment length < 2000
AL121589.17 RP5-1140M3 HSCHR20_CTG1 SC fin 100 0 100
   KF456807.1 ? HSCHR20_CTG1 CONTAINED in AL121589.17 unk 285 0 99.649 alignment length < 2000
AL034551.17 RP4-606P22 HSCHR20_CTG1 SC fin 100 0 100
AL365212.15 RP4-581M22 HSCHR20_CTG1 SC fin 100 0 100
AL050319.9 RP5-1007P8 HSCHR20_CTG1 SC fin 104 0 100
AL031655.8 RP1-134N8 HSCHR20_CTG1 SC fin 100 0 100
   KF456814.1 ? HSCHR20_CTG1 CONTAINED in AL031655.8 unk 266 0 99.624 alignment length < 2000
AL049632.10 RP5-913G4 HSCHR20_CTG1 SC fin 100 0 100
AL050315.11 RP5-1173K17 HSCHR20_CTG1 SC fin 100 0 100
   KF456816.1 ? HSCHR20_CTG1 CONTAINED in AL050315.11 unk 279 0 99.642 alignment length < 2000
AL031683.2 RP5-881E24 HSCHR20_CTG1 SC fin 100 0 100
AL049593.10 RP4-654A7 HSCHR20_CTG1 SC fin 100 0 100
AL445567.1 RP5-859I17 HSCHR20_CTG1 SC fin 100 0 100
AL121898.23 RP11-430K20 HSCHR20_CTG1 SC fin 100 0 100
AL121909.10 RP4-812P3 HSCHR20_CTG1 SC fin 100 0 100
AL023805.2 RP4-811H13 HSCHR20_CTG1 SC fin 100 0 100
   KF456812.1 ? HSCHR20_CTG1 CONTAINED in AL023805.2 unk 122 0 99.180 identity < 99.6%; alignment length < 2000
AL031652.4 RP5-1119D9 HSCHR20_CTG1 SC fin 100 0 100
AL353612.9 RP5-986I17 HSCHR20_CTG1 SC fin 100 0 100
   KF456813.1 ? HSCHR20_CTG1 CONTAINED in AL353612.9 unk 294 0 99.660 alignment length < 2000
AL135935.17 RP11-193E12 HSCHR20_CTG1 SC fin 103 0 100
   KF510483.1 ? HSCHR20_CTG1 CONTAINED in AL135935.17 unk 392 1 100 alignment length < 2000
AL031682.4 RP5-873P14 HSCHR20_CTG1 SC fin 100 0 99.000 identity < 99.6%
   KF456817.1 ? HSCHR20_CTG1 CONTAINED in AL031682.4 unk 541 0 99.815 alignment length < 2000
   KF456818.1 ? HSCHR20_CTG1 CONTAINED in AL031682.4 unk 544 0 99.816 alignment length < 2000
AL034427.4 RP4-702M17 HSCHR20_CTG1 SC fin 100 0 100
AL353739.4 RP11-19D15 HSCHR20_CTG1 SC fin 100 0 100
AL109754.13 RP5-839B4 HSCHR20_CTG1 SC fin 100 0 100
   KF456815.1 ? HSCHR20_CTG1 CONTAINED in AL109754.13 unk 292 0 99.658 alignment length < 2000
AL354824.8 RP11-416N4 HSCHR20_CTG1 SC fin 100 0 100
AL023913.6 RP5-1068F16 HSCHR20_CTG1 SC fin 96 0 100
   KF456820.1 ? HSCHR20_CTG1 CONTAINED in AL023913.6 unk 602 0 99.834 alignment length < 2000
AL034430.4 RP5-931K24 HSCHR20_CTG1 SC fin 100 0 100
   KF456819.1 ? HSCHR20_CTG1 CONTAINED in AL034430.4 unk 278 0 99.640 alignment length < 2000
AL353599.7 RP11-254M13 HSCHR20_CTG1 SC fin 100 0 99.000 identity < 99.6%
AL133340.27 RP11-204H22 HSCHR20_CTG1 SC fin 92 0 100
AL035456.26 RP5-1099D15 HSCHR20_CTG1 SC fin 100 0 100
AL135937.22 RP1-278O22 HSCHR20_CTG1 SC fin 100 0 100
AL050403.16 RP4-697P8 HSCHR20_CTG1 SC fin 100 0 100
AL158042.9 RP11-103J8 HSCHR20_CTG1 SC fin 100 0 100
AL050322.13 RP4-727I10 HSCHR20_CTG1 SC fin 100 0 100
AL078588.9 RP4-784K2 HSCHR20_CTG1 SC fin 100 0 100
   KF456821.1 ? HSCHR20_CTG1 CONTAINED in AL078588.9 unk 387 0 99.742 alignment length < 2000
AL049649.7 RP4-734C18 HSCHR20_CTG1 SC fin 100 0 100
   KF456822.1 ? HSCHR20_CTG1 CONTAINED in AL049649.7 unk 281 0 99.644 alignment length < 2000
AL049690.20 RP5-1060K6 HSCHR20_CTG1 SC fin 100 0 100
   KF456825.1 ? HSCHR20_CTG1 CONTAINED in AL049690.20 unk 361 0 99.723 alignment length < 2000
AL079337.13 RP4-813H11 HSCHR20_CTG1 SC fin 101 0 100
AL109837.22 RP5-1128N12 HSCHR20_CTG1 SC fin 100 0 99.000 identity < 99.6%
AL161938.6 RP11-268G13 HSCHR20_CTG1 SC fin 100 0 100
AL445667.4 RP11-489A10 HSCHR20_CTG1 SC fin 93 0 100 half-dovetail of >0bp and <=50bp
AL080274.21 RP5-1012F16 HSCHR20_CTG1 SC fin 101 0 100
AL035448.29 RP4-742J24 HSCHR20_CTG1 SC fin 100 0 100
   KF456826.1 ? HSCHR20_CTG1 CONTAINED in AL035448.29 unk 301 0 99.668 alignment length < 2000
   KF456827.1 ? HSCHR20_CTG1 CONTAINED in AL035448.29 unk 124 0 99.194 identity < 99.6%; alignment length < 2000
AL034547.14 RP5-1098F8 HSCHR20_CTG1 SC fin 104 0 100
AL109838.11 RP4-796I8 HSCHR20_CTG1 SC fin 100 0 100
AL136460.28 RP11-102J14 HSCHR20_CTG1 SC fin 100 0 100
AL096862.18 RP4-744A17 HSCHR20_CTG1 SC fin 98 0 100
   KF456823.1 ? HSCHR20_CTG1 CONTAINED in AL096862.18 unk 285 0 99.649 alignment length < 2000
   KF511284.1 ? HSCHR20_CTG1 CONTAINED in AL096862.18 fin 373 1 100 alignment length < 2000
AL034561.5 RP4-692C8 HSCHR20_CTG1 SC fin 86 0 100
   KF456824.1 ? HSCHR20_CTG1 CONTAINED in AL034561.5 unk 287 0 99.652 alignment length < 2000
   KF456828.1 ? HSCHR20_CTG1 CONTAINED in AL034561.5 unk 306 0 99.673 alignment length < 2000
AL138850.12 RP11-104O6 HSCHR20_CTG1 SC fin 100 0 100
AL354804.15 RP4-708H13 HSCHR20_CTG1 SC fin 100 0 100
AL078623.28 RP5-1069C8 HSCHR20_CTG1 SC fin 100 0 100
   KF510463.1 ? HSCHR20_CTG1 CONTAINED in AL078623.28 fin 340 1 100 alignment length < 2000
   KF456831.1 ? HSCHR20_CTG1 CONTAINED in AL078623.28 unk 349 0 99.713 alignment length < 2000
   KF456830.1 ? HSCHR20_CTG1 CONTAINED in AL078623.28 unk 293 0 99.659 alignment length < 2000
AL133331.27 RP11-157E14 HSCHR20_CTG1 SC fin 100 0 100
AL445589.6 RP11-303K20 HSCHR20_CTG1 SC fin 100 0 100
AL109983.2 RP4-718P11 HSCHR20_CTG1 SC fin 100 0 100
   KF511287.1 ? HSCHR20_CTG1 CONTAINED in AL109983.2 fin 348 1 100 alignment length < 2000
   KF456829.1 ? HSCHR20_CTG1 CONTAINED in AL109983.2 unk 267 0 99.625 alignment length < 2000
   KF456832.1 ? HSCHR20_CTG1 CONTAINED in AL109983.2 unk 333 0 99.700 alignment length < 2000
AL050320.19 RP5-1077I2 HSCHR20_CTG1 SC fin 100 0 100
AL133463.16 RP11-149I18 HSCHR20_CTG1 SC fin 100 0 100
AL121782.9 RP4-585I14 HSCHR20_CTG1 SC fin 104 0 100
AL158089.8 RP3-487D22 HSCHR20_CTG1 SC fin 107 0 100
AL121754.18 RP4-629F1 HSCHR20_CTG1 SC fin 100 0 100
AL161659.17 RP11-526K24 HSCHR20_CTG1 SC fin 100 0 100
   KF456833.1 ? HSCHR20_CTG1 CONTAINED in AL161659.17 unk 394 0 99.746 alignment length < 2000
   KF511288.1 ? HSCHR20_CTG1 CONTAINED in AL161659.17 fin 374 1 100 alignment length < 2000
AL109657.8 RP5-842G6 HSCHR20_CTG1 SC fin 100 0 100
AL354683.12 RP11-259K11 HSCHR20_CTG1 SC fin 100 0 99.000 identity < 99.6%
AL117333.26 RP4-631M13 HSCHR20_CTG1 SC fin 100 0 100
AL353798.9 RP11-67K15 HSCHR20_CTG1 SC fin 92 0 100
AL136992.22 RP11-400P21 HSCHR20_CTG1 SC fin 100 0 100
AL132826.18 RP4-581I13 HSCHR20_CTG1 SC fin 100 0 100
AL355133.8 RP11-54N6 HSCHR20_CTG1 SC fin 100 0 100
AL121582.19 RP11-280O9 HSCHR20_CTG1 SC fin 100 0 99.000 identity < 99.6%
AL139825.14 RP11-467D7 HSCHR20_CTG1 SC fin 100 0 100
AL354773.8 RP5-855L24 HSCHR20_CTG1 SC fin 99 1 100
AL118510.6 RP5-858M22 HSCHR20_CTG1 SC fin 100 0 100
   KF456835.1 ? HSCHR20_CTG1 CONTAINED in AL118510.6 unk 305 0 99.672 alignment length < 2000
AL161800.10 RP11-318C17 HSCHR20_CTG1 SC fin 100 0 100
   KF456840.1 ? HSCHR20_CTG1 CONTAINED in AL161800.10 unk 305 0 99.672 alignment length < 2000
AL138808.17 RP5-974N19 HSCHR20_CTG1 SC fin 100 0 100
AL031677.5 RP4-790B6 HSCHR20_CTG1 SC fin 100 0 100
AL133462.23 RP11-108A16 HSCHR20_CTG1 SC fin 100 0 100
AL049633.3 RP5-1069O1 HSCHR20_CTG1 SC fin 101 0 100
AL049867.2 RP4-738I16 HSCHR20_CTG1 SC fin 95 0 100
   KF511289.1 ? HSCHR20_CTG1 CONTAINED in AL049867.2 fin 64 1 100 alignment length < 2000
   KF456834.1 ? HSCHR20_CTG1 CONTAINED in AL049867.2 unk 263 0 99.620 alignment length < 2000
AL158088.6 RP5-1003H17 HSCHR20_CTG1 SC fin 106 0 100
   KF456836.1 ? HSCHR20_CTG1 CONTAINED in AL158088.6 unk 339 0 99.705 alignment length < 2000
AL121584.24 RP11-388K2 HSCHR20_CTG1 SC fin 100 0 100
AL050324.5 RP5-822J19 HSCHR20_CTG1 SC fin 101 0 100
