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Alignment last updated: 08/02/2013 18:06:31

Join Legend

  • Red circle Serious alignment problem, requires review. (details...)
    • Zero, or more than one, overlaps
    • Half dove-tail >50 bp
    • Alignment identity <98%
    • Alignment length <50 bp
    • >2 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Yellow circle Minor alignment problem. (details...)
    • Exactly one overlap
    • Half dove-tail >0 bp and <=50bp
    • Alignment identity <99.6%
    • Alignment length <2000 bp
    • >0 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Green circle Excellent alignment, meets all defined criteria. (details...)
    • Exactly one RuleInfo
    • Half dove-tail <=0 bp
    • Alignment identity >=99.6%
    • Alignment length >=2000 bp
    • <=0 gaps, each gap >25 bp, not marked as an SSR
    • <=0 gaps, each gap >50 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, marked as an SSR
  • Black circle Certificate submitted, not yet approved.
  • Purple circle Certificate submitted and approved.
  • Gray circle Valid, contained clone
  • White circle Join not evaluated due to one accession not being finished.

Alignment for AL096792.5 and KF456809.1

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AL096792.5 Human DNA sequence from clone RP5-1067P23 on chromosome 20, complete sequence [htgs_phase3]

Length: 101,342 bp

KF456809.1 Homo sapiens chromosome 20 WGS contig WGS_CEU_AL096792.5_491 genomic sequence [unknown]

Length: 299 bp

Alignment Summary

Join evaluation: yellow (alignment length < 2000)

Alignment count: 1

Go to Endhit Table

  • Alignment 1
  • Align ID: 108438
  • Total Length: 299
  • Aligned Length: 299
  • Percent Identity: 99.6656
  • Number of Gaps: 0
  • Number of Mismatches: 1
  • Contained: True
  • Source: CtgOverlap Seq-Align
  • Valid Switchpoint: true (A)
  • Valid Switchpoint: true (A)
Overlap Image

Switch Points
TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
A6251-+chenhcTaxid 9606 chrom 20 Primary assembly2013-08-02 18:06:31.430108766108438GRCh38
A325299+-chenhcTaxid 9606 chrom 20 Primary assembly2013-08-02 18:06:31.480108767108438GRCh38


down arrow

Alignment 1 of 1

 AL096792.5 : - : 624..326
 KF456809.1 : + : 1..299
 Mismatches = 1, Gaps = 0, Length = 299
 Percent identity = 99.67%
 Score = 547.7 bits (296), Expect = 3.743e-158
  0 BAC and 0 Fosmid bridging clones.
  0 BAC and 0 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AL096792.5 <624     ctattctattagaacaccctgttttatttattttctccactaaaacccactagagagctc 565    
KF456809.1 >1       ............................................................ 60     

AL096792.5 <564     tgaagttatagaaccacagcagcagtgtgtttctatggtcacagatgcttgattattaga 505    
KF456809.1 >61      ............................................................ 120    

AL096792.5 <504     gggttaagatgggagtataacatgtatagggaggagagaaactaacctgttattgatcac 445    
KF456809.1 >121     .............g.............................................. 180    

AL096792.5 <444     atggggacttggccacctacttggggtcactggctgggacctcagtagcagagcaggaga 385    
KF456809.1 >181     ............................................................ 240    

AL096792.5 <384     gaaaggggagaaatggtctccagttctgagcttacaagaagagcaggtaaaattgggct 326    
KF456809.1 >241     ........................................................... 299    



Events
IdTypeDateWhodidComment
259255InitHasAlign07/30/2013 16:20:24cgi_chen
find_overlap 1.35 2010/07/22 15:00:43 boukn Exp $ built Apr 29 2013. Toolkit wrapper  using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib
Info: Blast Including ID: 5578918
Info: Running Blast Filter: 0
Info: Determined ID: gi|5578918 needs Merging.
Info: Blast Warning: Empty Query Set
Info: Determined ID: gi|5578918 needs Merging.
Info: Blast Warning: Empty Query Set
Info: Determined ID: gi|5578918 needs Merging.
Info: Best Rank: 4 in  for 5578918 of 1
Info:  NG returned 1 alignments

Mini-ctg pairs, see CG-1612
278353CreateSwitchPt08/02/2013 18:06:31chenhc
tpf_m_BuilderId: t Toolkit wrapper version: built Aug  2 2013 using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib
278354CreateSwitchPt08/02/2013 18:06:31chenhc
tpf_m_BuilderId: t Toolkit wrapper version: built Aug  2 2013 using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib



down arrow BAC Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
CH17-109O03AL096792.599.87%pos 72702 (R+)  
CH17-292A17AL096792.599.07%pos 62823 (R-)  
CH17-334J19AL096792.599.85%pos 98915 (R-)  
CH17-383J18AL096792.599.38%pos 93361 (R+)  
CH17-7K18AL096792.597.53%pos 62823 (R-)  
CTD-2071D2 AL096792.597.35%pos 41282 (F+)
CTD-2238H17AL096792.598.6%pos 30966 (R+)  
CTD-2309F22AL096792.5100%pos 63060 (R-)  
CTD-2555J8 AL096792.599.56%pos 62846 (F+)
CTD-2636O14 AL096792.599.33%pos 16214 (F+)
CTD-3025E21 AL096792.599.74%pos 5194 (F+)
CTD-3082O9 AL096792.599.34%pos 80040 (F+)
RP11-1057H5 AL096792.598.76%pos 46686 (F+)
RP11-876N22 AL096792.597.74%pos 98446 (F-)
RP11-914D5 AL096792.597.46%pos 88301 (F-)
RP11-943F8 AL096792.598.68%pos 88301 (F-)
RP11-977B19AL096792.597.63%pos 80006 (R-)  
RP11-98M1AL096792.599.72%pos 62831 (R-)  

