Alignment last updated: 11/11/2008 11:57:43

Join Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

Alignment for AL035662.65 and AL031687.17

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AL035662.65 Human DNA sequence from clone RP4-599F21 on chromosome 20q12-13.12, complete sequence [htgs_phase3]

Length: 95,283 bp

AL031687.17 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1, complete sequence [htgs_phase3]

Length: 147,815 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

Alignment 1
Align ID: 46905
Total Length: 100
Aligned Length: 100
Percent Identity: 100
Number of Gaps: 0
Number of Mismatches: 0
Source: CtgOverlap Seq-Align
Valid Switchpoint: true (L)
Valid Switchpoint: true (A)

Switch Points

Type	Point1	Point2	Orient1	Orient2	Curator	Comment	Time	Id	Alignment	Releases
L	95283	101	+	+	chenhc	Taxid 9606 chrom 20 Primary assembly	2008-08-08 12:39:20.606	23541	46905	GRCh38, GRCh37, Hs36
A	95283	101	+	+	chenhc	Taxid 9606 chrom 20 Primary assembly	2008-11-11 11:57:43.930	48409	46905

Alignment 1 of 1

 AL035662.65 : + : 95184..95283
 AL031687.17 : + : 1..100
 Mismatches = 0, Gaps = 0, Length = 100
 Percent identity = 100%
 Score = 198.7 bits (100), Expect = 2.116e-50
  3 BAC and 87 Fosmid bridging clones.
  3 BAC and 86 Fosmid concordant clones.
  0 BAC and 1 Fosmid discordant clones.

AL035662.65 >95184   gatcctagatgacataatcatccctttaagatttcagaatcctagaacatcagagccaaa 95243  
AL031687.17 >1       ............................................................ 60     

AL035662.65 >95244   gcattcacacagaatatactgtccagctggggcacaggga 95283  
AL031687.17 >61      ........................................ 100

Events

Id	Type	Date	Whodid	Comment
72085	InitHasAlign	09/30/2006 13:17:04	jcherry	blast parameters: -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R' bandwidths: 501 701 1001 5001 Toolkit wrapper version: built Thu Aug 17 17:58:09 EDT 2006 using /netopt/ncbi_tools/c++.by-date/production/20060730 Running blast for AL031687.17 and AL035662.65 Found 1 acceptable dovetail alignment(s) by blast -W 28 -r 1 -q -3 -e 1e-5 -Z 200 -F 'm L; R'
134298	CreateSwitchPt	08/08/2008 12:39:20	chenhc	From Hs build 36.1 agp files
72086	ReSetShortOvlp	09/04/2008 10:31:48	dbo
159166	CreateSwitchPt	11/11/2008 11:57:43	chenhc	contig_builder 1.3 Toolkit wrapper version: built Nov 10 2008 using /netopt/ncbi_tools64/c++.by-date/20081110/GCC401-Release64/lib

BAC Ends

Too endhits, not showing endhit table.

Fosmid Ends

Too endhits, not showing endhit table.