   KF456841.1 ? HSCHR20_CTG1 CONTAINED in AL050324.5 unk 205 0 99.512 identity < 99.6%; alignment length < 2000
   KF456838.1 ? HSCHR20_CTG1 CONTAINED in AL050324.5 unk 585 0 99.829 alignment length < 2000
AL118503.15 RP4-689C5 HSCHR20_CTG1 SC fin 101 0 100
AL035073.7 RP5-997O15 HSCHR20_CTG1 SC fin 2,588 0 100
AC006198.1 RP11-3A1 HSCHR20_CTG1 WIBR fin 120,599 14 99.966 simple sequence in gap
AL079338.16 RP5-841K13 HSCHR20_CTG1 SC fin 100 0 100
AL357654.9 RP5-1025P18 HSCHR20_CTG1 SC fin 100 0 100
AL136991.26 RP11-189J1 HSCHR20_CTG1 SC fin 100 0 100
AL357504.6 RP11-568B1 HSCHR20_CTG1 SC fin 100 0 100
AL161941.18 RP11-494B22 HSCHR20_CTG1 SC fin 100 0 100
AL117376.28 RP5-971B4 HSCHR20_CTG1 SC fin 100 0 100
   KF456843.1 ? HSCHR20_CTG1 CONTAINED in AL117376.28 unk 271 0 99.631 alignment length < 2000
   KF456837.1 ? HSCHR20_CTG1 CONTAINED in AL117376.28 unk 308 0 99.675 alignment length < 2000
AL118509.9 RP4-770C23 HSCHR20_CTG1 SC fin 100 0 100
AL049794.16 RP4-777L9 HSCHR20_CTG1 SC fin 100 0 100
AL355579.12 RP1-146C10 HSCHR20_CTG1 SC fin 100 0 100
AL135938.9 RP3-348M17 HSCHR20_CTG1 SC fin 108 0 100
AL034428.4 RP4-705D16 HSCHR20_CTG1 SC fin 100 0 100
AL121892.9 RP5-1195D24 HSCHR20_CTG1 SC fin 100 0 100
AL121592.14 RP4-765D23 HSCHR20_CTG1 SC fin 100 0 100
AL031684.14 RP5-917N8 HSCHR20_CTG1 SC fin 100 0 100
   KF456839.1 ? HSCHR20_CTG1 CONTAINED in AL031684.14 unk 308 0 99.675 alignment length < 2000
   KF456842.1 ? HSCHR20_CTG1 CONTAINED in AL031684.14 unk 296 0 99.662 alignment length < 2000
AL135940.11 RP5-896L12 HSCHR20_CTG1 SC fin 100 0 100
AL359511.16 RP1-298M8 HSCHR20_CTG1 SC fin 100 0 100
AL031675.4 RP4-751L1 HSCHR20_CTG1 SC fin 103 0 97.087 approved certificate; identity < 98%
AL121779.11 RP5-1094O14 HSCHR20_CTG1 SC fin 83 0 100
   KF456847.1 ? HSCHR20_CTG1 CONTAINED in AL121779.11 unk 263 0 99.620 alignment length < 2000
AL031664.1 RP4-531H16 HSCHR20_CTG1 SC fin 102 1 100
   KF456853.1 ? HSCHR20_CTG1 CONTAINED in AL031664.1 unk 313 0 99.681 alignment length < 2000
AL132765.38 RP11-462D18 HSCHR20_CTG1 SC fin 100 0 100
   KF456852.1 ? HSCHR20_CTG1 CONTAINED in AL132765.38 unk 103 0 99.029 identity < 99.6%; alignment length < 2000
AL160071.16 RP4-803K15 HSCHR20_CTG1 SC fin 100 0 100
+A AL035045.5 RP5-905G11 HSCHR20_CTG1 SC fin 100 0 100
   +A KF511286.1 ? HSCHR20_CTG1 CONTAINED in AL035045.5 fin 356 1 100 alignment length < 2000
   KF456846.1 ? HSCHR20_CTG1 CONTAINED in AL035045.5 unk 444 0 99.775 alignment length < 2000
AL121585.22 RP11-504H3 HSCHR20_CTG1 SC fin 101 0 100 half-dovetail of >0bp and <=50bp
   KF511290.1 ? HSCHR20_CTG1 CONTAINED in AL121585.22 fin 391 1 100 alignment length < 2000
   KF510465.1 ? HSCHR20_CTG1 CONTAINED in AL121585.22 fin 106 1 100 alignment length < 2000
AL160411.25 RP4-726N1 HSCHR20_CTG1 SC fin 100 0 100
AL050321.11 RP4-717M23 HSCHR20_CTG1 SC fin 100 0 100
   KF459584.1 ? HSCHR20_CTG1 CONTAINED in AL050321.11 unk 376 0 99.734 alignment length < 2000
AL389897.4 RP11-110C10 HSCHR20_CTG1 SC fin 100 0 100
AL049646.19 RP4-568F9 HSCHR20_CTG1 SC fin 97 0 100
AL158176.6 RP4-779L5 HSCHR20_CTG1 SC fin 104 0 100
AL121893.21 RP11-189K21 HSCHR20_CTG1 SC fin 95 0 100
AL121900.26 RP11-379J5 HSCHR20_CTG1 SC fin 100 0 100
AL121780.11 RP11-555E18 HSCHR20_CTG1 SC fin 100 0 100
AL035563.19 RP5-1068E13 HSCHR20_CTG1 SC fin 100 0 100
   KF456845.1 ? HSCHR20_CTG1 CONTAINED in AL035563.19 unk 306 0 99.673 alignment length < 2000
AL135936.11 RP11-3K6 HSCHR20_CTG1 SC fin 100 0 100
AL136090.12 RP11-97N19 HSCHR20_CTG1 SC fin 100 0 100
AL049647.7 RP5-1027G4 HSCHR20_CTG1 SC fin 104 0 100
AL139827.7 RP5-1040N20 HSCHR20_CTG1 SC fin 104 0 100
AL034425.9 RP4-542H21 HSCHR20_CTG1 SC fin 100 0 99.000 identity < 99.6%
AL139429.8 RP11-110K14 HSCHR20_CTG1 SC fin 100 0 99.000 identity < 99.6%
AL121830.25 RP4-718D20 HSCHR20_CTG1 SC fin 100 0 100
   KF456844.1 ? HSCHR20_CTG1 CONTAINED in AL121830.25 unk 282 0 99.645 alignment length < 2000
AL121761.5 RP1-122P22 HSCHR20_CTG1 SC fin 104 0 100
AL132821.17 RP5-999L4 HSCHR20_CTG1 SC fin 98 0 100
AL049538.9 RP5-1175I6 HSCHR20_CTG1 SC fin 104 0 100
   KF456855.1 ? HSCHR20_CTG1 CONTAINED in AL049538.9 unk 292 0 99.658 alignment length < 2000
AL035454.18 RP5-1002M8 HSCHR20_CTG1 SC fin 100 0 100
AL049648.9 RP5-1178H5 HSCHR20_CTG1 SC fin 98 1 100 simple sequence in gap
   KF456848.1 ? HSCHR20_CTG1 CONTAINED in AL049648.9 unk 259 0 99.614 alignment length < 2000
AL121721.20 RP5-1096J16 HSCHR20_CTG1 SC fin 100 0 100
AL158849.16 RP4-747D9 HSCHR20_CTG1 SC fin 100 0 100
AL161658.21 RP11-470C13 HSCHR20_CTG1 SC fin 100 0 100
AL121896.11 RP11-287B20 HSCHR20_CTG1 SC fin 100 0 100
AL078634.24 RP5-1049G11 HSCHR20_CTG1 SC fin 100 0 100
   KF511293.1 ? HSCHR20_CTG1 CONTAINED in AL078634.24 fin 382 1 100 alignment length < 2000
AL157718.10 RP11-23O13 HSCHR20_CTG1 SC fin 100 0 100
AL109953.24 RP4-746H2 HSCHR20_CTG1 SC fin 100 0 100
AL133465.30 RP5-1177M21 HSCHR20_CTG1 SC fin 100 0 100
   KF511291.1 ? HSCHR20_CTG1 CONTAINED in AL133465.30 fin 330 1 100 alignment length < 2000
   KF511294.1 ? HSCHR20_CTG1 CONTAINED in AL133465.30 fin 390 1 100 alignment length < 2000
   KF456849.1 ? HSCHR20_CTG1 CONTAINED in AL133465.30 unk 295 0 99.661 alignment length < 2000
   KF456851.1 ? HSCHR20_CTG1 CONTAINED in AL133465.30 unk 290 0 99.655 alignment length < 2000
AL121759.25 RP5-872K7 HSCHR20_CTG1 SC fin 100 0 100
   KF511292.1 ? HSCHR20_CTG1 CONTAINED in AL121759.25 fin 386 1 100 alignment length < 2000
AL110120.11 RP4-777D9 HSCHR20_CTG1 SC fin 97 0 100
   KF511297.1 ? HSCHR20_CTG1 CONTAINED in AL110120.11 fin 366 1 100 alignment length < 2000
   KF459716.1 ? HSCHR20_CTG1 CONTAINED in AL110120.11 unk 381 1 100 alignment length < 2000
AL117332.16 RP1-198K11 HSCHR20_CTG1 SC fin 100 0 100
AL158013.25 RP11-227D2 HSCHR20_CTG1 SC fin 100 0 100
AL133325.20 RP5-984P4 HSCHR20_CTG1 SC fin 100 0 100
AL121590.11 RP1-167O22 HSCHR20_CTG1 SC fin 100 0 100
   KF456854.1 ? HSCHR20_CTG1 CONTAINED in AL121590.11 unk 301 0 99.668 alignment length < 2000
   KF456850.1 ? HSCHR20_CTG1 CONTAINED in AL121590.11 unk 307 0 99.674 alignment length < 2000
AL035562.14 RP5-1065O2 HSCHR20_CTG1 SC fin 100 0 100
AL121921.7 RP4-560I16 HSCHR20_CTG1 SC fin 100 0 100
AL117375.12 RP1-80E14 HSCHR20_CTG1 SC fin 100 0 100
AL109807.16 RP5-1185K9 HSCHR20_CTG1 SC fin 100 0 100
AL157412.16 RP11-125P18 HSCHR20_CTG1 SC fin 100 0 100
   KF456859.1 ? HSCHR20_CTG1 CONTAINED in AL157412.16 unk 374 0 99.733 alignment length < 2000
   KF456858.1 ? HSCHR20_CTG1 CONTAINED in AL157412.16 unk 101 0 99.010 identity < 99.6%; alignment length < 2000
AL035258.10 RP5-1097P24 HSCHR20_CTG1 SC fin 100 0 100
AL049737.4 RP5-828K20 HSCHR20_CTG1 SC fin 100 0 100
AL356733.8 RP11-260O14 HSCHR20_CTG1 SC fin 100 0 100
AL121912.18 RP5-1004I9 HSCHR20_CTG1 SC fin 100 0 100
   KF456857.1 ? HSCHR20_CTG1 CONTAINED in AL121912.18 unk 310 0 99.677 alignment length < 2000
   KF456856.1 ? HSCHR20_CTG1 CONTAINED in AL121912.18 unk 267 0 99.625 alignment length < 2000
   KF456860.1 ? HSCHR20_CTG1 CONTAINED in AL121912.18 unk 287 0 99.652 alignment length < 2000
   KF456862.1 ? HSCHR20_CTG1 CONTAINED in AL121912.18 unk 617 0 99.838 alignment length < 2000
AL133464.12 RP11-500O11 HSCHR20_CTG1 SC fin 100 0 100
AL445603.12 XXyac-YR31BE7 HSCHR20_CTG1 SC fin 100 0 100