down arrow Fosmid Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
ABC10-44118300J17 AL096792.599.53%pos 94407 (F+)
ABC10-44374100F18AL096792.599.66%pos 78426 (R-)  
ABC10-44374100H16AL096792.599.66%pos 78424 (R-)  
ABC10-44491000C6 AL096792.599.83%pos 20608 (F-)
ABC10-44494100E19AL096792.599.09%pos 12862 (R+) AL096792.598.29%pos 55571 (F-)
ABC10-44530500J9AL096792.5100%pos 7440 (R-)  
ABC10-44562600B19AL096792.599.61%pos 78417 (R-)  
ABC10-44588100G1 AL096792.5100%pos 31560 (F+)
ABC10-44632200N9AL096792.599.85%pos 94867 (R+)  
ABC10-44751300J8 AL096792.599.48%pos 5634 (F-)
ABC10-45475500M5 AL096792.599.82%pos 20608 (F-)
ABC10-45498900B16AL096792.599.04%pos 51436 (R+) AL096792.599.45%pos 93636 (F-)
ABC10-45499300G1AL096792.5100%pos 89175 (R-) AL096792.598.73%pos 47906 (F+)
ABC10-45505900B13 AL096792.5100%pos 24987 (F-)
ABC10-45549000C17AL096792.599.74%pos 51434 (R+) AL096792.599.17%pos 93675 (F-)
ABC10-46303900M20 AL096792.598.98%pos 37148 (F-)
ABC10-46310200E14 AL096792.599.22%pos 11962 (F-)
ABC10-46315300K2AL096792.597.52%pos 44595 (R-)  
ABC10-46677600C5 AL096792.599.7%pos 83808 (F-)
ABC10-722168B13AL096792.599.56%pos 9628 (R+)  
ABC11-47240000I13AL096792.599.59%pos 24482 (R-)  
ABC11-47243000E16AL096792.599.33%pos 42502 (R-) AL096792.599.5%pos 1592 (F+)
ABC11-47247200J19 AL096792.598.56%pos 63964 (F+)
ABC11-47251500I13AL096792.599.82%pos 24436 (R-)  
ABC11-47352600N9AL096792.5100%pos 20611 (R+) AL096792.598.64%pos 62958 (F-)
ABC11-48008600K21AL096792.598.22%pos 39031 (R-)  
ABC11-48290300M21 AL096792.599.73%pos 17355 (F-)
ABC11-48425400D7 AL096792.599.7%pos 63948 (F+)
ABC11-48431700M1AL096792.599.75%pos 23458 (R-)  
ABC11-49597600N16AL096792.599.39%pos 61070 (R+)  
ABC11-49599900E11AL096792.599.85%pos 13517 (R+) AL096792.599.86%pos 53725 (F-)
ABC11-49654700L1 AL096792.599.87%pos 16748 (F+)
ABC12-46337200C12AL096792.599.33%pos 56035 (R+)  
ABC12-46357000H7 AL096792.5100%pos 914 (F+)
ABC12-46666900M18AL096792.599.58%pos 22586 (R-)  
ABC12-46667600N15 AL096792.599.38%pos 44824 (F-)
ABC12-46817600K21AL096792.599.69%pos 101215 (R-)  
ABC12-46968100G21 AL096792.5100%pos 2683 (F-)
ABC12-47021500K24AL096792.599.78%pos 90521 (R+)  
ABC12-47033500P6AL096792.599.74%pos 20436 (R+)  
ABC12-47951700A10AL096792.597.53%pos 92276 (R+)  
ABC12-47954700F9 AL096792.599.84%pos 13632 (F+)
ABC12-49040500E14 AL096792.599.19%pos 24195 (F+)
ABC12-49071500N23 AL096792.598.43%pos 11404 (F+)
ABC12-49116400K24AL096792.5100%pos 7170 (R+) AL096792.599.11%pos 47511 (F-)
ABC12-49215300M19 AL096792.599.21%pos 13622 (F+)
ABC12-49217800P13AL096792.599.65%pos 8209 (R+)  
ABC12-49234600E19 AL096792.599.2%pos 92281 (F+)
ABC12-49284800H14AL096792.599.84%pos 22588 (R-)  
ABC12-7918249K8AL096792.598.56%pos 26055 (R+) AL096792.599.61%pos 66445 (F-)
ABC13-1045122I23AL096792.599.58%pos 73310 (R+)  
ABC13-1045322O1AL096792.599.55%pos 13518 (R-)  
ABC13-47476000D4AL096792.599.86%pos 76170 (R-) AL096792.599.26%pos 38424 (F+)
ABC13-47482000L1AL096792.599.75%pos 56638 (R-)  
ABC13-47601200I2AL096792.599.74%pos 56879 (R+) AL096792.599.74%pos 93875 (F-)
ABC13-48061700L18 AL096792.599.13%pos 85544 (F+)
ABC13-48565700P12AL096792.599.33%pos 7037 (R+)  
ABC13-48727800I3AL096792.599.59%pos 98914 (R+)  
ABC13-48743700G8AL096792.599.34%pos 91706 (R-)  
ABC13-48831000B6AL096792.599.34%pos 23496 (R-)  
ABC13-48831000D4AL096792.598.99%pos 23496 (R-)  
ABC13-48870400B10AL096792.599.86%pos 31605 (R-)  
ABC13-48903600C23AL096792.5100%pos 20127 (R-)  
ABC13-49703100P15 AL096792.599.19%pos 63392 (F+)
ABC13-49722000K16 AL096792.599.87%pos 63396 (F+)
ABC13-49740100E15 AL096792.599.25%pos 60706 (F-)
ABC13-49757600D2 AL096792.5100%pos 63410 (F+)
ABC13-49765600P18AL096792.599.84%pos 88693 (R+)  
ABC13-926122O1AL096792.599.86%pos 14170 (R+) AL096792.599.25%pos 53798 (F-)
ABC13-939622L8AL096792.599.33%pos 14164 (R+) AL096792.5100%pos 53741 (F-)
ABC14-1035614K7AL096792.599.86%pos 51288 (R+)  
ABC14-1064614H8AL096792.599.54%pos 92697 (R+)  
ABC14-50076200A22AL096792.599.57%pos 26775 (R-)  