Repeats

acc	start	stop	repeat id	strand	name	family	class
AL035662.65	19791	20041	9868241	-	MIR	MIR	SINE
AL035662.65	20661	20767	9868242	-	L2c		L2
AL035662.65	20774	21051	9868243	-	AluJb	Alu	SINE
AL035662.65	21053	21116	9868242	-	L2c		L2
AL035662.65	21242	21394	9868242	-	L2c		L2
AL035662.65	21729	21902	9868244	-	AluJb	Alu	SINE
AL035662.65	22567	22702	9868245	-	MER103C	hAT-Charlie	DNA
AL035662.65	22734	22831	9868246	+	MIRb	MIR	SINE
AL035662.65	23201	23496	9868247	+	AluSx	Alu	SINE
AL035662.65	23684	23728	9868248	+	(CATATA)n		Simple_repeat
AL035662.65	24553	24829	9868249	+	MER113A	hAT-Charlie	DNA
AL035662.65	26548	26751	9868250	-	L2b		L2
AL035662.65	27071	27216	9868251	-	L2b		L2
AL035662.65	27313	27393	9868252	-	MIRb	MIR	SINE
AL035662.65	27394	28964	9868253	+	LTR12C	ERV1	LTR
AL035662.65	28965	29116	9868252	-	MIRb	MIR	SINE
AL035662.65	29738	29757	9868254	+	(T)n
AL035662.65	29917	30135	9868255	-	AluJb	Alu	SINE
AL035662.65	30188	30478	9868256	-	AluSx	Alu	SINE
AL035662.65	30609	30810	9868257	+	L1ME3		L1
AL035662.65	30838	30903	9868258	+	MIRc	MIR	SINE
AL035662.65	30906	31012	9868259	-	L2b		L2
AL035662.65	31017	31118	9868258	+	MIRb	MIR	SINE
AL035662.65	31154	31297	9868260	-	MIRc	MIR	SINE
AL035662.65	31451	31744	9868261	+	AluJb	Alu	SINE
AL035662.65	31751	31866	9868262	-	MER53	hAT	DNA
AL035662.65	31868	31976	9868263	-	HAL1b	L1	LINE
AL035662.65	31982	32286	9868264	-	AluJb	Alu	SINE
AL035662.65	32377	32427	9868265	-	MIRc	MIR	SINE
AL035662.65	32394	32439	9868266	-	MIRb	MIR	SINE
AL035662.65	32466	32575	9868267	-	L1ME3Cz		L1
AL035662.65	32576	32884	9868268	+	AluSx	Alu	SINE
AL035662.65	32885	32968	9868267	-	L1ME3Cz		L1
AL035662.65	18850	19281	9868240	+	LTR54	ERV1	LTR
AL035662.65	16230	16259	9868239	+	AT_rich		Low_complexity
AL035662.65	15740	15766	9868238	+	AT_rich		Low_complexity
AL035662.65	13030	13058	9868237	+	AT_rich		Low_complexity
AL035662.65	12648	12933	9868236	-	AluJb	Alu	SINE
AL035662.65	8849	8936	9868235	+	L2c		L2
AL035662.65	8224	8696	9868233	+	L2a		L2
AL035662.65	8054	8223	9868234	-	FRAM	Alu	SINE
AL035662.65	7681	7986	9868233	+	L2a		L2
AL035662.65	6867	6903	9868232	+	(A)n		Simple_repeat
AL035662.65	5767	5897	9868231	-	L2c		L2
AL035662.65	5474	5750	9868229	-	L1MB4		L1
AL035662.65	5186	5473	9868230	+	AluJb	Alu	SINE
AL035662.65	4837	5185	9868229	-	L1MB4		L1
AL035662.65	4701	4836	9868228	-	AluSx	Alu	SINE
AL035662.65	4517	4590	9868227	+	MIRb	MIR	SINE
AL035662.65	3645	3957	9868226	-	AluJb	Alu	SINE
AL035662.65	3322	3406	9868225	+	AT_rich		Low_complexity
AL035662.65	3053	3287	9868224	-	L1M5		L1
AL035662.65	2187	2664	9868223	+	MLT1K	ERVL-MaLR	LTR
AL035662.65	1612	1716	9868222	+	MIRb	MIR	SINE
AL035662.65	1268	1422	9868222	+	MIRb	MIR	SINE
AL035662.65	1113	1234	9868221	-	MIRb	MIR	SINE
AL035662.65	336	534	9868220	+	MER63A	hAT-Blackjack	DNA
AL035662.65	32969	33255	9868269	-	AluJb	Alu	SINE
AL035662.65	33256	33428	9868267	-	L1ME3Cz		L1
AL035662.65	33429	33600	9868270	+	MER5A	hAT-Charlie	DNA
AL035662.65	33601	33724	9868267	-	L1ME3Cz		L1
AL035662.65	33725	34007	9868271	-	AluSx	Alu	SINE
AL035662.65	34008	34659	9868267	-	L1ME3Cz		L1
AL035662.65	34661	34740	9868266	-	MIR	MIR	SINE
AL035662.65	34994	35046	9868272	-	L1MC4		L1
AL035662.65	35050	35196	9868273	+	AluJb	Alu	SINE
AL035662.65	35934	36086	9868273	+	AluJb	Alu	SINE
AL035662.65	36087	36163	9868274	+	G-rich
AL035662.65	36186	36506	9868275	+	AluSx	Alu	SINE
AL035662.65	36514	36567	9868272	-	L1MC4		L1
AL035662.65	36604	36933	9868272	-	L1MC4		L1
AL035662.65	37079	37376	9868276	+	AluSx	Alu	SINE
AL035662.65	37632	37858	9868277	+	MIR	MIR	SINE
AL035662.65	38338	38758	9868278	+	MLT1D	ERVL-MaLR	LTR
AL035662.65	38948	39253	9868279	-	AluSx	Alu	SINE
AL035662.65	39782	39810	9868280	+	AT_rich		Low_complexity
AL035662.65	39884	39945	9868281	-	Tigger12c	TcMar-Tigger	DNA
AL035662.65	40015	40109	9868282	-	MLT1G	ERVL-MaLR	LTR
AL035662.65	40125	40410	9868282	-	MLT1G	ERVL-MaLR	LTR
AL035662.65	40428	40857	9868283	+	L2	L2	LINE
AL035662.65	40928	41017	9868284	+	MLT1C	ERVL-MaLR	LTR
AL035662.65	41059	41297	9868285	+	MIR	MIR	SINE
AL035662.65	41388	41470	9868286	+	LTR78B	ERV1	LTR
AL035662.65	41489	41950	9868287	+	Charlie4a	hAT-Charlie	DNA
AL035662.65	42012	42193	9868288	-	MIR	MIR	SINE
AL035662.65	42211	42495	9868289	+	AluSx	Alu	SINE
AL035662.65	42500	42669	9868290	-	MIRb	MIR	SINE
AL035662.65	43468	43596	9868291	-	FLAM_C	Alu	SINE
AL035662.65	43617	43820	9868292	-	MER3	hAT-Charlie	DNA
AL035662.65	43960	44011	9868293	+	MIR3	MIR	SINE
AL035662.65	44067	44231	9868294	-	MIRb	MIR	SINE
AL035662.65	44276	44727	9868295	-	LTR16C	ERVL	LTR
AL035662.65	44852	45197	9868296	+	MER1B	hAT-Charlie	DNA
AL035662.65	45369	45950	9868297	+	L1ME3G		L1
AL035662.65	46072	46203	9868298	+	FRAM	Alu	SINE
AL035662.65	46972	47310	9868299	-	MLT1F1	ERVL-MaLR	LTR
AL035662.65	47327	47396	9868300	+	(GA)n		Simple_repeat
AL035662.65	47399	47574	9868301	+	GA-rich
AL035662.65	47575	47641	9868302	+	(GA)n		Simple_repeat
AL035662.65	47642	47701	9868299	-	MLT1F1	ERVL-MaLR	LTR
AL035662.65	47702	47836	9868303	-	FLAM_C	Alu	SINE
AL035662.65	47837	48000	9868299	-	MLT1F1	ERVL-MaLR	LTR
AL035662.65	48170	48397	9868304	-	L2a		L2
AL035662.65	48858	48979	9868305	-	L2c		L2
AL035662.65	48999	49686	9868306	+	LTR78B	ERV1	LTR
AL035662.65	49803	50029	9868306	+	LTR78B	ERV1	LTR
AL035662.65	50128	50296	9868305	-	L2c		L2
AL035662.65	50871	50899	9868307	+	AT_rich		Low_complexity
AL035662.65	51277	51302	9868308	+	(TTCA)n
AL035662.65	51308	51536	9868309	-	L2b		L2
AL035662.65	51609	51976	9868309	-	L2b		L2
AL035662.65	51818	51859	9868310	+	L2a		L2
AL035662.65	52151	52215	9868311	-	MIRc	MIR	SINE
AL035662.65	52252	52563	9868312	+	AluSx	Alu	SINE
AL035662.65	52571	52604	9868313	+	(CAAAA)n		Simple_repeat
AL035662.65	52732	53041	9868314	-	AluJb	Alu	SINE
AL035662.65	53059	53369	9868315	-	AluSx	Alu	SINE
AL035662.65	55351	55553	9868316	-	MIRb	MIR	SINE
AL035662.65	55937	56162	9868317	-	MIRb	MIR	SINE
AL035662.65	56177	56507	9868318	+	MER113	hAT-Charlie	DNA
AL035662.65	56508	56805	9868319	+	AluSx	Alu	SINE