AL356742.12 RP11-216C10 HSCHR20_CTG1 SC fin 97 0 98.969 half-dovetail of >0bp and <=50bp; identity < 99.6%
AL121722.9 RP4-788L20 HSCHR20_CTG1 SC fin 101 0 100
AL158175.7 RP11-359G22 HSCHR20_CTG1 SC fin 101 0 100
AL049738.4 RP5-944N18 HSCHR20_CTG1 SC fin 92 1 100 half-dovetail of >0bp and <=50bp
AL353132.18 RP11-189G24 HSCHR20_CTG1 SC fin 100 0 100
   KF456861.1 ? HSCHR20_CTG1 CONTAINED in AL353132.18 unk 314 0 99.682 alignment length < 2000
   KF456865.1 ? HSCHR20_CTG1 CONTAINED in AL353132.18 unk 358 0 99.721 alignment length < 2000
   KF511296.1 ? HSCHR20_CTG1 CONTAINED in AL353132.18 fin 398 1 100 alignment length < 2000
AL049651.2 RP4-753D10 HSCHR20_CTG1 SC fin 100 0 100
AL118508.27 RP4-737E23 HSCHR20_CTG1 SC fin 100 0 99.000 identity < 99.6%
AL357508.10 RP11-457K6 HSCHR20_CTG1 SC fin 100 0 100
AL390037.16 RP5-851M4 HSCHR20_CTG1 SC fin 100 0 100
   KF456864.1 ? HSCHR20_CTG1 CONTAINED in AL390037.16 unk 64 0 98.438 identity < 99.6%; alignment length < 2000
AL096677.21 RP3-322G13 HSCHR20_CTG1 SC fin 103 0 100
AL109954.15 RP3-333B15 HSCHR20_CTG1 SC fin 100 0 100
   KF456863.1 ? HSCHR20_CTG1 CONTAINED in AL109954.15 unk 371 0 99.730 alignment length < 2000
AL121894.26 RP11-218C14 HSCHR20_CTG1 SC fin 100 0 100
AL359433.7 RP1-234M6 HSCHR20_CTG1 SC fin 100 0 100
AL591074.10 ICRF4X-60D10 HSCHR20_CTG1 SC fin 96 1 100 simple sequence in gap
   KF456866.1 ? HSCHR20_CTG1 CONTAINED in AL591074.10 unk 365 0 99.726 alignment length < 2000
   KF456867.1 ? HSCHR20_CTG1 CONTAINED in AL591074.10 unk 352 0 99.716 alignment length < 2000
   KF456870.1 ? HSCHR20_CTG1 CONTAINED in AL591074.10 unk 391 0 99.744 alignment length < 2000
AL359967.5 RP11-1P13 HSCHR20_CTG1 SC fin 100 0 100
AL121831.19 RP5-850N15 HSCHR20_CTG1 SC fin 100 0 100
AL133466.22 RP5-831C21 HSCHR20_CTG1 SC fin 100 0 100
AL110503.2 RP5-1100I6 HSCHR20_CTG1 SC fin 100 0 100
   KF511295.1 ? HSCHR20_CTG1 CONTAINED in AL110503.2 unk 387 1 100 alignment length < 2000
   KF456868.1 ? HSCHR20_CTG1 CONTAINED in AL110503.2 unk 446 0 99.776 alignment length < 2000
AL109830.11 RP5-977K12 HSCHR20_CTG1 SC fin 100 0 100
   KF456869.1 ? HSCHR20_CTG1 CONTAINED in AL109830.11 unk 295 0 99.661 alignment length < 2000
AL158090.3 RP4-564O4 HSCHR20_CTG1 SC fin 100 0 100
AL034426.5 RP4-580G13 HSCHR20_CTG1 SC fin 100 0 100
AL157413.18 RP11-526K17 HSCHR20_CTG1 SC fin 100 0 100
AL049594.4 RP5-860P4 HSCHR20_CTG1 SC fin 100 0 100
AL121925.10 RP5-966J20 HSCHR20_CTG1 SC fin 100 0 100
AL353582.16 CTD-2190D5 HSCHR20_CTG1 SC fin 100 0 100
   KF456875.1 ? HSCHR20_CTG1 CONTAINED in AL353582.16 unk 358 0 99.721 alignment length < 2000
   KF456876.1 ? HSCHR20_CTG1 CONTAINED in AL353582.16 unk 351 0 99.715 alignment length < 2000
AL035661.16 RP4-568C11 HSCHR20_CTG1 SC fin 104 0 100
   KF456874.1 ? HSCHR20_CTG1 CONTAINED in AL035661.16 unk 294 0 99.660 alignment length < 2000
AL080312.14 RP5-1025A1 HSCHR20_CTG1 SC fin 100 0 100
AL035252.5 RP4-738P15 HSCHR20_CTG1 SC fin 100 0 100
AL121772.19 RP5-965G21 HSCHR20_CTG1 SC fin 100 0 100
AL353812.13 RP11-384D7 HSCHR20_CTG1 SC fin 100 1 98.000 identity < 99.6%; alignment length < 2000
AL031672.13 RP4-691N24 HSCHR20_CTG1 SC fin 100 0 100
AL161802.15 RP11-96L6 HSCHR20_CTG1 SC fin 100 0 100
   KF456872.1 ? HSCHR20_CTG1 CONTAINED in AL161802.15 unk 368 0 99.728 alignment length < 2000
AL031673.19 RP4-694B14 HSCHR20_CTG1 SC fin 100 0 100
AL390198.17 RP13-401N8 HSCHR20_CTG1 SC fin 100 0 100 alignment length < 2000
AL078587.18 RP4-760C5 HSCHR20_CTG1 SC fin 100 0 100
   KF456871.1 ? HSCHR20_CTG1 CONTAINED in AL078587.18 unk 62 0 98.387 identity < 99.6%; alignment length < 2000
AL450124.7 CTD-2514C3 HSCHR20_CTG1 SC fin 100 0 100
AL391119.8 RP13-329D4 HSCHR20_CTG1 SC fin 100 0 100
AL121904.13 RP3-410C9 HSCHR20_CTG1 SC fin 100 0 100
AL358116.7 RP11-108H13 HSCHR20_CTG1 SC fin 24,030 3 99.921
AUXG01000470.1 ? HSCHR20_CTG1 None wgs
   GAP TYPE-2 25 PAIRED ENDS
   AUXG01000469.1 ? HSCHR20_CTG1 MINUS wgs
   GAP TYPE-2 1174 PAIRED ENDS
   AUXG01000468.1 ? HSCHR20_CTG1 MINUS wgs
   GAP TYPE-2 452 PAIRED ENDS
   AUXG01000467.1 ? HSCHR20_CTG1 MINUS wgs
GAP type-3
GAP CENTROMERE_DATA_START
GJ212091.1 ? CEN20_1 None wgs
   GAP TYPE-3 100 ALIGN GENUS
ABBA01018416.1 ? CEN20_2 None wgs
   GAP TYPE-2 5488 PAIRED ENDS
ABBA01018417.1 ? CEN20_2 None wgs
   GAP TYPE-3 100 ALIGN GENUS
GJ212093.1 ? CEN20_3 None wgs
   GAP TYPE-3 100 ALIGN GENUS
ABBA01005348.1 ? CEN20_4 None wgs
   GAP TYPE-2 5406 PAIRED ENDS
ABBA01005349.1 ? CEN20_4 None wgs
   GAP TYPE-3 100 ALIGN GENUS
GJ212095.1 ? CEN20_5 None wgs
   GAP TYPE-3 100 ALIGN GENUS
ABBA01014710.1 ? CEN20_6 None wgs
   GAP TYPE-3 100 ALIGN GENUS
ABBA01234589.1 ? CEN20_7 None wgs
   GAP TYPE-3 100 ALIGN GENUS
GJ212105.1 ? CEN20_8 None wgs
   GAP TYPE-3 100 ALIGN GENUS
ABBA01015867.1 ? CEN20_9 None wgs
   GAP TYPE-2 1471 PAIRED ENDS
   ABBA01015868.1 ? CEN20_9 MINUS wgs
   GAP TYPE-2 20 PAIRED ENDS
   ABBA01015869.1 ? CEN20_9 MINUS wgs
   GAP TYPE-2 20 PAIRED ENDS
ABBA01015870.1 ? CEN20_9 None wgs
   GAP TYPE-2 148 PAIRED ENDS
ABBA01015871.1 ? CEN20_9 None wgs
   GAP TYPE-2 60 PAIRED ENDS
ABBA01015872.1 ? CEN20_9 None wgs
   GAP TYPE-2 16596 PAIRED ENDS
ABBA01015873.1 ? CEN20_9 None wgs
   GAP TYPE-2 20 PAIRED ENDS
ABBA01015874.1 ? CEN20_9 None wgs
   GAP TYPE-2 928 PAIRED ENDS
   ABBA01015875.1 ? CEN20_9 MINUS wgs
   GAP TYPE-2 20 PAIRED ENDS
ABBA01015876.1 ? CEN20_9 None wgs
   GAP TYPE-2 20 PAIRED ENDS
   ABBA01015877.1 ? CEN20_9 MINUS wgs
   GAP TYPE-2 6027 PAIRED ENDS
ABBA01015878.1 ? CEN20_9 None wgs 2,729 0 99.890
AL837517.14 RP11-20K6 CEN20_9 SC fin 34,192 3 99.895
ABBA01015879.1 ? CEN20_9 None wgs
   GAP TYPE-3 100 ALIGN GENUS
GJ212107.1 ? CEN20_10 None wgs
   GAP TYPE-3 100 ALIGN GENUS
ABBA01031657.1 ? CEN20_11 None wgs
   GAP TYPE-2 280 PAIRED ENDS
ABBA01031658.1 ? CEN20_11 None wgs
   GAP TYPE-2 20 PAIRED ENDS
ABBA01031659.1 ? CEN20_11 None wgs
   GAP TYPE-2 479 PAIRED ENDS
ABBA01031660.1 ? CEN20_11 None wgs
   GAP TYPE-2 29 PAIRED ENDS
ABBA01031661.1 ? CEN20_11 None wgs
   GAP TYPE-2 1070 PAIRED ENDS
ABBA01031662.1 ? CEN20_11 None wgs
   GAP TYPE-2 45 PAIRED ENDS
ABBA01031663.1 ? CEN20_11 None wgs
   GAP TYPE-2 20 PAIRED ENDS
ABBA01031664.1 ? CEN20_11 None wgs
   GAP TYPE-2 50 PAIRED ENDS
ABBA01031665.1 ? CEN20_11 None wgs
   GAP TYPE-2 50 PAIRED ENDS
ABBA01031666.1 ? CEN20_11 None wgs
   GAP TYPE-2 38 PAIRED ENDS
ABBA01031667.1 ? CEN20_11 None wgs
   GAP TYPE-2 393 PAIRED ENDS
ABBA01031668.1 ? CEN20_11 None wgs
   GAP TYPE-2 942 PAIRED ENDS
ABBA01031669.1 ? CEN20_11 None wgs
   GAP TYPE-2 93 PAIRED ENDS
ABBA01031670.1 ? CEN20_11 None wgs
   GAP TYPE-2 20 PAIRED ENDS
ABBA01031671.1 ? CEN20_11 None wgs
   GAP TYPE-2 267 PAIRED ENDS
   ABBA01031672.1 ? CEN20_11 MINUS wgs 4,351 1 99.862
AC011850.12 RP11-364J18 CEN20_11 WIBR fin 10,659 4 99.831
ABBA01031674.1 ? CEN20_11 None wgs
   GAP TYPE-3 100 ALIGN GENUS
ABBA01018540.1 ? CEN20_12 None wgs
   GAP TYPE-3 100 ALIGN GENUS
GJ212117.1 ? CEN20_13 None wgs
GAP CENTROMERE_DATA_END
GAP type-3
FP565326.9 RP11-1114A12 HSCHR20_CTG1_1 SC act 36,044 10 99.956 alignment exists; one or more unfinished sequences
AL121762.13 RP4-610C12 HSCHR20_CTG1_1 SC fin 100 0 100
   KF456878.1 ? HSCHR20_CTG1_1 CONTAINED in AL121762.13 unk 312 0 99.679 alignment length < 2000
   AL441988.11 RP11-348I14 HSCHR20_CTG1_1 CONTAINED_TURNOUT in ABBA01015426.1 fin 13,143 8 99.833