ABC14-50105100K22 AL096792.599.87%pos 11180 (F-)
ABC14-50128300K11 AL096792.599.86%pos 99585 (F-)
ABC14-50132100G12AL096792.599.71%pos 18775 (R-)  
ABC14-50138500F21AL096792.5100%pos 51307 (R+)  
ABC14-50139300F16AL096792.5100%pos 15978 (R-)  
ABC14-50142900G18 AL096792.599.86%pos 16245 (F-)
ABC14-50159500H14 AL096792.599.84%pos 11179 (F-)
ABC14-50161900G1AL096792.598.87%pos 44116 (R-) AL096792.599.43%pos 5389 (F+)
ABC14-50162200F4AL096792.599.57%pos 44126 (R-) AL096792.5100%pos 5352 (F+)
ABC14-50177800E23 AL096792.599.46%pos 43310 (F-)
ABC14-50180300L7 AL096792.599.84%pos 1181 (F-)
ABC14-50194300O9 AL096792.599.85%pos 4250 (F+)
ABC14-50200700K2 AL096792.5100%pos 4214 (F+)
ABC14-50405500F14AL096792.599.85%pos 28396 (R+) AL096792.5100%pos 66369 (F-)
ABC14-50405600G2 AL096792.5100%pos 22638 (F-)
ABC14-50408700G1 AL096792.599.87%pos 62467 (F+)
ABC14-50471400P22AL096792.5100%pos 19181 (R-)  
ABC14-50925500H12 AL096792.599.86%pos 70818 (F+)
ABC14-50933200H7AL096792.5100%pos 92882 (R+)  
ABC14-50997400C12AL096792.5100%pos 48187 (R+) AL096792.599.51%pos 85648 (F-)
ABC14-50997700L4 AL096792.5100%pos 17293 (F-)
ABC14-51727500B24AL096792.599.86%pos 19177 (R-)  
ABC14-945914M11 AL096792.599.67%pos 29253 (F-)
ABC14-972514E23AL096792.5100%pos 48187 (R+)  
ABC14-983214O11AL096792.599.65%pos 18766 (R-)  
ABC14-986314J2AL096792.599.69%pos 1177 (R+) AL096792.599.27%pos 41990 (F-)
ABC7-40255200A7AL096792.599.68%pos 20917 (R+) AL096792.599.32%pos 60098 (F-)
ABC7-40267500N10AL096792.599.74%pos 67687 (R-) AL096792.599.52%pos 30010 (F+)
ABC7-40623100C21AL096792.599.74%pos 47468 (R+) AL096792.599.29%pos 89635 (F-)
ABC7-40629800H22AL096792.599.84%pos 7922 (R+) AL096792.5100%pos 52176 (F-)
ABC7-40637600O3AL096792.599.12%pos 85851 (R+)  
ABC7-42360000H15 AL096792.599.62%pos 4638 (F-)
ABC7-42367700I19AL096792.5100%pos 17048 (R+) AL096792.599.85%pos 52119 (F-)
ABC7-42379000G10AL096792.598.1%pos 83572 (R-) AL096792.599.05%pos 43441 (F+)
ABC7-42416800G15AL096792.599.18%pos 83403 (R+)  
ABC7-42421200P17AL096792.599.75%pos 12823 (R+) AL096792.599.73%pos 52891 (F-)
ABC7-42446700I4AL096792.599.45%pos 93092 (R-) AL096792.599.75%pos 58312 (F+)
ABC7-42447700A10 AL096792.598.86%pos 35633 (F-)
ABC7-42450800P4 AL096792.599.27%pos 85948 (F+)
ABC7-42452500C24 AL096792.599.04%pos 33026 (F-)
ABC7-42454800E23 AL096792.599.54%pos 18549 (F-)
ABC7-42458700K16AL096792.599.85%pos 18922 (R+) AL096792.599.87%pos 60495 (F-)
ABC7-42479000M22AL096792.5100%pos 28635 (R-)  
ABC7-42484800G20AL096792.5100%pos 4426 (R+) AL096792.599.75%pos 46163 (F-)
ABC7-42493900D23 AL096792.599.8%pos 11149 (F-)
ABC7-42508300K10 AL096792.599.71%pos 11121 (F-)
ABC7-42749200J22AL096792.599.85%pos 77975 (R-) AL096792.599.39%pos 44482 (F+)
ABC7-42756400O10 AL096792.599.67%pos 24970 (F-)
ABC7-475522I1AL096792.599.85%pos 73930 (R+)  
ABC7-480022C19 AL096792.599.4%pos 87702 (F+)
ABC7-491822B14AL096792.599.19%pos 39885 (R+) AL096792.5100%pos 73629 (F-)
ABC7-497622A13 AL096792.599.86%pos 5603 (F-)
ABC7-616022D7AL096792.599.86%pos 74124 (R-) AL096792.5100%pos 40818 (F+)
ABC8-2112640A23AL096792.599.34%pos 50995 (R-) AL096792.597.89%pos 12441 (F+)
ABC8-2124440D7 AL096792.5100%pos 89903 (F+)
ABC8-2137940O8AL096792.599.73%pos 47849 (R+) AL096792.5100%pos 88052 (F-)
ABC8-2620240P16AL096792.599.46%pos 78047 (R-)  
ABC8-40859500A3AL096792.599.86%pos 27732 (R+) AL096792.599.26%pos 68298 (F-)
ABC8-40863900C16 AL096792.599.25%pos 26124 (F-)
ABC8-40871000J15AL096792.599.21%pos 54511 (R-) AL096792.5100%pos 16066 (F+)
ABC8-40882500M14 AL096792.599%pos 69796 (F+)
ABC8-40958700K5 AL096792.5100%pos 69795 (F+)
ABC8-40966900F20AL096792.599.87%pos 66132 (R-) AL096792.599.7%pos 21019 (F+)
ABC8-40967400H20AL096792.599.43%pos 44336 (R+) AL096792.599.85%pos 78517 (F-)
ABC8-40981400P6AL096792.599.6%pos 7206 (R+) AL096792.5100%pos 40007 (F-)
ABC8-41080200G10 AL096792.598.89%pos 18456 (F-)
ABC8-41080400G24 AL096792.599.49%pos 91403 (F-)
ABC8-41128000O12AL096792.599.86%pos 86194 (R+)  
ABC8-41148100O4AL096792.5100%pos 40887 (R-) AL096792.599.53%pos 7017 (F+)