AL035662.65	56806	56883	9868318	+	MER113	hAT-Charlie	DNA
AL035662.65	56903	57040	9868320	+	MIR3	MIR	SINE
AL035662.65	58120	58230	9868321	-	MamRep1894	hAT	DNA
AL035662.65	59742	60034	9868322	+	AluSx	Alu	SINE
AL035662.65	60058	60221	9868323	-	L1ME4b		L1
AL035662.65	60222	60252	9868324	+	(CA)n		Simple_repeat
AL035662.65	60253	60292	9868323	-	L1ME4b		L1
AL035662.65	60295	60444	9868325	+	L2a		L2
AL035662.65	60480	60791	9868326	-	AluY	Alu	SINE
AL035662.65	60851	60979	9868327	+	MIRc	MIR	SINE
AL035662.65	60989	61298	9868328	+	AluSx	Alu	SINE
AL035662.65	61773	62001	9868329	+	MER20	hAT-Charlie	DNA
AL035662.65	62525	62657	9868330	+	MIR	MIR	SINE
AL035662.65	62748	62869	9868331	+	L1PA4		L1
AL035662.65	62882	62929	9868332	-	Charlie8	hAT-Charlie	DNA
AL035662.65	62930	63350	9868333	-	MER96B	hAT-Tip100	DNA
AL035662.65	63351	63750	9868332	-	Charlie8	hAT-Charlie	DNA
AL035662.65	64030	64052	9868334	+	(T)n
AL035662.65	65062	65247	9868335	+	L1M5		L1
AL035662.65	65228	65564	9868336	+	L1ME3G		L1
AL035662.65	65734	65930	9868337	-	MIRc	MIR	SINE
AL035662.65	66156	66181	9868338	+	(GGGGA)n		Simple_repeat
AL035662.65	66618	66713	9868339	+	MIRb	MIR	SINE
AL035662.65	66782	67062	9868340	+	AluSx	Alu	SINE
AL035662.65	67065	67117	9868341	+	(CAA)n		Simple_repeat
AL035662.65	67168	67290	9868342	-	MIR3	MIR	SINE
AL035662.65	67327	67466	9868343	-	MER5A	hAT-Charlie	DNA
AL035662.65	67475	67501	9868344	+	(TTTC)n
AL035662.65	67511	67785	9868345	-	AluSx	Alu	SINE
AL035662.65	67816	68200	9868346	+	LTR16C	ERVL	LTR
AL035662.65	68299	68434	9868347	+	MIR3	MIR	SINE
AL035662.65	68807	69010	9868348	-	MIRb	MIR	SINE
AL035662.65	69047	69220	9868349	-	MER102b	hAT-Charlie	DNA
AL035662.65	69221	69519	9868350	-	AluY	Alu	SINE
AL035662.65	69520	69581	9868349	-	MER102b	hAT-Charlie	DNA
AL035662.65	69592	69898	9868351	+	AluSx	Alu	SINE
AL035662.65	70865	71136	9868352	-	L1ME4a		L1
AL035662.65	71137	71417	9868353	-	AluJb	Alu	SINE
AL035662.65	71418	71476	9868352	-	L1ME4a		L1
AL035662.65	71556	71720	9868354	+	C-rich
AL035662.65	72324	72524	9868355	-	MIRb	MIR	SINE
AL035662.65	72537	72615	9868356	+	MER5B	hAT-Charlie	DNA
AL035662.65	72616	72913	9868357	-	AluSx	Alu	SINE
AL035662.65	72914	72981	9868356	+	MER5B	hAT-Charlie	DNA
AL035662.65	73405	73628	9868358	-	MIRb	MIR	SINE
AL035662.65	74628	74777	9868359	+	MamRep38	hAT	DNA
AL035662.65	76296	76515	9868360	-	MIRb	MIR	SINE
AL035662.65	76536	76709	9868361	+	L3	CR1	LINE
AL035662.65	76729	76848	9868362	+	MIR	MIR	SINE
AL035662.65	77247	77419	9868363	+	MER113	hAT-Charlie	DNA
AL035662.65	77421	78563	9868364	+	L2b		L2
AL035662.65	78565	78654	9868365	+	MER113	hAT-Charlie	DNA
AL035662.65	78655	79537	9868366	+	L1MB7		L1
AL035662.65	79538	79830	9868367	+	AluJb	Alu	SINE
AL035662.65	79831	79881	9868366	+	L1MB7		L1
AL035662.65	80086	80210	9868368	+	L2a		L2
AL035662.65	80241	80663	9868369	-	L2b		L2
AL035662.65	80699	80875	9868370	+	AluSx	Alu	SINE
AL035662.65	80913	81080	9868368	+	L2a		L2
AL035662.65	81083	81215	9868371	+	L2b		L2
AL035662.65	81224	81334	9868371	+	L2b		L2
AL035662.65	82028	82096	9868372	+	MER91A	hAT-Tip100	DNA
AL035662.65	82168	82253	9868373	+	MER91A	hAT-Tip100	DNA
AL035662.65	82254	82320	9868374	-	L2c		L2
AL035662.65	82350	82647	9868375	-	AluJb	Alu	SINE
AL035662.65	82653	82789	9868376	-	L2b		L2
AL035662.65	82887	83078	9868377	+	MIR	MIR	SINE
AL035662.65	83096	83199	9868378	-	L2b		L2
AL035662.65	83342	83420	9868379	+	L3	CR1	LINE
AL035662.65	83741	83820	9868380	+	MIR3	MIR	SINE
AL035662.65	83853	84163	9868381	-	AluJb	Alu	SINE
AL035662.65	84173	84420	9868382	-	MIRb	MIR	SINE
AL035662.65	85414	85472	9868383	-	MADE1	TcMar-Mariner	DNA
AL035662.65	85886	86177	9868384	-	AluSx	Alu	SINE
AL035662.65	86278	86486	9868385	-	MIRb	MIR	SINE
AL035662.65	87067	87216	9868386	+	MIRb	MIR	SINE
AL035662.65	87358	87380	9868387	+	AT_rich		Low_complexity
AL035662.65	88076	88372	9868388	-	AluSx	Alu	SINE
AL035662.65	88373	88467	9868389	-	MIR	MIR	SINE
AL035662.65	88468	88760	9868390	-	AluJb	Alu	SINE
AL035662.65	88761	88907	9868389	-	MIR	MIR	SINE
AL035662.65	89482	89593	9868391	+	MIRb	MIR	SINE
AL035662.65	89605	89706	9868392	-	MIRb	MIR	SINE
AL035662.65	89737	89788	9868393	-	L2b		L2
AL035662.65	90654	91074	9868394	+	L2a		L2
AL035662.65	91233	91576	9868395	+	L2c		L2
AL035662.65	91619	91682	9868396	+	MIR	MIR	SINE
AL035662.65	91685	92039	9868397	+	MLT1F2	ERVL-MaLR	LTR
AL035662.65	92042	92339	9868398	-	AluSx	Alu	SINE
AL035662.65	92359	92426	9868399	+	MIRb	MIR	SINE
AL035662.65	92427	92741	9868400	+	AluSx	Alu	SINE
AL035662.65	92742	92859	9868399	+	MIRb	MIR	SINE
AL035662.65	93013	93230	9868401	-	MIRb	MIR	SINE
AL035662.65	93231	93277	9868395	+	L2c		L2
AL035662.65	93759	93920	9868402	-	MIRb	MIR	SINE
AL035662.65	94481	94698	9868403	-	MIRb	MIR	SINE
AL035662.65	95007	95182	9868404	+	MER58A	hAT-Charlie	DNA
AL035662.65	1442	1448	102832076	N	DUST
AL035662.65	1726	1732	102832077	N	DUST
AL035662.65	3283	3406	102832078	N	DUST
AL035662.65	3542	3556	102832079	N	DUST
AL035662.65	3662	3673	102832080	N	DUST
AL035662.65	3831	3839	102832081	N	DUST
AL035662.65	4674	4711	102832082	N	DUST
AL035662.65	5300	5306	102832083	N	DUST
AL035662.65	5460	5473	102832084	N	DUST
AL035662.65	6624	6630	102832085	N	DUST
AL035662.65	6867	6907	102832086	N	DUST
AL035662.65	9861	9876	102832087	N	DUST
AL035662.65	11914	11921	102832088	N	DUST
AL035662.65	12242	12250	102832089	N	DUST
AL035662.65	12293	12305	102832090	N	DUST
AL035662.65	12809	12815	102832091	N	DUST
AL035662.65	13002	13008	102832092	N	DUST
AL035662.65	14951	14957	102832093	N	DUST
AL035662.65	15549	15555	102832094	N	DUST
AL035662.65	16532	16539	102832095	N	DUST
AL035662.65	17498	17510	102832096	N	DUST
AL035662.65	17749	17756	102832097	N	DUST
AL035662.65	18086	18092	102832098	N	DUST
AL035662.65	20530	20536	102832099	N	DUST
AL035662.65	20923	20935	102832100	N	DUST
AL035662.65	21688	21694	102832101	N	DUST
AL035662.65	21777	21784	102832102	N	DUST
AL035662.65	22085	22091	102832103	N	DUST
AL035662.65	23470	23499	102832104	N	DUST
AL035662.65	23684	23735	102832105	N	DUST