ABBA01015426.1 ? HSCHR20_CTG1_1 None wgs
   GAP TYPE-3 30949 ALIGN GENUS
AC018688.9 RP11-462H3 HSCHR20_CTG1_3 WUGSC fin 1,999 1 99.950 alignment length < 2000
AC092107.5 RP11-755J8 HSCHR20_CTG1_3 WUGSC fin
GAP TYPE-3
AC104301.2 RP11-150N22 HSCHR20_CTG1_7 UWGC fin
GAP TYPE-3
FO681521.2 CH17-294F12 HSCHR20_CTG2 SC fin
GAP type-2
AUXG01000201.1 ? HSCHR20_CTG2 None wgs
   GAP TYPE-2 2506 PAIRED ENDS
AUXG01000202.1 ? HSCHR20_CTG2 None wgs
   FP565421.3 ABC8-2141940I11 HSCHR20_CTG2 CONTAINED_TURNOUT in AUXG01000202.1 fin 28,244 33 99.692 contained sequence
AL121723.36 RP5-854E16 HSCHR20_CTG2 SC fin 100 0 100
   KF456873.1 ? HSCHR20_CTG2 CONTAINED in AL121723.36 unk 191 0 99.476 identity < 99.6%; alignment length < 2000
AL031650.22 RP5-1018D12 HSCHR20_CTG2 SC fin 100 0 100
AL121751.12 RP5-1093G12 HSCHR20_CTG2 SC fin 100 0 100
   KF456877.1 ? HSCHR20_CTG2 CONTAINED in AL121751.12 unk 316 0 99.684 alignment length < 2000
AL110115.38 RP3-324O17 HSCHR20_CTG2 SC fin 100 0 100
   KF456879.1 ? HSCHR20_CTG2 CONTAINED in AL110115.38 unk 309 0 99.676 alignment length < 2000
AL117381.32 RP5-857M17 HSCHR20_CTG2 SC fin 100 0 100
AL160175.5 RP11-243J16 HSCHR20_CTG2 SC fin 100 0 100
AL359765.6 RP11-1147I19 HSCHR20_CTG2 SC fin 100 0 100
AL031658.11 RP1-310O13 HSCHR20_CTG2 SC fin 100 0 100
AL353092.6 RP1-180I13 HSCHR20_CTG2 SC fin 100 0 100
AL049539.21 RP5-836N17 HSCHR20_CTG2 SC fin 100 0 100
AL121897.32 RP11-392M18 HSCHR20_CTG2 SC fin 100 0 100 half-dovetail of >0bp and <=50bp
AL354800.4 RP1-316I5 HSCHR20_CTG2 SC fin 100 0 100
AL121583.25 RP11-358N2 HSCHR20_CTG2 SC fin 100 0 100
   KF495689.1 ? HSCHR20_CTG2 CONTAINED in AL121583.25 unk 334 0 99.701 alignment length < 2000
AL034550.31 RP5-1184F4 HSCHR20_CTG2 SC fin 100 0 100
   KF511299.1 ? HSCHR20_CTG2 CONTAINED in AL034550.31 fin 76 1 100 alignment length < 2000
AL133343.23 RP11-410N8 HSCHR20_CTG2 SC fin 100 0 100 alignment length < 2000
   KF456884.1 ? HSCHR20_CTG2 CONTAINED in AL133343.23 unk 343 0 99.708 alignment length < 2000
FO393400.1 RP11-503P21 HSCHR20_CTG2 SC fin 2,000 0 100
BX640505.3 WI2-2350I3 HSCHR20_CTG2 SC fin 2,000 0 100
FQ976907.4 WI2-3344O2 HSCHR20_CTG2 SC fin 1,997 5 99.750 alignment length < 2000
AL035071.17 RP5-1085F17 HSCHR20_CTG2 SC fin 100 0 100
AL390298.13 RP11-75I24 HSCHR20_CTG2 SC fin 100 0 100
AL139826.15 RP11-60H7 HSCHR20_CTG2 SC fin 100 0 100
AL121756.14 RP4-726C3 HSCHR20_CTG2 SC fin 100 0 100
AL137225.12 RP4-733O23 HSCHR20_CTG2 SC fin 100 0 100
AL121901.20 RP11-49G10 HSCHR20_CTG2 SC fin 100 0 100
AL355392.7 RP5-1187J4 HSCHR20_CTG2 SC fin 99 0 100
AL162505.20 RP11-327D19 HSCHR20_CTG2 SC fin 100 0 100
AL034421.7 RP5-1137F22 HSCHR20_CTG2 SC fin 100 0 100
   KF456880.1 ? HSCHR20_CTG2 CONTAINED in AL034421.7 unk 579 0 99.827 alignment length < 2000
AL121906.18 RP1-63M2 HSCHR20_CTG2 SC fin 100 0 100
AL050349.27 RP4-553F4 HSCHR20_CTG2 SC fin 100 0 100
   KF456883.1 ? HSCHR20_CTG2 CONTAINED in AL050349.27 unk 303 0 99.670 alignment length < 2000
AL034549.19 RP5-1125A11 HSCHR20_CTG2 SC fin 100 0 100
AL031668.23 RP1-64K7 HSCHR20_CTG2 SC fin 100 0 100
   KF456886.1 ? HSCHR20_CTG2 CONTAINED in AL031668.23 unk 307 0 99.674 alignment length < 2000
AL035458.35 RP4-785G19 HSCHR20_CTG2 SC fin 100 0 100
AL356299.16 CTD-3216D2 HSCHR20_CTG2 SC fin 100 0 100
   KF456885.1 ? HSCHR20_CTG2 CONTAINED in AL356299.16 unk 124 0 99.194 identity < 99.6%; alignment length < 2000
   KF456881.1 ? HSCHR20_CTG2 CONTAINED in AL356299.16 unk 332 0 99.699 alignment length < 2000
AL109923.29 RP3-468O1 HSCHR20_CTG2 SC fin 100 0 100
   KF511300.1 ? HSCHR20_CTG2 CONTAINED in AL109923.29 fin 388 1 100 alignment length < 2000
AL136173.24 RP5-914B9 HSCHR20_CTG2 SC fin 101 0 100 half-dovetail of >0bp and <=50bp
   KF511301.1 ? HSCHR20_CTG2 CONTAINED in AL136173.24 fin 366 1 100 alignment length < 2000
AL118520.26 RP11-346K17 HSCHR20_CTG2 SC fin 100 0 100
AL109824.24 RP5-1181N3 HSCHR20_CTG2 SC fin 100 0 100
   KF511298.1 ? HSCHR20_CTG2 CONTAINED in AL109824.24 fin 265 1 100 alignment length < 2000
AL049709.18 RP1-18C9 HSCHR20_CTG2 SC fin 100 0 100
AL133324.13 RP5-1161H23 HSCHR20_CTG2 SC fin 100 0 100
AL132825.35 RP4-756N5 HSCHR20_CTG2 SC fin 100 0 100
   KF456882.1 ? HSCHR20_CTG2 CONTAINED in AL132825.35 unk 396 0 99.747 alignment length < 2000
AL135844.9 RP5-1154G13 HSCHR20_CTG2 SC fin 100 0 100
AL356652.19 RP11-42O4 HSCHR20_CTG2 SC fin 100 0 100
AL121753.32 RP4-614O4 HSCHR20_CTG2 SC fin 100 0 100 alignment length < 2000
AL121752.13 RP3-468N4 HSCHR20_CTG2 SC fin 100 0 100 alignment length < 2000
FO393401.1 RP11-563A22 HSCHR20_CTG2 SC fin 100 0 100 alignment length < 2000
AL109827.8 RP1-309K20 HSCHR20_CTG2 SC fin 100 0 100
AL357374.11 RP11-353C18 HSCHR20_CTG2 SC fin 100 0 100
AL356422.12 RP11-381P2 HSCHR20_CTG2 SC fin 100 0 100
AL078461.38 RP5-901O8 HSCHR20_CTG2 SC fin 100 0 100
AL109965.34 RP5-1121G12 HSCHR20_CTG2 SC fin 102 0 100
AL359828.13 RP5-954P9 HSCHR20_CTG2 SC fin 100 0 100
AL035420.15 RP4-550H1 HSCHR20_CTG2 SC fin 100 0 100
   KF456889.1 ? HSCHR20_CTG2 CONTAINED in AL035420.15 unk 322 0 99.689 alignment length < 2000
   KF456887.1 ? HSCHR20_CTG2 CONTAINED in AL035420.15 unk 555 0 99.820 alignment length < 2000
AL121895.26 RP11-234K24 HSCHR20_CTG2 SC fin 100 0 100
AL512784.6 CTD-2301L1 HSCHR20_CTG2 SC fin 1,999 1 100 alignment length < 2000
FP565784.3 ABC8-40969700C19 HSCHR20_CTG2 SC fin 4,494 3 99.889
JN854134.1 chr20:34360500-34380499_hg18 HSCHR20_CTG2 None unk 1,302 8 99.616 alignment length < 2000
FP565581.3 ABC8-40907700H4 HSCHR20_CTG2 SC fin 2,001 0 99.900
AL450465.12 RP3-493M24 HSCHR20_CTG2 SC fin 100 0 100
AL445705.8 RP5-996C2 HSCHR20_CTG2 SC fin 100 0 100
AL390374.16 CTD-2182L9 HSCHR20_CTG2 SC fin 100 0 100
AL050318.13 RP5-977B1 HSCHR20_CTG2 SC fin 100 0 100
   KF456888.1 ? HSCHR20_CTG2 CONTAINED in AL050318.13 unk 323 0 99.690 alignment length < 2000
   KF456890.1 ? HSCHR20_CTG2 CONTAINED in AL050318.13 unk 303 0 99.670 alignment length < 2000
AL031662.26 RP3-460J8 HSCHR20_CTG2 SC fin 101 0 100
AL132768.15 RP3-469A13 HSCHR20_CTG2 SC fin 99 1 100 simple sequence in gap
   KF456891.1 ? HSCHR20_CTG2 CONTAINED in AL132768.15 unk 268 0 99.627 alignment length < 2000
AL391602.6 RP11-231F10 HSCHR20_CTG2 SC fin 97 0 100 half-dovetail of >0bp and <=50bp
AL079335.29 RP1-132F21 HSCHR20_CTG2 SC fin 100 0 100
AL365505.15 RP11-382A12 HSCHR20_CTG2 SC fin 100 0 100
AL391114.12 RP11-332A4 HSCHR20_CTG2 SC fin 100 0 100
AL136172.16 RP4-621N11 HSCHR20_CTG2 SC fin 100 0 100
AL031659.9 RP3-343K2 HSCHR20_CTG2 SC fin 100 0 100
AL034422.24 RP5-1141E15 HSCHR20_CTG2 SC fin 100 0 100
AL390014.4 RP4-681F2 HSCHR20_CTG2 SC fin 100 0 100
AL133293.28 RP5-823N20 HSCHR20_CTG2 SC fin 100 0 100
   KF456893.1 ? HSCHR20_CTG2 CONTAINED in AL133293.28 unk 276 0 99.638 alignment length < 2000
   KF495798.1 ? HSCHR20_CTG2 CONTAINED in AL133293.28 unk 307 0 99.349 identity < 99.6%; alignment length < 2000
   KF511303.1 ? HSCHR20_CTG2 CONTAINED in AL133293.28 fin 343 1 100 alignment length < 2000
AL132873.9 RP4-592G19 HSCHR20_CTG2 SC fin 100 0 100 half-dovetail of >0bp and <=50bp
AL109614.28 RP11-425M5 HSCHR20_CTG2 SC fin 88 0 100
AL162293.22 RP4-640H8 HSCHR20_CTG2 SC fin 100 0 100
AL118499.39 RP5-1168M15 HSCHR20_CTG2 SC fin 96 0 100
   KF456892.1 ? HSCHR20_CTG2 CONTAINED in AL118499.39 unk 293 0 99.659 alignment length < 2000