ABC8-41151700B20AL096792.599.86%pos 88540 (R-) AL096792.5100%pos 54540 (F+)
ABC8-41156300N19AL096792.5100%pos 41876 (R+)  
ABC8-41163600M15 AL096792.599.57%pos 74078 (F-)
ABC8-41169700G16AL096792.599.6%pos 91826 (R-)  
ABC8-41173000H16AL096792.599.26%pos 91829 (R-) AL096792.599.61%pos 57182 (F+)
ABC8-41176800F12AL096792.599.84%pos 66685 (R+)  
ABC8-41177800D12 AL096792.599.86%pos 10178 (F-)
ABC8-41189900N17AL096792.599.46%pos 45495 (R-) AL096792.599.58%pos 10370 (F+)
ABC8-41198000H17 AL096792.599.65%pos 30089 (F-)
ABC8-41205600I23AL096792.597.03%pos 7181 (R+) AL096792.599.86%pos 42908 (F-)
ABC8-41223900N18AL096792.599.86%pos 10709 (R+) AL096792.599.86%pos 47895 (F-)
ABC8-41223900P20AL096792.5100%pos 10710 (R+) AL096792.599.86%pos 47918 (F-)
ABC8-41789100K8 AL096792.598.97%pos 57447 (F-)
ABC8-42077200J2AL096792.599.86%pos 7124 (R+) AL096792.598.51%pos 38973 (F-)
ABC8-42077200L19 AL096792.599.6%pos 11983 (F-)
ABC8-42110500D6AL096792.5100%pos 89416 (R+)  
ABC8-42531700D17AL096792.5100%pos 79832 (R-)  
ABC8-42726100C1AL096792.599.33%pos 65669 (R+) AL096792.599.35%pos 101033 (F-)
ABC8-43003700D9 AL096792.599.84%pos 6094 (F+)
ABC8-43027600B10 AL096792.599.79%pos 45986 (F-)
ABC8-43215300M9AL096792.5100%pos 21399 (R+) AL096792.599.43%pos 54729 (F-)
ABC8-43255000C16 AL096792.598.09%pos 26325 (F-)
ABC8-43257600N21 AL096792.599.71%pos 91971 (F-)
ABC8-43258800J17 AL096792.5100%pos 8998 (F+)
ABC8-43771400E21AL096792.598.67%pos 23145 (R+) AL096792.599.07%pos 60345 (F-)
ABC8-5691649F19 AL096792.598.29%pos 5770 (F+)
ABC8-683222H20AL096792.599.87%pos 17211 (R+) AL096792.598.16%pos 50552 (F-)
ABC8-704722M1AL096792.599.86%pos 59848 (R-) AL096792.598.92%pos 25981 (F+)
ABC8-718140O19 AL096792.599.47%pos 5138 (F-)
ABC8-723840H18AL096792.599.43%pos 91805 (R-)  
ABC8-773922K6AL096792.598.46%pos 59770 (R-) AL096792.599.36%pos 25988 (F+)
ABC8-786722E11 AL096792.598.99%pos 19174 (F-)
ABC9-41267100I13 AL096792.599.15%pos 33241 (F-)
ABC9-41267600M6AL096792.599.65%pos 10720 (R-)  
ABC9-41271400K4AL096792.599.57%pos 4898 (R+)  
ABC9-41282100E20 AL096792.5100%pos 2949 (F-)
ABC9-41287000G12 AL096792.5100%pos 18619 (F-)
ABC9-43324000C19AL096792.599.84%pos 99235 (R+)  
ABC9-43850800P12AL096792.599.71%pos 63718 (R-)  
ABC9-43912700K14AL096792.599.55%pos 7236 (R+)  
ABC9-43929600E14AL096792.598.72%pos 55252 (R-) AL096792.5100%pos 11769 (F+)
ABC9-43930600D10AL096792.599.86%pos 99236 (R+)  
ABC9-43935800O16AL096792.598.57%pos 20613 (R-)  
ABC9-43943900P11AL096792.599.64%pos 20629 (R-)  
ABC9-43985000C9AL096792.598.75%pos 59404 (R-) AL096792.599.73%pos 23546 (F+)
ABC9-43988700P10AL096792.599.35%pos 16810 (R-)  
ABC9-44020200P14 AL096792.599.29%pos 74667 (F+)
ABC9-44043300L10AL096792.599.67%pos 7507 (R-)  
ABC9-44049900B6 AL096792.598.98%pos 11762 (F+)
ABC9-45236400F2 AL096792.599.19%pos 18605 (F-)
ABC9-45366100C16AL096792.599.86%pos 72722 (R+)  
ABC9-45366100M23 AL096792.599.25%pos 23542 (F+)
ABC9-45392300J21 AL096792.599.85%pos 62507 (F+)
ABC9-45464700J16AL096792.599.21%pos 53770 (R+) AL096792.599.84%pos 94585 (F-)
ABC9-45486900A17AL096792.599.86%pos 98757 (R-)  
ABC9-45919900E6AL096792.598.87%pos 41642 (R-)  
ABC9-46182200O4 AL096792.599.84%pos 8459 (F+)
WI2-0423C03 AL096792.5100%pos 34598 (F-)
WI2-0531N11 AL096792.5100%pos 86307 (F+)
WI2-0936L07 AL096792.599.22%pos 26025 (F-)
WI2-1007A16 AL096792.599.11%pos 18454 (F-)
WI2-1305D19AL096792.5100%pos 70805 (R-)  
WI2-1305J11AL096792.598.76%pos 70849 (R-) AL096792.598.2%pos 33117 (F+)
WI2-1361D13 AL096792.5100%pos 4694 (F+)
WI2-1361P21 AL096792.5100%pos 4695 (F+)
WI2-1687K13AL096792.5100%pos 97112 (R+)  
WI2-1804E20AL096792.599.68%pos 10571 (R-)  
WI2-2190P13AL096792.5100%pos 97033 (R+)  
WI2-2233O04AL096792.598.64%pos 36945 (R-)  
WI2-2845F19AL096792.599.49%pos 1240 (R+)  
WI2-2870F15AL096792.5100%pos 8774 (R-)  
WI2-2994C04AL096792.599.38%pos 29188 (R-)  
WI2-3308H21AL096792.599.36%pos 44829 (R-) AL096792.599.51%pos 10356 (F+)
WI2-3615N24AL096792.5100%pos 87369 (R-)  
WI2-3644G14 AL096792.599.82%pos 29467 (F-)