AL035662.65	24634	24641	102832106	N	DUST
AL035662.65	24719	24725	102832107	N	DUST
AL035662.65	25911	25917	102832108	N	DUST
AL035662.65	29501	29509	102832109	N	DUST
AL035662.65	29552	29558	102832110	N	DUST
AL035662.65	29738	29757	102832111	N	DUST
AL035662.65	29856	29886	102832112	N	DUST
AL035662.65	30188	30205	102832113	N	DUST
AL035662.65	31982	32005	102832114	N	DUST
AL035662.65	32296	32323	102832115	N	DUST
AL035662.65	32858	32886	102832116	N	DUST
AL035662.65	32964	32984	102832117	N	DUST
AL035662.65	33143	33149	102832118	N	DUST
AL035662.65	33686	33730	102832119	N	DUST
AL035662.65	34972	35032	102832120	N	DUST
AL035662.65	35178	35184	102832121	N	DUST
AL035662.65	35929	35938	102832122	N	DUST
AL035662.65	36087	36179	102832123	N	DUST
AL035662.65	36305	36316	102832124	N	DUST
AL035662.65	36472	36503	102832125	N	DUST
AL035662.65	36682	36689	102832126	N	DUST
AL035662.65	36995	37006	102832127	N	DUST
AL035662.65	37360	37376	102832128	N	DUST
AL035662.65	38776	38836	102832129	N	DUST
AL035662.65	38935	38972	102832130	N	DUST
AL035662.65	39123	39131	102832131	N	DUST
AL035662.65	39794	39810	102832132	N	DUST
AL035662.65	40853	40920	102832133	N	DUST
AL035662.65	40968	40977	102832134	N	DUST
AL035662.65	42486	42495	102832135	N	DUST
AL035662.65	43359	43413	102832136	N	DUST
AL035662.65	43458	43477	102832137	N	DUST
AL035662.65	45947	45953	102832138	N	DUST
AL035662.65	46057	46066	102832139	N	DUST
AL035662.65	46178	46211	102832140	N	DUST
AL035662.65	46398	46404	102832141	N	DUST
AL035662.65	47328	47663	102832142	N	DUST
AL035662.65	47695	47717	102832143	N	DUST
AL035662.65	51027	51033	102832144	N	DUST
AL035662.65	52531	52604	102832145	N	DUST
AL035662.65	52734	52746	102832146	N	DUST
AL035662.65	53048	53088	102832147	N	DUST
AL035662.65	53401	53467	102832148	N	DUST
AL035662.65	53933	53939	102832149	N	DUST
AL035662.65	56790	56805	102832150	N	DUST
AL035662.65	59114	59121	102832151	N	DUST
AL035662.65	59447	59507	102832152	N	DUST
AL035662.65	60222	60252	102832153	N	DUST
AL035662.65	60360	60369	102832154	N	DUST
AL035662.65	60477	60509	102832155	N	DUST
AL035662.65	60659	60665	102832156	N	DUST
AL035662.65	61272	61296	102832157	N	DUST
AL035662.65	61927	61950	102832158	N	DUST
AL035662.65	62873	62886	102832159	N	DUST
AL035662.65	63383	63391	102832160	N	DUST
AL035662.65	64030	64052	102832161	N	DUST
AL035662.65	64500	64547	102832162	N	DUST
AL035662.65	65271	65277	102832163	N	DUST
AL035662.65	65329	65389	102832164	N	DUST
AL035662.65	65560	65589	102832165	N	DUST
AL035662.65	66119	66212	102832166	N	DUST
AL035662.65	67068	67120	102832167	N	DUST
AL035662.65	67475	67502	102832168	N	DUST
AL035662.65	69221	69235	102832169	N	DUST
AL035662.65	69874	69898	102832170	N	DUST
AL035662.65	70437	70462	102832171	N	DUST
AL035662.65	71019	71029	102832172	N	DUST
AL035662.65	71137	71147	102832173	N	DUST
AL035662.65	71518	71636	102832174	N	DUST
AL035662.65	72616	72632	102832175	N	DUST
AL035662.65	72927	72933	102832176	N	DUST
AL035662.65	73664	73727	102832177	N	DUST
AL035662.65	75541	75606	102832178	N	DUST
AL035662.65	75691	75706	102832179	N	DUST
AL035662.65	78143	78149	102832180	N	DUST
AL035662.65	78313	78322	102832181	N	DUST
AL035662.65	78421	78431	102832182	N	DUST
AL035662.65	78607	78614	102832183	N	DUST
AL035662.65	78657	78665	102832184	N	DUST
AL035662.65	79356	79363	102832185	N	DUST
AL035662.65	79657	79663	102832186	N	DUST
AL035662.65	79824	79830	102832187	N	DUST
AL035662.65	79863	79915	102832188	N	DUST
AL035662.65	80847	80875	102832189	N	DUST
AL035662.65	81726	81734	102832190	N	DUST
AL035662.65	82349	82379	102832191	N	DUST
AL035662.65	82517	82529	102832192	N	DUST
AL035662.65	82721	82732	102832193	N	DUST
AL035662.65	83090	83101	102832194	N	DUST
AL035662.65	83853	83869	102832195	N	DUST
AL035662.65	84018	84036	102832196	N	DUST
AL035662.65	85886	85896	102832197	N	DUST
AL035662.65	86532	86543	102832198	N	DUST
AL035662.65	86864	86870	102832199	N	DUST
AL035662.65	87360	87375	102832200	N	DUST
AL035662.65	87425	87433	102832201	N	DUST
AL035662.65	87454	87460	102832202	N	DUST
AL035662.65	88079	88090	102832203	N	DUST
AL035662.65	90254	90279	102832204	N	DUST
AL035662.65	90643	90649	102832205	N	DUST
AL035662.65	90850	90888	102832206	N	DUST
AL035662.65	90913	90952	102832207	N	DUST
AL035662.65	92035	92069	102832208	N	DUST
AL035662.65	92545	92560	102832209	N	DUST
AL035662.65	92712	92741	102832210	N	DUST
AL035662.65	93333	93349	102832211	N	DUST
AL035662.65	94272	94286	102832212	N	DUST
AL031687.17	11702	11810	8314979	-	MIR	MIR	SINE
AL031687.17	11813	12111	8314980	+	AluJb	Alu	SINE
AL031687.17	12112	12172	8314981	+	(GAAA)n		Simple_repeat
AL031687.17	12184	12335	8314982	+	L1MEg		L1
AL031687.17	12535	12706	8314983	+	MIRb	MIR	SINE
AL031687.17	12979	13391	8314984	+	L2c		L2
AL031687.17	13372	13455	8314985	+	MIRb	MIR	SINE
AL031687.17	13574	13780	8314986	-	MIR	MIR	SINE
AL031687.17	14201	14262	8314987	+	MIRb	MIR	SINE
AL031687.17	14285	14479	8314988	-	MIR	MIR	SINE
AL031687.17	14479	14639	8314987	+	MIRb	MIR	SINE
AL031687.17	11513	11687	8314978	+	MIR	MIR	SINE
AL031687.17	10708	10764	8314977	+	MIR	MIR	SINE
AL031687.17	10532	10665	8314977	+	MIRb	MIR	SINE
AL031687.17	8374	8491	8314974	+	L2	L2	LINE
AL031687.17	8181	8373	8314976	+	MER53	hAT	DNA
AL031687.17	8089	8180	8314974	+	L2	L2	LINE
AL031687.17	7601	8074	8314975	-	MLT1J	ERVL-MaLR	LTR
AL031687.17	7132	7544	8314974	+	L2	L2	LINE
AL031687.17	7029	7126	8314973	-	MIR3	MIR	SINE
AL031687.17	6855	7055	8314972	-	MIR	MIR	SINE
AL031687.17	20192	20363	8314998	+	MIR	MIR	SINE
AL031687.17	20422	20676	8314993	+	L2b		L2
AL031687.17	21076	21232	8314999	-	MIRb	MIR	SINE
AL031687.17	21280	21468	8315000	-	AluJb	Alu	SINE
AL031687.17	21469	21507	8315001	+	(TG)n
AL031687.17	21508	21617	8315000	-	AluJb	Alu	SINE
AL031687.17	21618	22113	8315002	-	L2b		L2
AL031687.17	22141	22197	8315003	+	(TCCC)n
AL031687.17	22197	22349	8315004	+	T-rich
AL031687.17	22351	22659	8315005	-	AluSx	Alu	SINE
AL031687.17	22742	22872	8315006	-	L2a		L2
AL031687.17	23693	23949	8315007	-	MamRep38	hAT	DNA