AL023804.4 RP4-633O20 HSCHR20_CTG2 SC fin 100 0 100
AL109964.20 RP5-1118M15 HSCHR20_CTG2 SC fin 100 0 100
   KF456894.1 ? HSCHR20_CTG2 CONTAINED in AL109964.20 unk 597 0 99.832 alignment length < 2000
AL109823.23 RP5-1057B20 HSCHR20_CTG2 SC fin 104 0 100
AL031651.33 RP5-1054A22 HSCHR20_CTG2 SC fin 100 0 100
   KF456895.1 ? HSCHR20_CTG2 CONTAINED in AL031651.33 unk 286 0 99.650 alignment length < 2000
AL359555.9 CTD-2308N23 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%
AL583962.5 VLA2066F10L HSCHR20_CTG2 SC unk 100 0 100
AL499625.4 LA20-66F10 HSCHR20_CTG2 SC fin 100 0 100 alignment length < 2000
AL391095.6 RP13-218F6 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%; alignment length < 2000
AL049868.20 RP5-927M24 HSCHR20_CTG2 SC fin 100 0 100
AL035419.12 RP5-1100H13 HSCHR20_CTG2 SC fin 100 0 100
   KF456896.1 ? HSCHR20_CTG2 CONTAINED in AL035419.12 unk 287 0 99.652 alignment length < 2000
AL133519.28 RP11-122O1 HSCHR20_CTG2 SC fin 100 0 100
AL031657.5 RP1-28F12 HSCHR20_CTG2 SC fin 100 0 100
   KF456897.1 ? HSCHR20_CTG2 CONTAINED in AL031657.5 unk 317 0 99.685 alignment length < 2000
AL121889.8 RP5-1076E17 HSCHR20_CTG2 SC fin 100 0 100
AL023803.3 RP4-616B8 HSCHR20_CTG2 SC fin 100 0 100
AL136990.15 RP11-15D15 HSCHR20_CTG2 SC fin 100 0 100
AL035251.11 RP4-705O1 HSCHR20_CTG2 SC fin 100 0 100
AL121588.24 RP1-54G6 HSCHR20_CTG2 SC fin 100 0 100
AL031661.28 RP3-404H4 HSCHR20_CTG2 SC fin 96 0 100
AL109611.10 RP4-600E6 HSCHR20_CTG2 SC fin 100 0 100
   KF511302.1 ? HSCHR20_CTG2 CONTAINED in AL109611.10 fin 366 1 100 alignment length < 2000
AL132981.12 RP1-80L13 HSCHR20_CTG2 SC fin 100 0 100
AL139163.16 RP11-523O15 HSCHR20_CTG2 SC fin 100 0 100
AL118523.18 RP5-1031J8 HSCHR20_CTG2 SC fin 100 0 100
   KF456898.1 ? HSCHR20_CTG2 CONTAINED in AL118523.18 unk 314 0 99.682 alignment length < 2000
AL133419.15 RP11-101E14 HSCHR20_CTG2 SC fin 100 0 100
AL009050.9 RP1-191L6 HSCHR20_CTG2 SC fin 100 0 100
   KF511311.1 ? HSCHR20_CTG2 CONTAINED in AL009050.9 fin 384 1 100 alignment length < 2000
   KF456905.1 ? HSCHR20_CTG2 CONTAINED in AL009050.9 unk 206 0 99.515 identity < 99.6%; alignment length < 2000
AL121828.17 RP5-892M9 HSCHR20_CTG2 SC fin 100 0 100
   KF511310.1 ? HSCHR20_CTG2 CONTAINED in AL121828.17 fin 382 1 100 alignment length < 2000
   KF456900.1 ? HSCHR20_CTG2 CONTAINED in AL121828.17 unk 498 0 99.799 alignment length < 2000
   KF456901.1 ? HSCHR20_CTG2 CONTAINED in AL121828.17 unk 296 0 99.662 alignment length < 2000
AL031256.1 RP3-409O10 HSCHR20_CTG2 SC fin 100 0 100
AL118521.18 RP4-690O1 HSCHR20_CTG2 SC fin 100 0 100
AL049691.18 RP5-1123D4 HSCHR20_CTG2 SC fin 100 0 100
AL034552.23 RP5-824J5 HSCHR20_CTG2 SC fin 100 0 100
AL035665.32 RP4-644L1 HSCHR20_CTG2 SC fin 100 0 100
   KF456899.1 ? HSCHR20_CTG2 CONTAINED in AL035665.32 unk 367 0 99.728 alignment length < 2000
AL034431.16 RP5-970A17 HSCHR20_CTG2 SC fin 97 0 100
AL050317.16 RP1-94E24 HSCHR20_CTG2 SC fin 101 0 100
AL031660.16 RP3-387E22 HSCHR20_CTG2 SC fin 100 0 100
AL035652.8 RP1-1J6 HSCHR20_CTG2 SC fin 100 0 100
   KF456904.1 ? HSCHR20_CTG2 CONTAINED in AL035652.8 unk 264 0 99.621 alignment length < 2000
AL022394.3 RP3-511B24 HSCHR20_CTG2 SC fin 100 0 100
   KF456903.1 ? HSCHR20_CTG2 CONTAINED in AL022394.3 unk 314 0 99.682 alignment length < 2000
AL031257.1 RP4-796I11 HSCHR20_CTG2 SC fin 100 1 100 simple sequence in gap
AL132654.15 RP3-450M14 HSCHR20_CTG2 SC fin 100 0 100
AL031667.21 RP4-620E11 HSCHR20_CTG2 SC fin 100 0 100
AL121674.12 RP4-540H1 HSCHR20_CTG2 SC fin 100 0 100
   KF511304.1 ? HSCHR20_CTG2 CONTAINED in AL121674.12 fin 147 1 100 alignment length < 2000
AL031669.28 RP4-661I20 HSCHR20_CTG2 SC fin 100 0 100
   KF456907.1 ? HSCHR20_CTG2 CONTAINED in AL031669.28 unk 306 0 99.673 alignment length < 2000
AL354812.7 RP3-508O2 HSCHR20_CTG2 SC fin 100 0 100
AL133229.40 RP5-1167E19 HSCHR20_CTG2 SC fin 100 0 100
   KF510466.1 ? HSCHR20_CTG2 CONTAINED in AL133229.40 fin 383 1 100 alignment length < 2000
AL359984.5 RP11-179J15 HSCHR20_CTG2 SC fin 100 0 100
AL031654.6 RP1-128O17 HSCHR20_CTG2 SC fin 100 0 100
AL049812.14 RP5-1121H13 HSCHR20_CTG2 SC fin 100 0 100
AL024473.1 RP4-707K17 HSCHR20_CTG2 SC fin 100 0 100
AL035459.6 RP1-81G23 HSCHR20_CTG2 SC fin 100 0 100
   KF456910.1 ? HSCHR20_CTG2 CONTAINED in AL035459.6 unk 285 0 99.649 alignment length < 2000
Z93942.1 RP1-230I19 HSCHR20_CTG2 SC fin 100 0 100
   KF456906.1 ? HSCHR20_CTG2 CONTAINED in Z93942.1 unk 258 0 99.612 alignment length < 2000
AL022239.1 RP1-3E5 HSCHR20_CTG2 SC fin 100 0 100
AL109826.25 RP1-272H18 HSCHR20_CTG2 SC fin 100 0 100
   KF456908.1 ? HSCHR20_CTG2 CONTAINED in AL109826.25 unk 269 0 99.628 alignment length < 2000
AL035666.7 RP4-730D4 HSCHR20_CTG2 SC fin 100 0 100
AL031656.10 RP1-232N11 HSCHR20_CTG2 SC fin 100 0 100
AL136461.10 RP11-32G22 HSCHR20_CTG2 SC fin 100 0 100
AL121763.25 RP5-914M10 HSCHR20_CTG2 SC fin 100 0 100
   KF456909.1 ? HSCHR20_CTG2 CONTAINED in AL121763.25 unk 475 0 99.789 alignment length < 2000
   KF456902.1 ? HSCHR20_CTG2 CONTAINED in AL121763.25 unk 277 0 99.639 alignment length < 2000
AL031676.3 RP4-753D4 HSCHR20_CTG2 SC fin 98 0 100
   KF456911.1 ? HSCHR20_CTG2 CONTAINED in AL031676.3 unk 321 0 99.688 alignment length < 2000
   KF456914.1 ? HSCHR20_CTG2 CONTAINED in AL031676.3 unk 291 0 99.656 alignment length < 2000
   KF456915.1 ? HSCHR20_CTG2 CONTAINED in AL031676.3 unk 265 0 99.623 alignment length < 2000
AL117374.39 RP1-47A22 HSCHR20_CTG2 SC fin 100 0 100
AL359695.6 RP11-151A11 HSCHR20_CTG2 SC fin 100 0 100
AL021395.16 RP1-269M15 HSCHR20_CTG2 SC fin 104 0 100
AL138806.7 RP5-1121P14 HSCHR20_CTG2 SC fin 105 0 100
AL031681.16 RP5-862K6 HSCHR20_CTG2 SC fin 100 0 100
Z98752.16 RP1-138B7 HSCHR20_CTG2 SC fin 100 0 100
   KF456917.1 ? HSCHR20_CTG2 CONTAINED in Z98752.16 unk 319 0 99.687 alignment length < 2000
   KF456912.1 ? HSCHR20_CTG2 CONTAINED in Z98752.16 unk 154 0 99.351 identity < 99.6%; alignment length < 2000
AL121886.22 RP5-1028D15 HSCHR20_CTG2 SC fin 100 0 100
AL161944.22 RP5-1079N22 HSCHR20_CTG2 SC fin 100 0 100
AL035089.21 RP5-1030M6 HSCHR20_CTG2 SC fin 100 0 100
   KF456913.1 ? HSCHR20_CTG2 CONTAINED in AL035089.21 unk 284 0 99.648 alignment length < 2000
   KF456916.1 ? HSCHR20_CTG2 CONTAINED in AL035089.21 unk 269 0 99.628 alignment length < 2000
AL353797.5 RP3-485M8 HSCHR20_CTG2 SC fin 100 0 100
AL121587.19 RP3-495O3 HSCHR20_CTG2 SC fin 101 0 100
   KF456920.1 ? HSCHR20_CTG2 CONTAINED in AL121587.19 unk 307 0 99.674 alignment length < 2000
AL034419.22 RP5-1108D11 HSCHR20_CTG2 SC fin 103 0 99.029 identity < 99.6%
AL035447.6 RP5-1183I21 HSCHR20_CTG2 SC fin 100 0 100
AL035462.21 RP5-995J12 HSCHR20_CTG2 SC fin 101 0 100
   KF456919.1 ? HSCHR20_CTG2 CONTAINED in AL035462.21 unk 315 0 99.683 alignment length < 2000
AL117382.28 RP5-881L22 HSCHR20_CTG2 SC fin 100 0 100
   KF456918.1 ? HSCHR20_CTG2 CONTAINED in AL117382.28 unk 216 0 99.537 identity < 99.6%; alignment length < 2000
AL132772.14 RP5-1013A22 HSCHR20_CTG2 SC fin 100 0 100
Z97053.2 RP1-179M20 HSCHR20_CTG2 SC fin 100 0 100
   KF510471.1 ? HSCHR20_CTG2 CONTAINED in Z97053.2 fin 343 1 100 alignment length < 2000
   KF456921.1 ? HSCHR20_CTG2 CONTAINED in Z97053.2 unk 283 0 99.647 alignment length < 2000
AL139352.16 RP11-445H22 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%