down arrow Repeats
acc start stop repeat id strand name family class
AL096792.5 16010 16157 9756033 + MER5A hAT-Charlie DNA
AL096792.5 17333 17384 9756034 - MIR MIR SINE
AL096792.5 17773 18050 9756035 - AluSx Alu SINE
AL096792.5 18464 18935 9756036 + Charlie4a hAT-Charlie DNA
AL096792.5 19780 19968 9756037 - Charlie8 hAT-Charlie DNA
AL096792.5 20109 20330 9756038 - LTR48B ERV1 LTR
AL096792.5 20316 20512 9756038 - LTR48B ERV1 LTR
AL096792.5 20581 20612 9756039 + (TC)n
AL096792.5 21271 21444 9756040 + LTR33 ERVL LTR
AL096792.5 21490 21659 9756040 + LTR33 ERVL LTR
AL096792.5 22384 22472 9756041 - MLT1I ERVL-MaLR LTR
AL096792.5 22851 22991 9756042 - L3b CR1
AL096792.5 23167 23288 9756042 - L3b CR1
AL096792.5 24118 24405 9756043 - AluJb Alu SINE
AL096792.5 24549 24635 9756044 + MIR MIR SINE
AL096792.5 24723 24959 9756045 - Charlie4a hAT-Charlie DNA
AL096792.5 24962 27002 9756046 - L1PA17 L1
AL096792.5 27003 27310 9756047 - AluJb Alu SINE
AL096792.5 27311 27598 9756046 - L1PA17 L1
AL096792.5 27608 27842 9756045 - Charlie4a hAT-Charlie DNA
AL096792.5 27900 28002 9756048 - MIRb MIR SINE
AL096792.5 28227 28282 9756049 - MER5A hAT-Charlie DNA
AL096792.5 28303 28727 9756050 - MLT1D ERVL-MaLR LTR
AL096792.5 28734 28773 9756051 - THE1D ERVL-MaLR LTR
AL096792.5 28774 29103 9756052 + AluSx Alu SINE
AL096792.5 29104 29448 9756051 - THE1D ERVL-MaLR LTR
AL096792.5 29466 29523 9756049 - MER5A hAT-Charlie DNA
AL096792.5 29528 29655 9756053 + MIRb MIR SINE
AL096792.5 30298 30608 9756054 + AluY Alu SINE
AL096792.5 31164 31191 9756055 + AT_rich Low_complexity
AL096792.5 31195 31245 9756056 + MIRb MIR SINE
AL096792.5 31278 31388 9756057 + L2a L2
AL096792.5 32169 32564 9756058 - LTR39 ERV1 LTR
AL096792.5 15537 15943 9756032 + LTR54 ERV1 LTR
AL096792.5 15228 15524 9756031 + L1ME3A L1
AL096792.5 13981 14254 9756030 + AluSx Alu SINE
AL096792.5 13561 13834 9756029 + L2a L2
AL096792.5 13368 13556 9756028 + MIRb MIR SINE
AL096792.5 13055 13364 9756027 + AluY Alu SINE
AL096792.5 12487 12790 9756026 - AluY Alu SINE
AL096792.5 11543 11998 9756024 - L1PA17 L1
AL096792.5 11137 11542 9756025 + MSTA ERVL-MaLR LTR
AL096792.5 11031 11136 9756024 - L1PA17 L1
AL096792.5 10426 10529 9756023 + L1ME3G L1
AL096792.5 9793 10056 9756022 + MER121 TcMar? DNA
AL096792.5 9611 9654 9756021 + AT_rich Low_complexity
AL096792.5 8660 8795 9756020 - L1MA7 L1
AL096792.5 7970 8380 9756019 + L2b L2
AL096792.5 7324 7433 9756018 + L2 L2 LINE
AL096792.5 6813 7116 9756017 - L2 L2 LINE
AL096792.5 6536 6698 9756016 + MER58A hAT-Charlie DNA
AL096792.5 5010 5154 9756015 - LTR16A1 ERVL LTR
AL096792.5 4756 4993 9756015 - LTR16A1 ERVL LTR
AL096792.5 4496 4530 9756014 + (TG)n
AL096792.5 2130 2304 9756013 - L1MB4 L1
AL096792.5 1283 1893 9756012 + L1MB4 L1
AL096792.5 787 1251 9756012 + L1MB4 L1
AL096792.5 32691 32722 9756059 + AT_rich Low_complexity
AL096792.5 32869 33596 9756060 - LTR8B ERV1 LTR
AL096792.5 33597 33971 9756058 - LTR39 ERV1 LTR
AL096792.5 34384 34733 9756061 + THE1B ERVL-MaLR LTR
AL096792.5 36233 36303 9756062 - MIR MIR SINE
AL096792.5 36643 36892 9756063 - MIRc MIR SINE
AL096792.5 37542 37719 9756064 - L1P4 L1
AL096792.5 37725 37968 9756065 - Charlie4a hAT-Charlie DNA
AL096792.5 38026 38094 9756066 - MIRc MIR SINE
AL096792.5 38163 38192 9756067 + AT_rich Low_complexity
AL096792.5 38312 38475 9756068 + MER5A1 hAT-Charlie DNA
AL096792.5 38902 39213 9756069 - AluSx Alu SINE
AL096792.5 39791 40085 9756070 + AluSx Alu SINE
AL096792.5 40326 40487 9756071 - MER5A1 hAT-Charlie DNA
AL096792.5 40503 40581 9756072 + MER5A hAT-Charlie DNA
AL096792.5 40842 40874 9756073 + (GA)n Simple_repeat
AL096792.5 41022 41122 9756074 + (TA)n Simple_repeat
AL096792.5 42165 42268 9756075 + MLT1G3 ERVL-MaLR LTR
AL096792.5 42299 42651 9756075 + MLT1G3 ERVL-MaLR LTR
AL096792.5 44178 44357 9756076 + MER5A hAT-Charlie DNA
AL096792.5 44519 44650 9756077 - LTR81A Gypsy LTR