AL031687.17	23955	24249	8315008	-	AluJb	Alu	SINE
AL031687.17	24382	24633	8315009	+	L2a		L2
AL031687.17	24634	24939	8315010	-	AluSx	Alu	SINE
AL031687.17	24940	24989	8315009	+	L2a		L2
AL031687.17	24955	25056	8315011	-	L2a		L2
AL031687.17	25051	25232	8315012	+	L2a		L2
AL031687.17	25285	25365	8315013	-	MIRb	MIR	SINE
AL031687.17	25375	25626	8315014	+	AluSx	Alu	SINE
AL031687.17	25627	25661	8315015	+	(CAAA)n		Simple_repeat
AL031687.17	25664	25709	8315016	+	(CA)n		Simple_repeat
AL031687.17	25710	25727	8315014	+	AluSx	Alu	SINE
AL031687.17	25927	26127	8315017	+	MIRc	MIR	SINE
AL031687.17	26128	26435	8315018	+	AluJb	Alu	SINE
AL031687.17	26436	26472	8315017	+	MIRc	MIR	SINE
AL031687.17	26473	26774	8315019	+	AluJb	Alu	SINE
AL031687.17	27659	27743	8315020	+	(CACCAT)n		Simple_repeat
AL031687.17	27757	27857	8315020	+	(CACCAT)n		Simple_repeat
AL031687.17	27933	28017	8315021	+	(CACCAT)n		Simple_repeat
AL031687.17	28095	28174	8315022	+	(CACCAT)n		Simple_repeat
AL031687.17	28186	28313	8315023	+	(CCA)n
AL031687.17	6165	6394	8314970	+	MLT1C	ERVL-MaLR	LTR
AL031687.17	5831	6164	8314971	+	AluSx	Alu	SINE
AL031687.17	5645	5830	8314970	+	MLT1C	ERVL-MaLR	LTR
AL031687.17	5397	5427	8314969	+	(TG)n
AL031687.17	5125	5354	8314969	+	(TG)n
AL031687.17	4713	4744	8314968	+	(TG)n
AL031687.17	3575	3805	8314967	+	MIRb	MIR	SINE
AL031687.17	3457	3519	8314966	+	GA-rich
AL031687.17	2081	2186	8314965	-	L2a		L2
AL031687.17	1959	2047	8314964	-	L2a		L2
AL031687.17	1141	1362	8314963	+	MIRb	MIR	SINE
AL031687.17	865	900	8314962	+	MER91B	hAT-Tip100	DNA
AL031687.17	273	712	8314961	+	MER113	hAT-Charlie	DNA
AL031687.17	85	145	8314960	-	MIR3	MIR	SINE
AL031687.17	15378	15441	8314989	+	C-rich
AL031687.17	15752	15855	8314990	+	L3	CR1	LINE
AL031687.17	16084	16209	8314991	+	L2c		L2
AL031687.17	16210	16371	8314992	+	MER5A	hAT-Charlie	DNA
AL031687.17	16372	16519	8314991	+	L2c		L2
AL031687.17	16559	16989	8314993	+	L2b		L2
AL031687.17	17051	17104	8314994	+	(TGGA)n		Simple_repeat
AL031687.17	17994	18163	8314995	+	MIRc	MIR	SINE
AL031687.17	19129	19149	8314996	+	(T)n
AL031687.17	20042	20185	8314997	+	L1MC5		L1
AL031687.17	28340	28426	8315024	-	MIR	MIR	SINE
AL031687.17	28549	28678	8315009	+	L2a		L2
AL031687.17	28664	28941	8315025	+	MIR	MIR	SINE
AL031687.17	28942	29070	8315026	+	MER85	PiggyBac	DNA
AL031687.17	29071	29169	8315025	+	MIR	MIR	SINE
AL031687.17	30409	30474	8315027	+	MER5B	hAT-Charlie	DNA
AL031687.17	30489	30509	8315028	+	AT_rich		Low_complexity
AL031687.17	30701	30931	8315029	-	MIRc	MIR	SINE
AL031687.17	31385	31523	8315030	+	MIR3	MIR	SINE
AL031687.17	31576	31863	8315031	-	L2b		L2
AL031687.17	32113	32284	8315032	-	MIR	MIR	SINE
AL031687.17	32319	32370	8315033	+	L2c		L2
AL031687.17	32388	32794	8315034	+	L2a		L2
AL031687.17	33089	33139	8315035	+	G-rich
AL031687.17	33825	33994	8315036	-	L3	CR1	LINE
AL031687.17	33978	34321	8315037	+	L2b		L2
AL031687.17	34414	34547	8315038	+	FLAM_C	Alu	SINE
AL031687.17	34582	34782	8315037	+	L2b		L2
AL031687.17	35113	35192	8315039	-	MIRb	MIR	SINE
AL031687.17	35210	35275	8315040	+	MIRb	MIR	SINE
AL031687.17	35281	35571	8315041	-	AluSx	Alu	SINE
AL031687.17	35584	35704	8315042	-	MIRb	MIR	SINE
AL031687.17	35775	35969	8315043	-	L2c		L2
AL031687.17	36646	36796	8315044	+	MIRc	MIR	SINE
AL031687.17	36825	37115	8315045	-	AluSx	Alu	SINE
AL031687.17	37163	37343	8315046	+	MIR	MIR	SINE
AL031687.17	37350	37469	8315047	-	MIRb	MIR	SINE
AL031687.17	37661	37836	8315048	+	MIRb	MIR	SINE
AL031687.17	37838	37865	8315049	+	(TA)n		Simple_repeat
AL031687.17	38830	38874	8315050	+	(CA)n		Simple_repeat
AL031687.17	38876	39658	8315051	+	L2a		L2
AL031687.17	40284	40409	8315052	+	MIRb	MIR	SINE
AL031687.17	40425	40497	8315053	+	T-rich
AL031687.17	40505	40816	8315054	-	AluY	Alu	SINE
AL031687.17	40818	41123	8315055	-	AluJb	Alu	SINE
AL031687.17	41133	41296	8315043	-	L2c		L2
AL031687.17	41909	41987	8315056	+	MIRb	MIR	SINE
AL031687.17	41999	42135	8315057	+	MIRb	MIR	SINE
AL031687.17	42454	42553	8315058	-	L2b		L2
AL031687.17	42558	42634	8315059	-	MIR3	MIR	SINE
AL031687.17	42635	42823	8315060	+	MER91A	hAT-Tip100	DNA
AL031687.17	42824	42897	8315059	-	MIR3	MIR	SINE
AL031687.17	42898	43194	8315061	-	AluY	Alu	SINE
AL031687.17	43195	43210	8315059	-	MIRc	MIR	SINE
AL031687.17	43352	43415	8315062	-	MIR3	MIR	SINE
AL031687.17	43568	43596	8315063	+	(TCC)n
AL031687.17	43786	43829	8315064	+	G-rich
AL031687.17	44024	44217	8315065	+	MIRb	MIR	SINE
AL031687.17	44531	44654	8315066	+	MIR	MIR	SINE
AL031687.17	44655	44964	8315067	+	AluSx	Alu	SINE
AL031687.17	44965	45059	8315066	+	MIR	MIR	SINE
AL031687.17	45119	45250	8315068	-	MIR	MIR	SINE
AL031687.17	45789	46061	8315069	-	MIRb	MIR	SINE
AL031687.17	46749	46890	8315070	+	MIRb	MIR	SINE
AL031687.17	47060	47395	8315071	+	L2a		L2
AL031687.17	47541	47666	8315072	+	L2b		L2
AL031687.17	48266	48425	8315073	+	L2b		L2
AL031687.17	48486	48588	8315074	-	MER91C	hAT-Tip100	DNA
AL031687.17	48620	48677	8315073	+	L2b		L2
AL031687.17	49104	49143	8315075	+	AT_rich		Low_complexity
AL031687.17	49144	49434	8315076	-	AluSx	Alu	SINE
AL031687.17	49449	50464	8315077	-	L2a		L2
AL031687.17	50705	50780	8315078	+	C-rich
AL031687.17	51246	51380	8315079	-	MIRc	MIR	SINE
AL031687.17	51417	51589	8315080	-	MIR	MIR	SINE
AL031687.17	52170	52284	8315081	+	MIRb	MIR	SINE
AL031687.17	52333	52576	8315082	+	MIR	MIR	SINE
AL031687.17	52706	52923	8315083	+	L3	CR1	LINE
AL031687.17	53058	53265	8315084	+	MIRb	MIR	SINE
AL031687.17	53268	53386	8315085	+	MIR	MIR	SINE
AL031687.17	53925	54008	8315086	+	MIRb	MIR	SINE
AL031687.17	54075	54228	8315087	+	MIRb	MIR	SINE
AL031687.17	54291	54789	8315088	-	L2a		L2
AL031687.17	54933	55486	8315089	+	L2c		L2
AL031687.17	55515	56182	8315090	+	L1ME3B		L1
AL031687.17	57713	57938	8315091	+	(CA)n		Simple_repeat
AL031687.17	57971	58063	8315091	+	(CA)n		Simple_repeat
AL031687.17	58270	58432	8315092	+	(CA)n		Simple_repeat
AL031687.17	58457	58765	8315093	-	AluSx	Alu	SINE
AL031687.17	58848	58904	8315094	+	MIR3	MIR	SINE
AL031687.17	59598	59638	8315095	+	(TG)n
AL031687.17	59820	59972	8315096	+	MIRb	MIR	SINE