AL118522.32 RP4-781B1 HSCHR20_CTG2 SC fin 100 0 100
   KF456927.1 ? HSCHR20_CTG2 CONTAINED in AL118522.32 unk 294 0 99.660 alignment length < 2000
AL008725.1 RP1-148E22 HSCHR20_CTG2 SC fin 159 0 100
AL109839.11 RP5-1069P2 HSCHR20_CTG2 SC fin 34,296 2 99.997 simple sequence in gap
Z93016.2 RP1-211D12 HSCHR20_CTG2 SC fin 100 0 100
AL049767.12 RP1-172H20 HSCHR20_CTG2 SC fin 100 0 100
AL035660.16 RP1-300I2 HSCHR20_CTG2 SC fin 100 0 100
   KF511309.1 ? HSCHR20_CTG2 CONTAINED in AL035660.16 fin 384 1 100 alignment length < 2000
AL021578.4 RP3-453C12 HSCHR20_CTG2 SC fin 102 0 100
   KF456923.1 ? HSCHR20_CTG2 CONTAINED in AL021578.4 unk 195 0 99.487 identity < 99.6%; alignment length < 2000
AL031663.2 RP3-461P17 HSCHR20_CTG2 SC fin 100 0 100
   KF511315.1 ? HSCHR20_CTG2 CONTAINED in AL031663.2 fin 381 1 100 alignment length < 2000
AL121778.12 RP5-839B11 HSCHR20_CTG2 SC fin 100 0 100
AL031671.12 RP4-688G8 HSCHR20_CTG2 SC fin 100 0 100 alignment length < 2000
AL109656.12 RP4-601O1 HSCHR20_CTG2 SC fin 432 1 99.537 identity < 99.6%; alignment length < 2000
AL050348.22 RP3-447F3 HSCHR20_CTG2 SC fin 100 0 100 alignment length < 2000
AL008726.3 RP3-337O18 HSCHR20_CTG2 SC fin 100 0 100
   KF456922.1 ? HSCHR20_CTG2 CONTAINED in AL008726.3 unk 590 0 99.831 alignment length < 2000
   KF456924.1 ? HSCHR20_CTG2 CONTAINED in AL008726.3 unk 171 0 99.415 identity < 99.6%; alignment length < 2000
AL162458.10 RP11-465L10 HSCHR20_CTG2 SC fin 100 0 100
AL035662.65 RP4-599F21 HSCHR20_CTG2 SC fin 100 0 100
AL031687.17 RP5-998H6 HSCHR20_CTG2 SC fin 100 0 100
AL445286.12 RP5-1005L2 HSCHR20_CTG2 SC fin 100 0 100
   KF511306.1 ? HSCHR20_CTG2 CONTAINED in AL445286.12 fin 366 1 100 alignment length < 2000
AL133227.15 RP11-394O2 HSCHR20_CTG2 SC fin 100 0 100
   KF510470.1 ? HSCHR20_CTG2 CONTAINED in AL133227.15 fin 331 1 100 alignment length < 2000
AL031686.2 RP5-981L23 HSCHR20_CTG2 SC fin 100 0 100
AL354745.11 RP11-179N14 HSCHR20_CTG2 SC fin 100 0 100
AL034424.9 RP1-257E24 HSCHR20_CTG2 SC fin 100 0 100
   KF495758.1 ? HSCHR20_CTG2 CONTAINED in AL034424.9 unk 366 0 99.454 identity < 99.6%; alignment length < 2000
AL133520.5 RP1-101A2 HSCHR20_CTG2 SC fin 100 0 100
AL031055.1 RP1-28H20 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%
AL359506.8 CTD-2007A7 HSCHR20_CTG2 SC fin 100 0 100
AL354766.17 RP11-323C15 HSCHR20_CTG2 SC fin 100 0 100
AL121776.19 RP5-1050K3 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%
   KF456926.1 ? HSCHR20_CTG2 CONTAINED in AL121776.19 unk 302 0 99.669 alignment length < 2000
   KF456925.1 ? HSCHR20_CTG2 CONTAINED in AL121776.19 unk 292 0 99.658 alignment length < 2000
AL359434.15 RP11-314A4 HSCHR20_CTG2 SC fin 100 0 100 alignment length < 2000
AL022342.7 RP1-29M10 HSCHR20_CTG2 SC fin 100 0 100 alignment length < 2000
AL031666.6 RP4-569M23 HSCHR20_CTG2 SC fin 101 0 100
   KF456930.1 ? HSCHR20_CTG2 CONTAINED in AL031666.6 unk 270 0 99.630 alignment length < 2000
   KF456929.1 ? HSCHR20_CTG2 CONTAINED in AL031666.6 unk 581 0 99.828 alignment length < 2000
AL109825.23 RP1-148H17 HSCHR20_CTG2 SC fin 100 0 100
AL353777.18 RP11-456N23 HSCHR20_CTG2 SC fin 114 0 100
AL021394.10 RP1-237J2 HSCHR20_CTG2 SC fin 100 0 100
AL034418.5 RP5-1049G16 HSCHR20_CTG2 SC fin 100 0 100
AL354813.31 CTD-2653D5 HSCHR20_CTG2 SC fin 100 0 100
AL121777.39 RP5-1057D4 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%
   KF456928.1 ? HSCHR20_CTG2 CONTAINED in AL121777.39 unk 541 0 99.815 alignment length < 2000
Z95330.11 RP1-73E16 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%
AL357558.6 RP11-347D21 HSCHR20_CTG2 SC fin 100 0 100
AL139351.37 RP11-321P16 HSCHR20_CTG2 SC fin 100 0 100
   KF511308.1 ? HSCHR20_CTG2 CONTAINED in AL139351.37 fin 393 1 100 alignment length < 2000
AL136102.10 RP3-453O12 HSCHR20_CTG2 SC fin 100 0 100
   KF456933.1 ? HSCHR20_CTG2 CONTAINED in AL136102.10 unk 267 0 99.625 alignment length < 2000
AL133341.12 RP3-342O24 HSCHR20_CTG2 SC fin 101 0 100
AL121888.20 RP5-1050C22 HSCHR20_CTG2 SC fin 100 0 100
   KF456934.1 ? HSCHR20_CTG2 CONTAINED in AL121888.20 unk 270 0 99.630 alignment length < 2000
   KF456935.1 ? HSCHR20_CTG2 CONTAINED in AL121888.20 unk 316 0 99.684 alignment length < 2000
AL137078.20 RP1-66N13 HSCHR20_CTG2 SC fin 100 0 100 alignment length < 2000
   KF511307.1 ? HSCHR20_CTG2 CONTAINED in AL137078.20 fin 378 1 100 alignment length < 2000
AL049541.25 RP5-991B18 HSCHR20_CTG2 SC fin 100 0 100 alignment length < 2000
AL445192.3 RP11-269H4 HSCHR20_CTG2 SC fin 100 0 100
AL035106.28 RP5-998C11 HSCHR20_CTG2 SC fin 100 0 100
   KF511314.1 ? HSCHR20_CTG2 CONTAINED in AL035106.28 fin 335 1 100 alignment length < 2000
AL133342.14 RP5-906C1 HSCHR20_CTG2 SC fin 100 0 100
AL049537.48 RP5-1164I10 HSCHR20_CTG2 SC fin 100 0 100
   KF456932.1 ? HSCHR20_CTG2 CONTAINED in AL049537.48 unk 411 0 99.757 alignment length < 2000
AL121903.13 RP1-155G6 HSCHR20_CTG2 SC fin 100 0 100
AL133174.15 RP3-470L14 HSCHR20_CTG2 SC fin 98 1 100
AL357560.11 RP11-120I11 HSCHR20_CTG2 SC fin 100 0 100
AL049766.14 RP4-686N3 HSCHR20_CTG2 SC fin 101 0 100
AL121786.10 RP5-993C19 HSCHR20_CTG2 SC fin 101 0 100
AL035685.21 RP4-791K14 HSCHR20_CTG2 SC fin 100 0 100
   KF456931.1 ? HSCHR20_CTG2 CONTAINED in AL035685.21 unk 270 0 99.630 alignment length < 2000
AL118525.17 RP11-298O6 HSCHR20_CTG2 SC fin 100 0 100
AL035683.9 RP5-1063B2 HSCHR20_CTG2 SC fin 100 0 100
AL162615.13 RP5-1041C10 HSCHR20_CTG2 SC fin 100 0 100
AL031685.18 RP5-963K23 HSCHR20_CTG2 SC fin 100 0 100
AL121712.27 RP4-710H13 HSCHR20_CTG2 SC fin 100 0 100
AL034423.21 RP5-1185N5 HSCHR20_CTG2 SC fin 100 0 100
   KF456937.1 ? HSCHR20_CTG2 CONTAINED in AL034423.21 unk 276 0 99.638 alignment length < 2000
AL161937.13 RP11-112L6 HSCHR20_CTG2 SC fin 100 0 100
AL354889.14 RP11-290F20 HSCHR20_CTG2 SC fin 100 0 100
AL034429.1 RP5-894K16 HSCHR20_CTG2 SC fin 101 0 100
AL133230.25 RP4-530I15 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%
   KF456940.1 ? HSCHR20_CTG2 CONTAINED in AL133230.25 unk 299 0 99.666 alignment length < 2000
AL353653.19 RP11-244L4 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%
AL031680.20 RP5-850H21 HSCHR20_CTG2 SC fin 100 0 100
AL133228.18 RP5-1071L10 HSCHR20_CTG2 SC fin 100 0 100
   KF456936.1 ? HSCHR20_CTG2 CONTAINED in AL133228.18 unk 374 0 99.733 alignment length < 2000
   KF456950.1 ? HSCHR20_CTG2 CONTAINED in AL133228.18 unk 389 0 99.743 alignment length < 2000
AL034553.12 RP5-914P20 HSCHR20_CTG2 SC fin 100 0 100
   KF456941.1 ? HSCHR20_CTG2 CONTAINED in AL034553.12 unk 317 0 99.685 alignment length < 2000
AL050404.3 RP5-955M13 HSCHR20_CTG2 SC fin 100 0 100
AL121785.48 RP4-811M8 HSCHR20_CTG2 SC fin 100 0 100
   KF456938.1 ? HSCHR20_CTG2 CONTAINED in AL121785.48 unk 268 0 99.627 alignment length < 2000
   KF456939.1 ? HSCHR20_CTG2 CONTAINED in AL121785.48 unk 378 0 99.735 alignment length < 2000
   KF456948.1 ? HSCHR20_CTG2 CONTAINED in AL121785.48 unk 135 0 99.259 identity < 99.6%; alignment length < 2000
AL121915.8 RP5-1193N1 HSCHR20_CTG2 SC fin 100 0 100
AL035457.13 RP5-1106N18 HSCHR20_CTG2 SC fin 100 0 100
AL079339.11 RP5-906P16 HSCHR20_CTG2 SC fin 100 0 100
AL035682.16 RP5-1009H6 HSCHR20_CTG2 SC fin 101 0 100
AL132866.29 RP5-994O24 HSCHR20_CTG2 SC fin 101 0 100
   KF456943.1 ? HSCHR20_CTG2 CONTAINED in AL132866.29 unk 227 0 99.559 identity < 99.6%; alignment length < 2000
