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Alignment last updated: 01/15/2014 17:37:20

Join Legend

  • Red circle Serious alignment problem, requires review. (details...)
    • Zero, or more than one, overlaps
    • Half dove-tail >50 bp
    • Alignment identity <98%
    • Alignment length <50 bp
    • >2 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Yellow circle Minor alignment problem. (details...)
    • Exactly one overlap
    • Half dove-tail >0 bp and <=50bp
    • Alignment identity <99.6%
    • Alignment length <2000 bp
    • >0 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Green circle Excellent alignment, meets all defined criteria. (details...)
    • Exactly one RuleInfo
    • Half dove-tail <=0 bp
    • Alignment identity >=99.6%
    • Alignment length >=2000 bp
    • <=0 gaps, each gap >25 bp, not marked as an SSR
    • <=0 gaps, each gap >50 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, marked as an SSR
  • Black circle Certificate submitted, not yet approved.
  • Purple circle Certificate submitted and approved.
  • Gray circle Valid, contained clone
  • White circle Join not evaluated due to one accession not being finished.

Alignment for AC205628.4 and AC198126.4

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AC205628.4 Zea mays chromosome 1 clone CH201-119B2, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces [htgs_limited_order]

Length: 166,981 bp

AC198126.4 Zea mays chromosome 1 clone CH201-393E23, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces [htgs_limited_order]

Length: 189,945 bp

Alignment Summary

Join evaluation: red (half-dovetail of >50bp)

Alignment count: 1

Go to Endhit Table

  • Alignment 1
  • Align ID: 117407
  • Total Length: 7541
  • Aligned Length: 7541
  • Percent Identity: 99.9602
  • Number of Gaps: 0
  • Number of Mismatches: 3
  • First Tail: 65797bp
  • Source: CtgOverlap Seq-Align
Overlap Image
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Alignment 1 of 1

 AC205628.4 : + : 93644..101184
 AC198126.4 : + : 1..7541
 Mismatches = 3, Gaps = 0, Length = 7541
 Percent identity = 99.96%
 Score = 1.391e+04 bits (7532), Expect = 0
  4 BAC and 1 Fosmid bridging clones.
  4 BAC and 1 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AC205628.4 >93644   gatctgcatgctaaggtgctcaaatcggccgttgaaccatgacagaagtaagcacacacg 93703  
AC198126.4 >1       ............................................................ 60     

AC205628.4 >93704   tgttcgacgcgggctgacactcgggggcgcgctcagagcacgcccgtgcgcgaaccccct 93763  
AC198126.4 >61      ............................................................ 120    

AC205628.4 >93764   cgcgcccgcggccgcccatgaccatgcccgcgccacggctataaagcccgccccagtgcc 93823  
AC198126.4 >121     ............................................................ 180    

AC205628.4 >93824   tggctatcttccctgttgcatcctctgtcccgcaacgaactccccggagctcgcccatag 93883  
AC198126.4 >181     ............................................................ 240    

AC205628.4 >93884   ctctggcgacctctccgcgacccgccagagccgcccgaggacaaccaccagaggccgtga 93943  
AC198126.4 >241     ............................................................ 300    

AC205628.4 >93944   agaactgtttcccgcccatagctccggcgacctctcctgcgacgaactgtttctcgccct 94003  
AC198126.4 >301     ............................................................ 360    

AC205628.4 >94004   ccttcgctcgatccaagcccttaggtagcttccctaggaggctgtgaagcttgccagagc 94063  
AC198126.4 >361     ............................................................ 420    

AC205628.4 >94064   ttgaaccaaggaccccccgccaccggaaaggcgcaatcgcgctcgccggagtttggaacc 94123  
AC198126.4 >421     ............................................................ 480    

AC205628.4 >94124   ccaccggcgcacgtggaccgggtgagtctctgtgccattttccgattcactgcacacata 94183  
AC198126.4 >481     ............................................................ 540    

AC205628.4 >94184   gcctctacatcatcccgtggagctcatcgtgccatttaattgaactagatcgccgtggtt 94243  
AC198126.4 >541     ............................................................ 600    

AC205628.4 >94244   aggccagagctctcgccgccgacgagttcacccgcctgcgcgcgtggaccgatcgattcc 94303  
AC198126.4 >601     ............................................................ 660    