AL096792.5 45281 45626 9756078 - THE1C ERVL-MaLR LTR
AL096792.5 45900 45978 9756079 + AT_rich Low_complexity
AL096792.5 46122 46365 9756080 - LTR16C ERVL LTR
AL096792.5 46704 46752 9756081 + AT_rich Low_complexity
AL096792.5 46854 47181 9756082 + L1ME3Cz L1
AL096792.5 47287 47595 9756083 + MLT1I ERVL-MaLR LTR
AL096792.5 47818 47885 9756084 + Charlie19a hAT-Charlie DNA
AL096792.5 47897 47969 9756085 + MIRb MIR SINE
AL096792.5 48080 50115 9756086 + L1MA2 L1
AL096792.5 50116 50406 9756087 + AluY Alu SINE
AL096792.5 50407 54999 9756086 + L1MA2 L1
AL096792.5 55000 55420 9756088 + MSTA ERVL-MaLR LTR
AL096792.5 55421 56243 9756086 + L1MA2 L1
AL096792.5 56394 56675 9756089 - AluSx Alu SINE
AL096792.5 56681 57413 9756090 - L1ME3A L1
AL096792.5 58432 58823 9756091 - Tigger13a TcMar-Tigger DNA
AL096792.5 59043 59066 9756092 + (TTTTC)n
AL096792.5 59115 59150 9756093 + (A)n Simple_repeat
AL096792.5 59354 59471 9756094 + MER34A ERV1 LTR
AL096792.5 59872 60016 9756095 + FRAM Alu SINE
AL096792.5 60127 60261 9756096 - LTR49 ERV1 LTR
AL096792.5 60360 60698 9756097 + MamRep1151 LTR?
AL096792.5 60910 61222 9756098 - MLT1K ERVL-MaLR LTR
AL096792.5 61223 61647 9756099 - MSTB1 ERVL-MaLR LTR
AL096792.5 61648 61732 9756098 - MLT1K ERVL-MaLR LTR
AL096792.5 62305 62679 9756100 - MSTD ERVL-MaLR LTR
AL096792.5 62684 64288 9756100 - MSTD-int ERVL-MaLR
AL096792.5 64289 64670 9756100 - MSTD ERVL-MaLR LTR
AL096792.5 65513 65593 9756101 - X7A_LINE CR1 LINE
AL096792.5 66915 66937 9756102 + AT_rich Low_complexity
AL096792.5 67180 67239 9756103 + AT_rich Low_complexity
AL096792.5 67616 67719 9756104 - L1M5 L1
AL096792.5 68020 69175 9756105 - Ricksha_b MULE-MuDR DNA
AL096792.5 69178 69647 9756106 - MER34A1 ERV1 LTR
AL096792.5 69655 71445 9756107 - Tigger1 TcMar-Tigger DNA
AL096792.5 71800 74181 9756108 + L1PB2 L1
AL096792.5 74259 74307 9756109 + (CATA)n Simple_repeat
AL096792.5 74539 74846 9756110 - AluSx Alu SINE
AL096792.5 74860 75170 9756111 - AluY Alu SINE
AL096792.5 75596 75907 9756112 - HAL1ME L1 LINE
AL096792.5 76119 76152 9756113 + (TG)n
AL096792.5 76221 76446 9756114 - MIR MIR SINE
AL096792.5 77154 77202 9756115 + AT_rich Low_complexity
AL096792.5 77284 77715 9756116 - Tigger2a TcMar-Tigger DNA
AL096792.5 78103 78759 9756117 + L1ME3Cz L1
AL096792.5 79619 79890 9756118 - MamRep434 TcMar-Tigger DNA
AL096792.5 80185 80729 9756119 - HAL1 L1 LINE
AL096792.5 80730 80769 9756120 + (CA)n Simple_repeat
AL096792.5 81256 81465 9756121 + L1PB4 L1
AL096792.5 81868 81912 9756122 + (TTTTTG)n
AL096792.5 82109 82405 9756123 + AluSx Alu SINE
AL096792.5 82527 82839 9756124 + AluSx Alu SINE
AL096792.5 84290 84372 9756125 + (TA)n Simple_repeat
AL096792.5 84435 84479 9756125 + (TA)n Simple_repeat
AL096792.5 84480 84769 9756126 + ERVL-B4-int ERVL
AL096792.5 84802 84931 9756127 + (TA)n Simple_repeat
AL096792.5 84914 84997 9756128 + (CATATA)n Simple_repeat
AL096792.5 85023 85150 9756129 + (TATAA)n Simple_repeat
AL096792.5 85168 85307 9756130 - MLT2D ERVL LTR
AL096792.5 85315 87319 9756131 - L1MCb L1
AL096792.5 87335 87621 9756132 + AluJb Alu SINE
AL096792.5 87628 87753 9756133 + (CACAT)n Simple_repeat
AL096792.5 87763 88026 9756134 + MER57F ERV1 LTR
AL096792.5 88111 90126 9756131 - L1MCb L1
AL096792.5 90156 90349 9756135 + L1MD2 L1
AL096792.5 90350 90446 9756136 - L1PB4 L1
AL096792.5 90447 91749 9756135 + L1MD2 L1
AL096792.5 91750 91782 9756137 + (CA)n Simple_repeat
AL096792.5 91783 92171 9756138 + L1MB4 L1
AL096792.5 92172 92200 9756135 + L1MD2 L1
AL096792.5 92777 92900 9756139 - MER5B hAT-Charlie DNA
AL096792.5 93038 93189 9756140 - L3b CR1
AL096792.5 93775 93844 9756141 - L2a L2
AL096792.5 93907 94086 9756142 + MIRb MIR SINE
AL096792.5 94719 94837 9756143 + MIR3 MIR SINE
AL096792.5 95401 95823 9756144 - LTR52 ERVL LTR
AL096792.5 95980 96001 9756145 + AT_rich Low_complexity
AL096792.5 96435 96726 9756146 - AluSx Alu SINE