AL031687.17	59973	60185	8315097	-	MER20	hAT-Charlie	DNA
AL031687.17	60186	60223	8315096	+	MIRb	MIR	SINE
AL031687.17	60222	60423	8315098	-	MIR	MIR	SINE
AL031687.17	60504	60645	8315099	+	GA-rich
AL031687.17	60646	60687	8315100	+	G-rich
AL031687.17	60689	60855	8315101	+	GA-rich
AL031687.17	61040	61099	8315102	-	MIRb	MIR	SINE
AL031687.17	61408	61810	8315103	+	MLT1H2	ERVL-MaLR	LTR
AL031687.17	61811	61838	8315104	+	(T)n
AL031687.17	61875	62297	8315105	-	MLT1H	ERVL-MaLR	LTR
AL031687.17	62442	62500	8315106	-	L2c		L2
AL031687.17	62519	62676	8315107	+	MIRb	MIR	SINE
AL031687.17	62751	62859	8315108	+	L2b		L2
AL031687.17	62868	63016	8315109	+	L2c		L2
AL031687.17	64027	64168	8315110	+	L2a		L2
AL031687.17	64169	64343	8315111	+	(TTTC)n
AL031687.17	64344	64384	8315110	+	L2a		L2
AL031687.17	64385	64693	8315112	-	AluSx	Alu	SINE
AL031687.17	64694	64919	8315110	+	L2a		L2
AL031687.17	64919	65007	8315113	-	MIRb	MIR	SINE
AL031687.17	65505	65618	8315114	+	L2b		L2
AL031687.17	65625	66223	8315115	+	L1ME4b		L1
AL031687.17	66302	66432	8315116	+	HAL1b	L1	LINE
AL031687.17	66600	66773	8315114	+	L2b		L2
AL031687.17	66774	66845	8315117	+	(TTC)n
AL031687.17	66846	67121	8315118	-	AluJb	Alu	SINE
AL031687.17	67122	67186	8315114	+	L2b		L2
AL031687.17	67342	67405	8315119	+	MIR3	MIR	SINE
AL031687.17	67985	68045	8315120	+	(CCCCG)n		Simple_repeat
AL031687.17	68374	68513	8315121	+	MIR	MIR	SINE
AL031687.17	68586	68653	8315122	-	MIRc	MIR	SINE
AL031687.17	69092	69121	8315123	+	(TGGGGG)n		Simple_repeat
AL031687.17	69746	69949	8315124	-	MIRb	MIR	SINE
AL031687.17	70026	70219	8315125	+	MIR	MIR	SINE
AL031687.17	70743	70817	8315126	-	MIRc	MIR	SINE
AL031687.17	70870	71026	8315127	-	MER63A	hAT-Blackjack	DNA
AL031687.17	71031	71072	8315128	-	MIR	MIR	SINE
AL031687.17	71137	71293	8315129	-	MIRb	MIR	SINE
AL031687.17	71275	71406	8315130	+	MIR	MIR	SINE
AL031687.17	71400	71472	8315129	-	MIRb	MIR	SINE
AL031687.17	71853	72002	8315131	+	MER5B	hAT-Charlie	DNA
AL031687.17	72036	72146	8315132	-	MIRb	MIR	SINE
AL031687.17	72305	72485	8315133	+	MIRb	MIR	SINE
AL031687.17	72828	73019	8315134	+	MIRc	MIR	SINE
AL031687.17	74065	74114	8315135	-	L2b		L2
AL031687.17	74098	74207	8315136	+	L2b		L2
AL031687.17	74672	74803	8315137	+	MIRc	MIR	SINE
AL031687.17	74878	75026	8315138	+	MIRc	MIR	SINE
AL031687.17	75193	75379	8315139	-	MER117	hAT-Charlie	DNA
AL031687.17	75380	75475	8315140	+	L2c		L2
AL031687.17	75636	75705	8315141	+	L2c		L2
AL031687.17	75895	76671	8315142	+	L2a		L2
AL031687.17	76672	76850	8315143	+	MER5A	hAT-Charlie	DNA
AL031687.17	76851	77030	8315142	+	L2a		L2
AL031687.17	77031	77188	8315144	+	(TA)n		Simple_repeat
AL031687.17	77192	77230	8315145	+	(TCTA)n
AL031687.17	77235	77260	8315146	+	(GA)n		Simple_repeat
AL031687.17	77261	77534	8315147	-	AluSx	Alu	SINE
AL031687.17	77536	77693	8315142	+	L2a		L2
AL031687.17	78294	78374	8315148	+	MIR3	MIR	SINE
AL031687.17	78415	78539	8315149	+	MIRc	MIR	SINE
AL031687.17	78861	78924	8315150	+	MIRb	MIR	SINE
AL031687.17	78945	79794	8315151	+	L2a		L2
AL031687.17	80160	80247	8315152	-	MIR3	MIR	SINE
AL031687.17	82005	82275	8315153	+	L2b		L2
AL031687.17	82353	82505	8315154	-	MER5A1	hAT-Charlie	DNA
AL031687.17	82642	82753	8315155	-	MIRb	MIR	SINE
AL031687.17	82892	83077	8315156	+	MIR	MIR	SINE
AL031687.17	83083	83326	8315157	+	MamRep38	hAT	DNA
AL031687.17	83328	83373	8315150	+	MIRb	MIR	SINE
AL031687.17	83402	83457	8315158	-	MIRb	MIR	SINE
AL031687.17	83583	83666	8315159	+	MIR3	MIR	SINE
AL031687.17	84353	84485	8315160	-	MIRb	MIR	SINE
AL031687.17	84490	84643	8315161	+	MIRb	MIR	SINE
AL031687.17	85035	85159	8315162	-	MIRb	MIR	SINE
AL031687.17	85437	85656	8315163	+	MIRb	MIR	SINE
AL031687.17	85785	86056	8315164	+	L2b		L2
AL031687.17	86110	86207	8315165	+	L2c		L2
AL031687.17	86323	86516	8315166	-	MIRb	MIR	SINE
AL031687.17	86966	86986	8315167	+	AT_rich		Low_complexity
AL031687.17	87736	87896	8315168	-	MIR	MIR	SINE
AL031687.17	87897	88214	8315169	+	MER2	TcMar-Tigger	DNA
AL031687.17	88215	88300	8315168	-	MIR	MIR	SINE
AL031687.17	88572	88724	8315170	+	MIR3	MIR	SINE
AL031687.17	89086	89373	8315171	+	AluSx	Alu	SINE
AL031687.17	89410	89524	8315172	+	MIRb	MIR	SINE
AL031687.17	89576	89773	8315173	-	MIRb	MIR	SINE
AL031687.17	89875	89950	8315174	+	MIRc	MIR	SINE
AL031687.17	89988	90010	8315175	+	(TTCA)n
AL031687.17	90395	90471	8315176	+	L2c		L2
AL031687.17	90747	90770	8315177	+	(TTCA)n
AL031687.17	90797	91260	8315178	-	L2c		L2
AL031687.17	91738	91780	8315179	+	(CAG)n		Simple_repeat
AL031687.17	92066	92101	8315180	+	GC_rich		Low_complexity
AL031687.17	92299	92417	8315181	-	L2b		L2
AL031687.17	94724	94814	8315182	-	L2a		L2
AL031687.17	94815	95118	8315183	+	AluSx	Alu	SINE
AL031687.17	95119	95419	8315182	-	L2a		L2
AL031687.17	95564	95853	8315184	-	AluSx	Alu	SINE
AL031687.17	95857	95952	8315185	-	MIRc	MIR	SINE
AL031687.17	96670	97260	8315186	-	L2a		L2
AL031687.17	97261	97567	8315187	+	AluJb	Alu	SINE
AL031687.17	97568	97858	8315188	+	AluJb	Alu	SINE
AL031687.17	97859	98776	8315186	-	L2a		L2
AL031687.17	99429	99537	8315189	+	MamRep38	hAT	DNA
AL031687.17	99584	99643	8315190	-	L2c		L2
AL031687.17	99647	99786	8315191	-	L2a		L2
AL031687.17	99819	99881	8315192	-	L2b		L2
AL031687.17	99971	100025	8315193	-	MIR	MIR	SINE
AL031687.17	100040	100302	8315192	-	L2b		L2
AL031687.17	100558	100893	8315194	+	MLT1L	ERVL-MaLR	LTR
AL031687.17	101569	101816	8315195	+	MIRb	MIR	SINE
AL031687.17	102576	102624	8315196	+	L2a		L2
AL031687.17	103113	103319	8315197	-	MIRb	MIR	SINE
AL031687.17	103413	103588	8315198	+	L2c		L2
AL031687.17	103746	103777	8315199	+	(TGGA)n		Simple_repeat
AL031687.17	103844	103948	8315200	-	L2a		L2
AL031687.17	103949	103994	8315201	+	(TG)n
AL031687.17	103995	104194	8315200	-	L2a		L2
AL031687.17	104335	104637	8315200	-	L2a		L2
AL031687.17	104648	104766	8315202	-	MIR	MIR	SINE
AL031687.17	104937	104977	8315203	-	L2a		L2
AL031687.17	105013	105165	8315204	-	MIRb	MIR	SINE
AL031687.17	105358	105463	8315205	+	(CA)n		Simple_repeat
AL031687.17	105827	105871	8315206	+	CT-rich