   KF510469.1 ? HSCHR20_CTG2 CONTAINED in AL132866.29 fin 376 1 100 alignment length < 2000
   KF510472.1 ? HSCHR20_CTG2 CONTAINED in AL132866.29 fin 383 1 100 alignment length < 2000
   KF456946.1 ? HSCHR20_CTG2 CONTAINED in AL132866.29 unk 310 0 99.677 alignment length < 2000
   KF456949.1 ? HSCHR20_CTG2 CONTAINED in AL132866.29 unk 296 0 99.662 alignment length < 2000
AL035684.25 RP5-1114A1 HSCHR20_CTG2 SC fin 100 0 100
AL138807.12 RP5-827A12 HSCHR20_CTG2 SC fin 100 0 100
AL353799.14 RP5-1019A8 HSCHR20_CTG2 SC fin 100 0 100
AL034420.16 RP5-1112F19 HSCHR20_CTG2 SC fin 100 0 100
AL356354.10 RP4-651A20 HSCHR20_CTG2 SC fin 100 0 100
AL035072.16 RP4-756P4 HSCHR20_CTG2 SC fin 100 0 100
AL109984.14 RP5-831D17 HSCHR20_CTG2 SC fin 111 0 100
AL121771.17 RP4-548G19 HSCHR20_CTG2 SC fin 100 0 100
AL121923.7 RP4-698O15 HSCHR20_CTG2 SC fin 100 0 100
AL035686.15 RP5-965N20 HSCHR20_CTG2 SC fin 100 0 100
AL109977.7 RP4-591F14 HSCHR20_CTG2 SC fin 100 0 100
   KF456944.1 ? HSCHR20_CTG2 CONTAINED in AL109977.7 unk 272 0 99.632 alignment length < 2000
AL109610.7 RP4-583K8 HSCHR20_CTG2 SC fin 91 0 100
AL049765.16 RP5-1022J11 HSCHR20_CTG2 SC fin 97 0 100
AL049736.10 RP4-723E3 HSCHR20_CTG2 SC fin 100 0 100
AL031674.1 RP4-715N11 HSCHR20_CTG2 SC fin 100 0 100
   KF456951.1 ? HSCHR20_CTG2 CONTAINED in AL031674.1 unk 545 0 99.817 alignment length < 2000
   KF456942.1 ? HSCHR20_CTG2 CONTAINED in AL031674.1 unk 517 0 99.807 alignment length < 2000
AL161945.31 RP4-606D23 HSCHR20_CTG2 SC fin 100 0 100
AL121902.13 RP11-80K6 HSCHR20_CTG2 SC fin 100 0 100
AL050316.15 RP5-911I5 HSCHR20_CTG2 SC fin 100 0 100
   KF456955.1 ? HSCHR20_CTG2 CONTAINED in AL050316.15 unk 235 0 99.574 identity < 99.6%; alignment length < 2000
AL391097.13 RP11-15M15 HSCHR20_CTG2 SC fin 2,000 1 99.750
BX276189.1 RP4-678D15 HSCHR20_CTG2 SC fin 2,000 0 100
   KF456947.1 ? HSCHR20_CTG2 CONTAINED in BX276189.1 unk 493 0 99.797 alignment length < 2000
AL354772.4 RP4-705J15 HSCHR20_CTG2 SC fin 100 0 100
AL109930.8 RP4-669H2 HSCHR20_CTG2 SC fin 100 0 100
   KF511313.1 ? HSCHR20_CTG2 CONTAINED in AL109930.8 fin 200 1 100 alignment length < 2000
AL354993.24 RP5-823G15 HSCHR20_CTG2 SC fin 100 0 100
   KF510477.1 ? HSCHR20_CTG2 CONTAINED in AL354993.24 fin 137 1 100 alignment length < 2000
AL157838.24 RP4-724E16 HSCHR20_CTG2 SC fin 42,233 12 99.967 simple sequence in gap
AC005808.1 ? HSCHR20_CTG2 JGI fin 2,297 2 99.826 simple sequence in gap
   KF456945.1 ? HSCHR20_CTG2 CONTAINED in AC005808.1 unk 296 0 99.662 alignment length < 2000
AC005914.1 ? HSCHR20_CTG2 JGI fin 1,259 0 100
   KC877762.1 ? HSCHR20_CTG2 CONTAINED in AC005914.1 unk 62 0 98.387 identity < 99.6%; alignment length < 2000
   KC877765.1 ? HSCHR20_CTG2 CONTAINED in AC005914.1 unk 566 0 99.823 alignment length < 2000
AC006076.1 ? HSCHR20_CTG2 JGI fin 2,320 0 100
AC004762.1 ? HSCHR20_CTG2 JGI fin 871 0 99.885
AC005220.1 ? HSCHR20_CTG2 JGI fin 1,385 0 100
AC004501.1 ? HSCHR20_CTG2 JGI fin 100 0 98.000 identity < 99.6%; alignment length < 2000
   KF495690.1 ? HSCHR20_CTG2 CONTAINED in AC004501.1 unk 268 0 99.627 alignment length < 2000
AL354801.5 RP4-700G13 HSCHR20_CTG2 SC fin 100 0 100
AL138805.8 RP5-1075G21 HSCHR20_CTG2 SC fin 100 0 100
AL133335.29 RP5-1162C3 HSCHR20_CTG2 SC fin 100 0 100
AL389883.9 RP11-126L5 HSCHR20_CTG2 SC fin 100 0 100
AL121922.16 RP4-647O12 HSCHR20_CTG2 SC fin 100 0 100
AL442131.2 RP11-66F1 HSCHR20_CTG2 SC fin 100 0 100
AL162292.20 RP11-6L15 HSCHR20_CTG2 SC fin 100 0 100
AL118501.22 RP5-1191N16 HSCHR20_CTG2 SC fin 101 0 100
   KF456953.1 ? HSCHR20_CTG2 CONTAINED in AL118501.22 unk 269 0 99.628 alignment length < 2000
AL035667.12 RP4-805C22 HSCHR20_CTG2 SC fin 102 0 100
AL133420.28 RP5-904D7 HSCHR20_CTG2 SC fin 100 0 100
   KF456954.1 ? HSCHR20_CTG2 CONTAINED in AL133420.28 unk 225 0 99.556 identity < 99.6%; alignment length < 2000
AL138809.18 RP5-981M18 HSCHR20_CTG2 SC fin 101 0 100
AL162294.8 RP5-852L11 HSCHR20_CTG2 SC fin 100 0 100
AL121593.10 RP4-800C24 HSCHR20_CTG2 SC fin 100 0 100
AL158015.9 RP11-195N11 HSCHR20_CTG2 SC fin 100 0 100
AL035663.18 RP4-611N7 HSCHR20_CTG2 SC fin 100 0 100
AL161801.11 RP11-46G14 HSCHR20_CTG2 SC fin 100 0 100
AL121826.11 RP5-1010E17 HSCHR20_CTG2 SC fin 100 0 100
   KF511316.1 ? HSCHR20_CTG2 CONTAINED in AL121826.11 fin 305 1 100 alignment length < 2000
AL160413.7 RP5-837G17 HSCHR20_CTG2 SC fin 94 0 100 half-dovetail of >0bp and <=50bp
   AC232301.2 ABC8-714822F8 HSCHR20_CTG2 CONTAINED in AL160413.7 fin 692 0 99.855 alignment length < 2000
   AC232307.2 ABC7-42749900J23 HSCHR20_CTG2 CONTAINED in AL160413.7 fin 276 1 99.638 approved certificate; half-dovetail of >50bp
AL356388.9 CTD-2022J23 HSCHR20_CTG2 SC fin 100 0 100
AL109829.21 RP5-832E24 HSCHR20_CTG2 SC fin 100 0 100
   KF511318.1 ? HSCHR20_CTG2 CONTAINED in AL109829.21 fin 252 1 100 alignment length < 2000
   KF511317.1 ? HSCHR20_CTG2 CONTAINED in AL109829.21 fin 142 1 100 alignment length < 2000
AL109828.22 RP4-586J11 HSCHR20_CTG2 SC fin 100 0 100
   KF456956.1 ? HSCHR20_CTG2 CONTAINED in AL109828.22 unk 190 0 99.474 identity < 99.6%; alignment length < 2000
AL121591.3 RP4-706G20 HSCHR20_CTG2 SC fin 103 0 99.029 identity < 99.6%
AL353640.7 RP11-458E15 HSCHR20_CTG2 SC fin 100 0 100
AL117383.19 RP5-885A10 HSCHR20_CTG2 SC fin 100 0 100
   KF456957.1 ? HSCHR20_CTG2 CONTAINED in AL117383.19 unk 290 0 99.655 alignment length < 2000
   KF456958.1 ? HSCHR20_CTG2 CONTAINED in AL117383.19 unk 269 0 99.628 alignment length < 2000
AL139824.22 RP11-380D15 HSCHR20_CTG2 SC fin 100 0 100
AL359534.10 RP11-65K20 HSCHR20_CTG2 SC fin 100 0 100
AL121914.31 RP5-1167H4 HSCHR20_CTG2 SC fin 100 0 100
   KF456952.1 ? HSCHR20_CTG2 CONTAINED in AL121914.31 unk 304 0 99.671 alignment length < 2000
AL109806.22 RP5-1153D9 HSCHR20_CTG2 SC fin 100 0 100
AL137162.25 RP5-843L14 HSCHR20_CTG2 SC fin 100 0 100
AL121920.21 RP4-539E24 HSCHR20_CTG2 SC fin 100 0 100
AL133232.15 RP5-897D18 HSCHR20_CTG2 SC fin 100 0 100
AL161657.22 RP11-46O3 HSCHR20_CTG2 SC fin 100 0 100
AL117380.28 RP4-749H19 HSCHR20_CTG2 SC fin 100 0 100
AL157414.19 RP11-560A15 HSCHR20_CTG2 SC fin 98 1 100 simple sequence in gap
AL122058.19 RP4-813D12 HSCHR20_CTG2 SC fin 100 0 100
AL135939.12 RP3-481F12 HSCHR20_CTG2 SC fin 100 0 100
AL109955.38 RP4-800J21 HSCHR20_CTG2 SC fin 100 0 100
   KF456962.1 ? HSCHR20_CTG2 CONTAINED in AL109955.38 unk 593 0 99.831 alignment length < 2000
AL160176.3 RP4-579F20 HSCHR20_CTG2 SC fin 100 0 100
   KF456961.1 ? HSCHR20_CTG2 CONTAINED in AL160176.3 unk 301 0 99.668 alignment length < 2000
   KF456964.1 ? HSCHR20_CTG2 CONTAINED in AL160176.3 unk 282 0 99.645 alignment length < 2000
AL035541.15 RP4-718J7 HSCHR20_CTG2 SC fin 100 0 100
AL161943.11 RP5-1007E6 HSCHR20_CTG2 SC fin 100 0 100
AL121913.4 RP5-1059L7 HSCHR20_CTG2 SC fin 100 0 100
AL162291.14 RP11-402F1 HSCHR20_CTG2 SC fin 100 0 100
AL354984.17 RP13-379L11 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%
AL354776.15 RP11-196N14 HSCHR20_CTG2 SC fin 100 0 100
AL354834.17 RP11-109J9 HSCHR20_CTG2 SC fin 100 0 100
AL035455.30 RP5-1018E9 HSCHR20_CTG2 SC fin 100 0 100
   KF456960.1 ? HSCHR20_CTG2 CONTAINED in AL035455.30 unk 283 0 99.647 alignment length < 2000
AL118513.17 RP4-685L9 HSCHR20_CTG2 SC fin 100 0 100
   KF456963.1 ? HSCHR20_CTG2 CONTAINED in AL118513.17 unk 302 0 99.669 alignment length < 2000