AL096792.5 97326 97520 9756147 + L1MC5a L1
AL096792.5 97808 98191 9756148 + MamRep1151 LTR?
AL096792.5 98359 98543 9756149 + L2a L2
AL096792.5 98544 98781 9756150 - L1MA9 L1
AL096792.5 98782 98882 9756149 + L2a L2
AL096792.5 99000 99178 9756149 + L2a L2
AL096792.5 99317 99494 9756149 + L2a L2
AL096792.5 99622 99908 9756151 + AluJb Alu SINE
AL096792.5 99927 99959 9756152 + (TAAA)n Simple_repeat
AL096792.5 100124 100326 9756153 - MIRb MIR SINE
AL096792.5 100407 100693 9756154 - MER33 hAT-Charlie DNA
AL096792.5 101206 101342 9756155 + L1MC4a L1
AL096792.5 13741 13787 102052744 N DUST
AL096792.5 14245 14254 102052745 N DUST
AL096792.5 16567 16581 102052746 N DUST
AL096792.5 17773 17792 102052747 N DUST
AL096792.5 18524 18531 102052748 N DUST
AL096792.5 18713 18777 102052749 N DUST
AL096792.5 19425 19446 102052750 N DUST
AL096792.5 20346 20353 102052751 N DUST
AL096792.5 20581 20612 102052752 N DUST
AL096792.5 21738 21744 102052753 N DUST
AL096792.5 22489 22495 102052754 N DUST
AL096792.5 22708 22714 102052755 N DUST
AL096792.5 24828 24895 102052756 N DUST
AL096792.5 24953 24985 102052757 N DUST
AL096792.5 25811 25824 102052758 N DUST
AL096792.5 26331 26337 102052759 N DUST
AL096792.5 26483 26490 102052760 N DUST
AL096792.5 26716 26722 102052761 N DUST
AL096792.5 26948 27032 102052762 N DUST
AL096792.5 27108 27114 102052763 N DUST
AL096792.5 27853 27860 102052764 N DUST
AL096792.5 27908 27916 102052765 N DUST
AL096792.5 28138 28145 102052766 N DUST
AL096792.5 29087 29103 102052767 N DUST
AL096792.5 29875 29890 102052768 N DUST
AL096792.5 30579 30608 102052769 N DUST
AL096792.5 30893 30900 102052770 N DUST
AL096792.5 31075 31089 102052771 N DUST
AL096792.5 31135 31141 102052772 N DUST
AL096792.5 31184 31191 102052773 N DUST
AL096792.5 32510 32518 102052774 N DUST
AL096792.5 32601 32607 102052775 N DUST
AL096792.5 32679 32722 102052776 N DUST
AL096792.5 13335 13371 102052743 N DUST
AL096792.5 13180 13186 102052742 N DUST
AL096792.5 12487 12511 102052741 N DUST
AL096792.5 11743 11752 102052740 N DUST
AL096792.5 11026 11036 102052739 N DUST
AL096792.5 10925 10931 102052738 N DUST
AL096792.5 10066 10077 102052737 N DUST
AL096792.5 9611 9619 102052736 N DUST
AL096792.5 9153 9161 102052735 N DUST
AL096792.5 8897 8903 102052734 N DUST
AL096792.5 8779 8785 102052733 N DUST
AL096792.5 8645 8733 102052732 N DUST
AL096792.5 4496 4527 102052731 N DUST
AL096792.5 4422 4433 102052730 N DUST
AL096792.5 4254 4261 102052729 N DUST
AL096792.5 3936 3942 102052728 N DUST
AL096792.5 3414 3421 102052727 N DUST
AL096792.5 3394 3401 102052726 N DUST
AL096792.5 3003 3009 102052725 N DUST
AL096792.5 1766 1772 102052724 N DUST
AL096792.5 1256 1272 102052723 N DUST
AL096792.5 1160 1234 102052722 N DUST
AL096792.5 998 1005 102052721 N DUST
AL096792.5 47 53 102052720 N DUST
AL096792.5 34675 34681 102052777 N DUST
AL096792.5 34821 34827 102052778 N DUST
AL096792.5 36022 36028 102052779 N DUST
AL096792.5 36321 36327 102052780 N DUST
AL096792.5 37361 37367 102052781 N DUST
AL096792.5 37919 37925 102052782 N DUST
AL096792.5 38146 38220 102052783 N DUST
AL096792.5 38776 38783 102052784 N DUST
AL096792.5 38885 38931 102052785 N DUST
AL096792.5 39644 39662 102052786 N DUST
AL096792.5 40071 40085 102052787 N DUST
AL096792.5 40842 40874 102052788 N DUST
AL096792.5 41022 41158 102052789 N DUST
AL096792.5 41261 41267 102052790 N DUST
AL096792.5 41930 41938 102052791 N DUST
AL096792.5 44624 44655 102052792 N DUST
AL096792.5 44728 44740 102052793 N DUST
AL096792.5 45208 45214 102052794 N DUST
AL096792.5 45220 45281 102052795 N DUST
AL096792.5 45900 45973 102052796 N DUST
AL096792.5 46010 46016 102052797 N DUST
AL096792.5 46382 46395 102052798 N DUST
AL096792.5 46704 46769 102052799 N DUST
AL096792.5 48244 48250 102052800 N DUST
AL096792.5 50393 50406 102052801 N DUST
AL096792.5 50528 50535 102052802 N DUST