AL031687.17	105881	106329	8315207	-	L1ME3B		L1
AL031687.17	106330	106416	8315208	+	CT-rich
AL031687.17	106471	106514	8315209	+	(CA)n		Simple_repeat
AL031687.17	107181	107278	8315210	+	MIRc	MIR	SINE
AL031687.17	107557	107744	8315211	-	MIR	MIR	SINE
AL031687.17	107951	108066	8315212	-	MIRb	MIR	SINE
AL031687.17	108146	108247	8315213	+	MIR3	MIR	SINE
AL031687.17	108214	108288	8315214	+	MIR3	MIR	SINE
AL031687.17	108368	108674	8315215	-	LTR16	ERVL	LTR
AL031687.17	109311	109455	8315216	-	MIRb	MIR	SINE
AL031687.17	109511	109565	8315217	-	L3	CR1	LINE
AL031687.17	109817	109914	8315218	-	MIR3	MIR	SINE
AL031687.17	109967	110201	8315219	-	MIR	MIR	SINE
AL031687.17	110407	110522	8315220	+	L2b		L2
AL031687.17	110532	110667	8315221	-	L2c		L2
AL031687.17	111264	111358	8315221	-	L2c		L2
AL031687.17	111377	111594	8315222	+	MIRc	MIR	SINE
AL031687.17	111639	111781	8315223	-	MIR	MIR	SINE
AL031687.17	111890	112719	8315224	+	L2b		L2
AL031687.17	112734	113268	8315225	-	L2	L2	LINE
AL031687.17	113274	113357	8315224	+	L2b		L2
AL031687.17	113358	113990	8315226	-	L1MEg		L1
AL031687.17	113998	114067	8315227	+	L2a		L2
AL031687.17	114984	115033	8315228	+	L2a		L2
AL031687.17	115036	115654	8315229	+	L1MB7		L1
AL031687.17	115661	116204	8315228	+	L2a		L2
AL031687.17	116214	116665	8315230	-	L2c		L2
AL031687.17	116757	117007	8315230	-	L2c		L2
AL031687.17	117044	117186	8315231	-	MIR	MIR	SINE
AL031687.17	117386	117548	8315230	-	L2c		L2
AL031687.17	117549	117697	8315232	+	FLAM_C	Alu	SINE
AL031687.17	117698	117724	8315230	-	L2c		L2
AL031687.17	118089	118484	8315230	-	L2c		L2
AL031687.17	118604	118635	8315233	+	(GGA)n		Simple_repeat
AL031687.17	119116	119429	8315234	-	AluJb	Alu	SINE
AL031687.17	119530	119762	8315235	+	MIRb	MIR	SINE
AL031687.17	119836	120337	8315236	+	L1ME3G		L1
AL031687.17	120358	120405	8315237	+	MIRc	MIR	SINE
AL031687.17	120422	120662	8315238	-	MIRb	MIR	SINE
AL031687.17	120682	120957	8315239	+	AluSx	Alu	SINE
AL031687.17	121176	121289	8315240	+	MIRb	MIR	SINE
AL031687.17	121640	121835	8315241	-	L2	L2	LINE
AL031687.17	122435	122570	8315242	-	MIR	MIR	SINE
AL031687.17	122671	122762	8315243	-	L2a		L2
AL031687.17	123670	123789	8315244	-	MIRc	MIR	SINE
AL031687.17	123829	123989	8315245	+	MIRb	MIR	SINE
AL031687.17	124066	124173	8315246	-	MIR3	MIR	SINE
AL031687.17	124359	124400	8315247	+	(CA)n		Simple_repeat
AL031687.17	125001	125084	8315248	-	MIRb	MIR	SINE
AL031687.17	125129	125218	8315249	-	MamRep1894	hAT	DNA
AL031687.17	125920	126141	8315250	+	MER20	hAT-Charlie	DNA
AL031687.17	126188	126220	8315246	-	MIR3	MIR	SINE
AL031687.17	126303	126420	8315251	-	L2a		L2
AL031687.17	126427	126552	8315252	+	MIRb	MIR	SINE
AL031687.17	126668	126796	8315253	-	MIRb	MIR	SINE
AL031687.17	127514	127654	8315254	-	L2b		L2
AL031687.17	127645	127874	8315255	+	MIR	MIR	SINE
AL031687.17	127889	128520	8315251	-	L2a		L2
AL031687.17	128673	128856	8315256	+	L2c		L2
AL031687.17	128900	130038	8315257	+	L2a		L2
AL031687.17	130068	130200	8315258	+	L2b		L2
AL031687.17	130807	131022	8315259	+	MER20	hAT-Charlie	DNA
AL031687.17	131219	131270	8315260	+	G-rich
AL031687.17	131538	131848	8315261	+	AluSx	Alu	SINE
AL031687.17	131867	132104	8315262	-	MIR	MIR	SINE
AL031687.17	132110	132232	8315263	-	MIR	MIR	SINE
AL031687.17	132353	132550	8315264	-	MER20	hAT-Charlie	DNA
AL031687.17	132592	132702	8315265	-	MIR3	MIR	SINE
AL031687.17	132900	133095	8315266	+	MIRb	MIR	SINE
AL031687.17	133098	133198	8315267	+	MIR3	MIR	SINE
AL031687.17	133170	133458	8315268	+	L2b		L2
AL031687.17	133459	133501	8315269	+	(TG)n
AL031687.17	133502	133630	8315268	+	L2b		L2
AL031687.17	134277	134568	8315270	+	AluSx	Alu	SINE
AL031687.17	134583	134636	8315267	+	MIRb	MIR	SINE
AL031687.17	135965	136187	8315271	-	MIR	MIR	SINE
AL031687.17	136313	136604	8315272	-	AluJb	Alu	SINE
AL031687.17	136865	137001	8315273	-	MIRb	MIR	SINE
AL031687.17	138663	138858	8315274	-	L3b		CR1
AL031687.17	138898	138952	8315275	+	MIRb	MIR	SINE
AL031687.17	138919	138969	8315276	+	L2a		L2
AL031687.17	139155	139237	8315277	+	(TGGA)n		Simple_repeat
AL031687.17	139919	140039	8315278	-	L2b		L2
AL031687.17	140163	140182	8315279	+	(TAA)n		Simple_repeat
AL031687.17	140202	140405	8315280	-	MIR	MIR	SINE
AL031687.17	140541	140711	8315281	+	MIR3	MIR	SINE
AL031687.17	141017	141069	8315282	+	(CA)n		Simple_repeat
AL031687.17	141340	141660	8315283	+	L1ME4a		L1
AL031687.17	141749	141775	8315284	+	(CA)n		Simple_repeat
AL031687.17	141781	142000	8315285	-	MIRb	MIR	SINE
AL031687.17	142047	142070	8315286	+	(TA)n		Simple_repeat
AL031687.17	142071	142356	8315287	+	AluSx	Alu	SINE
AL031687.17	142766	142987	8315288	-	MER20	hAT-Charlie	DNA
AL031687.17	143196	143372	8315289	+	L2b		L2
AL031687.17	143530	143717	8315289	+	L2b		L2
AL031687.17	143957	144088	8315289	+	L2b		L2
AL031687.17	144234	144558	8315290	-	L2	L2	LINE
AL031687.17	144842	145017	8315291	-	MIRb	MIR	SINE
AL031687.17	145333	145415	8315292	-	MER91A	hAT-Tip100	DNA
AL031687.17	145417	145594	8315293	-	MER91A	hAT-Tip100	DNA
AL031687.17	146677	146754	8315294	-	L3b		CR1
AL031687.17	146783	146866	8315295	+	MIR3	MIR	SINE
AL031687.17	2794	2814	103258533	N	DUST
AL031687.17	3451	3519	103258534	N	DUST
AL031687.17	4213	4222	103258535	N	DUST
AL031687.17	4323	4378	103258536	N	DUST
AL031687.17	4658	4744	103258537	N	DUST
AL031687.17	5120	5134	103258538	N	DUST
AL031687.17	5305	5354	103258539	N	DUST
AL031687.17	5397	5427	103258540	N	DUST
AL031687.17	6112	6157	103258541	N	DUST
AL031687.17	8844	8850	103258542	N	DUST
AL031687.17	10307	10322	103258543	N	DUST
AL031687.17	10879	10900	103258544	N	DUST
AL031687.17	12082	12306	103258545	N	DUST
AL031687.17	14935	14976	103258546	N	DUST
AL031687.17	15378	15441	103258547	N	DUST
AL031687.17	17940	17951	103258548	N	DUST
AL031687.17	19129	19149	103258549	N	DUST
AL031687.17	21094	21101	103258550	N	DUST
AL031687.17	21282	21290	103258551	N	DUST
AL031687.17	21443	21507	103258552	N	DUST
AL031687.17	22120	22379	103258553	N	DUST
AL031687.17	23405	23464	103258554	N	DUST
AL031687.17	23553	23560	103258555	N	DUST