AL050327.6 RP5-907D15 HSCHR20_CTG2 SC fin 100 0 100
AL139349.37 RP11-261P9 HSCHR20_CTG2 SC fin 100 0 100
   KF456959.1 ? HSCHR20_CTG2 CONTAINED in AL139349.37 unk 383 0 99.739 alignment length < 2000
   KF456966.1 ? HSCHR20_CTG2 CONTAINED in AL139349.37 unk 385 0 99.740 alignment length < 2000
AL132655.13 RP4-806M20 HSCHR20_CTG2 SC fin 100 0 100
   KF511319.1 ? HSCHR20_CTG2 CONTAINED in AL132655.13 fin 386 1 100 alignment length < 2000
AL121917.20 RP1-309F20 HSCHR20_CTG2 SC fin 100 0 100
   KF456967.1 ? HSCHR20_CTG2 CONTAINED in AL121917.20 unk 297 0 99.663 alignment length < 2000
AL109840.24 RP4-543J19 HSCHR20_CTG2 SC fin 100 0 100
   KF495837.1 ? HSCHR20_CTG2 CONTAINED in AL109840.24 unk 564 0 99.645 alignment length < 2000
AL136532.22 RP11-379F14 HSCHR20_CTG2 SC fin 100 0 100
AL121919.20 RP3-492J12 HSCHR20_CTG2 SC fin 100 0 100
   KF456965.1 ? HSCHR20_CTG2 CONTAINED in AL121919.20 unk 267 0 99.625 alignment length < 2000
AL035250.20 RP4-614C15 HSCHR20_CTG2 SC fin 100 0 100
AL160410.24 RP11-136B8 HSCHR20_CTG2 SC fin 100 0 100
AL389889.11 RP11-164D18 HSCHR20_CTG2 SC fin 100 0 100
AL121908.16 RP4-719C8 HSCHR20_CTG2 SC fin 100 0 100
   KF456968.1 ? HSCHR20_CTG2 CONTAINED in AL121908.16 unk 176 0 99.432 identity < 99.6%; alignment length < 2000
   KF456969.1 ? HSCHR20_CTG2 CONTAINED in AL121908.16 unk 330 0 99.697 alignment length < 2000
AL357503.12 RP5-899C14 HSCHR20_CTG2 SC fin 100 0 100
   KF456971.1 ? HSCHR20_CTG2 CONTAINED in AL357503.12 unk 532 0 99.812 alignment length < 2000
AL158092.30 RP5-884F15 HSCHR20_CTG2 SC fin 100 0 100
AL109928.33 RP4-551D2 HSCHR20_CTG2 SC fin 100 0 100
   KF456972.1 ? HSCHR20_CTG2 CONTAINED in AL109928.33 unk 302 0 99.669 alignment length < 2000
AL353677.8 RP11-231A2 HSCHR20_CTG2 SC fin 100 0 100
AL132822.15 RP5-1017F8 HSCHR20_CTG2 SC fin 100 0 100
   KF456970.1 ? HSCHR20_CTG2 CONTAINED in AL132822.15 unk 253 0 99.605 alignment length < 2000
   KF510474.1 ? HSCHR20_CTG2 CONTAINED in AL132822.15 fin 375 1 100 alignment length < 2000
   KF510473.1 ? HSCHR20_CTG2 CONTAINED in AL132822.15 fin 366 1 100 alignment length < 2000
   KF510475.1 ? HSCHR20_CTG2 CONTAINED in AL132822.15 fin 373 1 100 alignment length < 2000
AL035070.3 RP5-1043L13 HSCHR20_CTG2 SC fin 100 0 100
   KF456974.1 ? HSCHR20_CTG2 CONTAINED in AL035070.3 unk 298 0 99.664 alignment length < 2000
   KF456976.1 ? HSCHR20_CTG2 CONTAINED in AL035070.3 unk 490 0 99.796 alignment length < 2000
   KF456975.1 ? HSCHR20_CTG2 CONTAINED in AL035070.3 unk 308 0 99.675 alignment length < 2000
   KF456977.1 ? HSCHR20_CTG2 CONTAINED in AL035070.3 unk 302 0 99.669 alignment length < 2000
   AMYH02037389.1 ? HSCHR20_CTG2 CONTAINED in AL035070.3 wgs 117,205 4 99.990
AL121918.26 RP3-342K12 HSCHR20_CTG2 SC fin 100 0 100
AL136143.9 RP3-399C22 HSCHR20_CTG2 SC fin 100 0 100
   KF456978.1 ? HSCHR20_CTG2 CONTAINED in AL136143.9 unk 282 0 99.645 alignment length < 2000
AL358237.13 RP3-407G6 HSCHR20_CTG2 SC fin 100 0 100
AL161940.6 RP11-459I16 HSCHR20_CTG2 SC fin 100 0 100
AL117372.35 RP5-1016A21 HSCHR20_CTG2 SC fin 100 0 100
   KF511321.1 ? HSCHR20_CTG2 CONTAINED in AL117372.35 fin 384 1 100 alignment length < 2000
   KF511322.1 ? HSCHR20_CTG2 CONTAINED in AL117372.35 fin 356 1 100 alignment length < 2000
AL139348.3 RP11-151E14 HSCHR20_CTG2 SC fin 100 0 100
AL050326.3 RP5-836E13 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%
AL121910.26 RP5-827L5 HSCHR20_CTG2 SC fin 100 0 100
   KF456973.1 ? HSCHR20_CTG2 CONTAINED in AL121910.26 unk 289 0 99.654 alignment length < 2000
AL121887.24 RP5-1040G13 HSCHR20_CTG2 SC fin 100 0 100
   KF456980.1 ? HSCHR20_CTG2 CONTAINED in AL121887.24 unk 307 0 99.674 alignment length < 2000
   KF456983.1 ? HSCHR20_CTG2 CONTAINED in AL121887.24 unk 267 0 99.625 alignment length < 2000
AL365229.13 RP11-723K16 HSCHR20_CTG2 SC fin 100 0 100
AL450463.20 RP13-299C14 HSCHR20_CTG2 SC fin 600 0 100
BX640515.3 WI2-2743D9 HSCHR20_CTG2 SC fin 3,045 1 99.869 half-dovetail of >0bp and <=50bp
AL391316.7 CEPHY-901F10 HSCHR20_CTG2 SC fin 100 0 100
AL160412.14 RP5-827E24 HSCHR20_CTG2 SC fin 100 0 100
AL079336.27 RP4-662M14 HSCHR20_CTG2 SC fin 100 0 100
   KF456979.1 ? HSCHR20_CTG2 CONTAINED in AL079336.27 unk 366 0 99.727 alignment length < 2000
   KF456982.1 ? HSCHR20_CTG2 CONTAINED in AL079336.27 unk 314 0 99.682 alignment length < 2000
AL162457.11 RP11-429E11 HSCHR20_CTG2 SC fin 100 0 100
AL365401.20 RP11-489M19 HSCHR20_CTG2 SC fin 100 0 100
+A AL109911.47 RP5-1107C24 HSCHR20_CTG2 SC fin 100 0 100
   +A KF510476.1 ? HSCHR20_CTG2 CONTAINED in AL109911.47 fin 378 2 100 alignment length < 2000
   KF511320.1 ? HSCHR20_CTG2 CONTAINED in AL109911.47 fin 217 1 100 alignment length < 2000
   +A KF456986.1 ? HSCHR20_CTG2 CONTAINED in AL109911.47 unk 137 0 99.270 identity < 99.6%; alignment length < 2000
AL137077.31 RP11-11M20 HSCHR20_CTG2 SC fin 100 0 100
AL078633.32 RP5-1005F21 HSCHR20_CTG2 SC fin 100 0 100
AL354836.13 RP11-157P1 HSCHR20_CTG2 SC fin 100 0 100
AL121832.56 RP5-908M14 HSCHR20_CTG2 SC fin 100 0 100
AL499627.23 RP13-379O24 HSCHR20_CTG2 SC fin 10,328 1 99.942
AC161429.3 WI2-3415J14 HSCHR20_CTG2 UWGC fin 3,225 0 100
AL449263.6 RP3-353C17 HSCHR20_CTG2 SC fin 2,000 1 99.850 simple sequence in gap
BX640514.3 WI2-1780D16 HSCHR20_CTG2 SC fin 30,735 0 100
   KF456981.1 ? HSCHR20_CTG2 CONTAINED in BX640514.3 unk 359 0 99.721 alignment length < 2000
AC174062.1 WI2-2567G18 HSCHR20_CTG2 UWGC fin 8,741 12 99.920 approved certificate; >0 gap of 500bp or more, not simple sequence
JN854136.1 chr20:60623815-60733814_hg18 HSCHR20_CTG2 None unk 2,896 1 99.965
FP565323.3 ABC13-48057300M21 HSCHR20_CTG2 SC fin 2,000 0 100
AL450469.11 RP13-30A9 HSCHR20_CTG2 SC fin 100 0 100
AL357033.19 RP11-93B14 HSCHR20_CTG2 SC fin 100 0 99.000 identity < 99.6%
AL035669.43 RP5-885L7 HSCHR20_CTG2 SC fin 100 0 100
AL117379.14 RP4-563E14 HSCHR20_CTG2 SC fin 100 0 100
AL121673.41 RP11-305P22 HSCHR20_CTG2 SC fin 100 0 100
   KF456990.1 ? HSCHR20_CTG2 CONTAINED in AL121673.41 unk 337 0 99.703 alignment length < 2000
AL096828.29 RP5-963E22 HSCHR20_CTG2 SC fin 100 0 100
AL121827.34 RP11-261N11 HSCHR20_CTG2 SC fin 100 0 100
   KF510479.1 ? HSCHR20_CTG2 CONTAINED in AL121827.34 fin 386 1 100 alignment length < 2000
   KF456987.1 ? HSCHR20_CTG2 CONTAINED in AL121827.34 unk 384 0 99.740 alignment length < 2000
+A AL353658.33 RP11-358D14 HSCHR20_CTG2 SC fin 100 0 100
AL121829.30 RP4-697K14 HSCHR20_CTG2 SC fin 100 0 100
AL121907.28 RP4-663D7 HSCHR20_CTG2 SC fin 100 0 100
AL353715.21 CTD-3184A7 HSCHR20_CTG2 SC fin 100 0 100
AL121845.20 RP4-583P15 HSCHR20_CTG2 SC fin 100 0 100
   KF511326.1 ? HSCHR20_CTG2 CONTAINED in AL121845.20 fin 386 1 100 alignment length < 2000
   KF510480.1 ? HSCHR20_CTG2 CONTAINED in AL121845.20 fin 383 1 100 alignment length < 2000
AL158091.31 RP5-824A14 HSCHR20_CTG2 SC fin 100 0 100
AL118506.27 RP4-591C20 HSCHR20_CTG2 SC fin 100 0 100
   KF456985.1 ? HSCHR20_CTG2 CONTAINED in AL118506.27 unk 628 0 99.841 alignment length < 2000
AL356790.22 RP11-238J15 HSCHR20_CTG2 SC fin 92 0 100 half-dovetail of >0bp and <=50bp
AL355803.16 RP13-152O15 HSCHR20_CTG2 SC fin 100 0 100
AL590548.22 RP11-299N6 HSCHR20_CTG2 SC fin 100 0 100
+A AL121581.41 RP5-1022E24 HSCHR20_CTG2 SC fin 100 0 100
AL137028.9 RP11-476I15 HSCHR20_CTG2 SC fin
? ABC9-41279100E15 HSCHR20_CTG2
GAP type-3
GAP TELOMERE 10000