AL096792.5 50760 50767 102052803 N DUST
AL096792.5 51283 51290 102052804 N DUST
AL096792.5 51611 51622 102052805 N DUST
AL096792.5 51665 51718 102052806 N DUST
AL096792.5 52708 52763 102052807 N DUST
AL096792.5 52768 52777 102052808 N DUST
AL096792.5 53117 53177 102052809 N DUST
AL096792.5 53520 53526 102052810 N DUST
AL096792.5 54042 54048 102052811 N DUST
AL096792.5 54822 54828 102052812 N DUST
AL096792.5 55535 55541 102052813 N DUST
AL096792.5 55545 55552 102052814 N DUST
AL096792.5 55995 56003 102052815 N DUST
AL096792.5 56233 56276 102052816 N DUST
AL096792.5 56394 56400 102052817 N DUST
AL096792.5 56680 56688 102052818 N DUST
AL096792.5 57317 57343 102052819 N DUST
AL096792.5 57983 57989 102052820 N DUST
AL096792.5 59031 59068 102052821 N DUST
AL096792.5 59115 59150 102052822 N DUST
AL096792.5 59578 59587 102052823 N DUST
AL096792.5 61654 61660 102052824 N DUST
AL096792.5 61922 61928 102052825 N DUST
AL096792.5 62235 62242 102052826 N DUST
AL096792.5 62250 62257 102052827 N DUST
AL096792.5 63745 63751 102052828 N DUST
AL096792.5 64825 64907 102052829 N DUST
AL096792.5 65170 65180 102052830 N DUST
AL096792.5 65944 65951 102052831 N DUST
AL096792.5 66033 66113 102052832 N DUST
AL096792.5 66346 66352 102052833 N DUST
AL096792.5 66597 66605 102052834 N DUST
AL096792.5 66857 66869 102052835 N DUST
AL096792.5 67176 67239 102052836 N DUST
AL096792.5 68104 68165 102052837 N DUST
AL096792.5 70698 70704 102052838 N DUST
AL096792.5 71327 71336 102052839 N DUST
AL096792.5 71976 71982 102052840 N DUST
AL096792.5 72124 72130 102052841 N DUST
AL096792.5 73455 73520 102052842 N DUST
AL096792.5 73706 73712 102052843 N DUST
AL096792.5 74259 74307 102052844 N DUST
AL096792.5 74550 74564 102052845 N DUST
AL096792.5 74714 74720 102052846 N DUST
AL096792.5 74850 74888 102052847 N DUST
AL096792.5 75542 75553 102052848 N DUST
AL096792.5 75845 75892 102052849 N DUST
AL096792.5 76119 76149 102052850 N DUST
AL096792.5 77140 77202 102052851 N DUST
AL096792.5 78002 78008 102052852 N DUST
AL096792.5 78040 78056 102052853 N DUST
AL096792.5 79579 79586 102052854 N DUST
AL096792.5 80283 80293 102052855 N DUST
AL096792.5 80592 80667 102052856 N DUST
AL096792.5 80714 80726 102052857 N DUST
AL096792.5 80730 80769 102052858 N DUST
AL096792.5 81457 81515 102052859 N DUST
AL096792.5 81647 81659 102052860 N DUST
AL096792.5 81713 81780 102052861 N DUST
AL096792.5 81866 81915 102052862 N DUST
AL096792.5 82057 82106 102052863 N DUST
AL096792.5 82389 82405 102052864 N DUST
AL096792.5 82811 82844 102052865 N DUST
AL096792.5 83721 83733 102052866 N DUST
AL096792.5 84210 84216 102052867 N DUST
AL096792.5 84289 84370 102052868 N DUST
AL096792.5 84434 84474 102052869 N DUST
AL096792.5 84770 85161 102052870 N DUST
AL096792.5 85588 85594 102052871 N DUST
AL096792.5 86073 86151 102052872 N DUST
AL096792.5 86220 86226 102052873 N DUST
AL096792.5 87003 87098 102052874 N DUST
AL096792.5 87461 87467 102052875 N DUST
AL096792.5 87624 87753 102052876 N DUST
AL096792.5 88193 88260 102052877 N DUST
AL096792.5 88403 88478 102052878 N DUST
AL096792.5 88700 88767 102052879 N DUST
AL096792.5 88822 88879 102052880 N DUST
AL096792.5 90074 90080 102052881 N DUST
AL096792.5 90203 90210 102052882 N DUST
AL096792.5 90305 90314 102052883 N DUST
AL096792.5 90320 90368 102052884 N DUST
AL096792.5 90647 90655 102052885 N DUST
AL096792.5 90687 90766 102052886 N DUST
AL096792.5 91520 91564 102052887 N DUST
AL096792.5 91750 91782 102052888 N DUST
AL096792.5 93873 93879 102052889 N DUST
AL096792.5 95126 95132 102052890 N DUST
AL096792.5 95987 95993 102052891 N DUST
AL096792.5 96421 96453 102052892 N DUST
AL096792.5 97619 97625 102052893 N DUST
AL096792.5 99469 99475 102052894 N DUST
AL096792.5 99599 99605 102052895 N DUST
AL096792.5 99900 100039 102052896 N DUST
AL096792.5 100474 100530 102052897 N DUST
AL096792.5 100736 100742 102052898 N DUST