AL031687.17	23948	23980	103258556	N	DUST
AL031687.17	24646	24658	103258557	N	DUST
AL031687.17	25627	25728	103258558	N	DUST
AL031687.17	26419	26431	103258559	N	DUST
AL031687.17	26745	26774	103258560	N	DUST
AL031687.17	27739	27826	103258561	N	DUST
AL031687.17	27931	28050	103258562	N	DUST
AL031687.17	28095	28212	103258563	N	DUST
AL031687.17	29650	29656	103258564	N	DUST
AL031687.17	30490	30505	103258565	N	DUST
AL031687.17	31340	31346	103258566	N	DUST
AL031687.17	33060	33150	103258567	N	DUST
AL031687.17	33228	33252	103258568	N	DUST
AL031687.17	33458	33466	103258569	N	DUST
AL031687.17	34534	34580	103258570	N	DUST
AL031687.17	36157	36166	103258571	N	DUST
AL031687.17	36825	36835	103258572	N	DUST
AL031687.17	37838	37860	103258573	N	DUST
AL031687.17	38414	38492	103258574	N	DUST
AL031687.17	38779	38795	103258575	N	DUST
AL031687.17	38830	38874	103258576	N	DUST
AL031687.17	40425	40532	103258577	N	DUST
AL031687.17	40988	41005	103258578	N	DUST
AL031687.17	42898	42913	103258579	N	DUST
AL031687.17	43511	43627	103258580	N	DUST
AL031687.17	43776	43845	103258581	N	DUST
AL031687.17	43865	43887	103258582	N	DUST
AL031687.17	43907	44013	103258583	N	DUST
AL031687.17	44936	44976	103258584	N	DUST
AL031687.17	45550	45561	103258585	N	DUST
AL031687.17	47802	47896	103258586	N	DUST
AL031687.17	49008	49155	103258587	N	DUST
AL031687.17	50370	50379	103258588	N	DUST
AL031687.17	50703	50780	103258589	N	DUST
AL031687.17	55178	55225	103258590	N	DUST
AL031687.17	56200	56258	103258591	N	DUST
AL031687.17	57196	57208	103258592	N	DUST
AL031687.17	57708	57812	103258593	N	DUST
AL031687.17	57832	58068	103258594	N	DUST
AL031687.17	58194	58486	103258595	N	DUST
AL031687.17	58772	58840	103258596	N	DUST
AL031687.17	59598	59645	103258597	N	DUST
AL031687.17	60031	60045	103258598	N	DUST
AL031687.17	60516	60735	103258599	N	DUST
AL031687.17	60750	60878	103258600	N	DUST
AL031687.17	60937	60956	103258601	N	DUST
AL031687.17	61811	61838	103258602	N	DUST
AL031687.17	64147	64413	103258603	N	DUST
AL031687.17	66030	66037	103258604	N	DUST
AL031687.17	66333	66395	103258605	N	DUST
AL031687.17	66477	66550	103258606	N	DUST
AL031687.17	66774	66845	103258607	N	DUST
AL031687.17	67991	68046	103258608	N	DUST
AL031687.17	68831	68894	103258609	N	DUST
AL031687.17	69091	69134	103258610	N	DUST
AL031687.17	69271	69334	103258611	N	DUST
AL031687.17	69832	69842	103258612	N	DUST
AL031687.17	71531	71593	103258613	N	DUST
AL031687.17	72704	72712	103258614	N	DUST
AL031687.17	73474	73547	103258615	N	DUST
AL031687.17	73852	73863	103258616	N	DUST
AL031687.17	76771	76777	103258617	N	DUST
AL031687.17	77004	77231	103258618	N	DUST
AL031687.17	77235	77260	103258619	N	DUST
AL031687.17	77401	77407	103258620	N	DUST
AL031687.17	77535	77575	103258621	N	DUST
AL031687.17	78181	78187	103258622	N	DUST
AL031687.17	82704	82759	103258623	N	DUST
AL031687.17	83193	83240	103258624	N	DUST
AL031687.17	86080	86109	103258625	N	DUST
AL031687.17	86966	86985	103258626	N	DUST
AL031687.17	87556	87575	103258627	N	DUST
AL031687.17	87590	87596	103258628	N	DUST
AL031687.17	89356	89395	103258629	N	DUST
AL031687.17	89988	90010	103258630	N	DUST
AL031687.17	90747	90770	103258631	N	DUST
AL031687.17	91380	91438	103258632	N	DUST
AL031687.17	91738	91795	103258633	N	DUST
AL031687.17	93810	93817	103258634	N	DUST
AL031687.17	94342	94406	103258635	N	DUST
AL031687.17	94799	94805	103258636	N	DUST
AL031687.17	95097	95118	103258637	N	DUST
AL031687.17	95547	95581	103258638	N	DUST
AL031687.17	95731	95743	103258639	N	DUST
AL031687.17	96247	96299	103258640	N	DUST
AL031687.17	97392	97398	103258641	N	DUST
AL031687.17	97555	97567	103258642	N	DUST
AL031687.17	97687	97693	103258643	N	DUST
AL031687.17	97845	97858	103258644	N	DUST
AL031687.17	98832	98843	103258645	N	DUST
AL031687.17	100074	100125	103258646	N	DUST
AL031687.17	100395	100431	103258647	N	DUST
AL031687.17	102746	102789	103258648	N	DUST
AL031687.17	103949	103994	103258649	N	DUST
AL031687.17	104634	104662	103258650	N	DUST
AL031687.17	105358	105473	103258651	N	DUST
AL031687.17	105525	105598	103258652	N	DUST
AL031687.17	105811	105872	103258653	N	DUST
AL031687.17	106320	106416	103258654	N	DUST
AL031687.17	106471	106514	103258655	N	DUST
AL031687.17	106572	106589	103258656	N	DUST
AL031687.17	107454	107467	103258657	N	DUST
AL031687.17	109049	109094	103258658	N	DUST
AL031687.17	113463	113469	103258659	N	DUST
AL031687.17	115370	115389	103258660	N	DUST
AL031687.17	115721	115784	103258661	N	DUST
AL031687.17	116335	116346	103258662	N	DUST
AL031687.17	117687	117700	103258663	N	DUST
AL031687.17	118014	118060	103258664	N	DUST
AL031687.17	118604	118635	103258665	N	DUST
AL031687.17	119099	119144	103258666	N	DUST
AL031687.17	120306	120365	103258667	N	DUST
AL031687.17	120453	120460	103258668	N	DUST
AL031687.17	121993	121999	103258669	N	DUST
AL031687.17	122238	122249	103258670	N	DUST
AL031687.17	122989	123012	103258671	N	DUST
AL031687.17	124359	124400	103258672	N	DUST
AL031687.17	131219	131270	103258673	N	DUST
AL031687.17	131331	131344	103258674	N	DUST
AL031687.17	131819	131873	103258675	N	DUST
AL031687.17	133459	133501	103258676	N	DUST
AL031687.17	134562	134568	103258677	N	DUST
AL031687.17	136472	136484	103258678	N	DUST
AL031687.17	137927	137990	103258679	N	DUST
AL031687.17	138190	138253	103258680	N	DUST
AL031687.17	138743	138751	103258681	N	DUST
AL031687.17	139111	139261	103258682	N	DUST
AL031687.17	140150	140192	103258683	N	DUST
AL031687.17	141017	141069	103258684	N	DUST
AL031687.17	141568	141574	103258685	N	DUST
AL031687.17	141612	141623	103258686	N	DUST
AL031687.17	141706	141775	103258687	N	DUST
AL031687.17	142041	142070	103258688	N	DUST
AL031687.17	142356	142381	103258689	N	DUST
AL031687.17	142714	142726	103258690	N	DUST
AL031687.17	142824	142830	103258691	N	DUST
AL031687.17	144055	144113	103258692	N	DUST
AL031687.17	146251	146267	103258693	N	DUST
AL031687.17	147270	147276	103258694	N	DUST

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Curator Links

Alignment for AL035662.65 and AL031687.17

Alignment Summary

Alignment 1 of 1