AC205628.4 >94304   gggcaccctcgtcgtcgagtcgtacctcgctgtgaccgccaggacctcccgaagccaacc 94363  
AC198126.4 >661     ............................................................ 720    

AC205628.4 >94364   ccgcccctcgccggacctctctcgccgccggtaagccacgccgccctattcctttccgtg 94423  
AC198126.4 >721     ............................................................ 780    

AC205628.4 >94424   gttactgtttacataaggggagggacctcgggggagaagaagaaaaggtcagggggtttt 94483  
AC198126.4 >781     ............................................................ 840    

AC205628.4 >94484   gtgcgctgtcagcgactcaggggaatagtagcgcaggggtatcactgaaaggattagttt 94543  
AC198126.4 >841     ............................................................ 900    

AC205628.4 >94544   aggaagaacccagggtcttcagtgcaaatgggttttccaggaaacctttttaaatattct 94603  
AC198126.4 >901     ............................................................ 960    

AC205628.4 >94604   gattaaatccaaacagaacttgaaaaaatcataacttcagtttggtttacccaaatcgag 94663  
AC198126.4 >961     ............................................................ 1020   

AC205628.4 >94664   tcaaaccaattttgtcagatcctaaatgatgtaaactacttaggaaaaatataaaacccc 94723  
AC198126.4 >1021    ............................................................ 1080   

AC205628.4 >94724   taagtgttacagaaaactttaaagttttgatttaaatgattaactggtcaaaagctaaaa 94783  
AC198126.4 >1081    ............................................................ 1140   

AC205628.4 >94784   gaaataaggaaaaatagctacactattagactggggttaagaaaatttagagaagtactt 94843  
AC198126.4 >1141    ............................................................ 1200   

AC205628.4 >94844   aatcacttcttaacttgtttaaaaataataaacccctctgtacaccccattaaagtagag 94903  
AC198126.4 >1201    ............................................................ 1260   

AC205628.4 >94904   tttgccatttaaatcactttttgcttaaagttgaaaaaaaatataaaaggtggtttaaat 94963  
AC198126.4 >1261    ............................................................ 1320   

AC205628.4 >94964   aaagaaccagggagcacccacatttttgttagctttcttattcagtatagtttactagaa 95023  
AC198126.4 >1321    ............................................................ 1380   

AC205628.4 >95024   aattttattataccctggtttagtacaaaagaaatgagataccttttattttaggaaaac 95083  
AC198126.4 >1381    ............................................................ 1440   

AC205628.4 >95084   aaggaaaacttagaaaaaccctaaaaaaataaccctgaagagaaaacaccccaaaccttg 95143  
AC198126.4 >1441    ............................................................ 1500   

AC205628.4 >95144   ggataaaaaatgttttgtatttataaacctagaaaaattataagttctgttgtttgacat 95203  
AC198126.4 >1501    ............................................................ 1560   

AC205628.4 >95204   ttttcaaataacaagttagtagtaagtgcctttttaacattaaactttagaaaatcacaa 95263  
AC198126.4 >1561    ............................................................ 1620   

AC205628.4 >95264   ctaaataaccaccaaataaccttttgtgatttttggcacagaagcatgttattaccttta 95323  
AC198126.4 >1621    ............................................................ 1680   

AC205628.4 >95324   gatgccagcaaaaatgacccttaggacagaacccacccctagataagagttgtagtgcaa 95383  
AC198126.4 >1681    ............................................................ 1740   

AC205628.4 >95384   agtgaccccctttgccccaacttttgttattttgtcccaggattattctaattattctgg 95443  
AC198126.4 >1741    ............................................................ 1800   

AC205628.4 >95444   accccaaatttataggacaggatacaatgaccaatagtaacccactgcaacgtttataga 95503  
AC198126.4 >1801    ............................................................ 1860   

AC205628.4 >95504   atttttggaaaaacttaaatcactgttgtagttcaaacacactcaaaaatcataaataga 95563  
AC198126.4 >1861    ............................................................ 1920   

AC205628.4 >95564   aaagaaaaaagggggattcatggtggaaactaatgttaccctaaccaaaccagaaaactg 95623  
AC198126.4 >1921    ............................................................ 1980   

AC205628.4 >95624   ccccccttaaatgcctacttaaacatctaaggggcaatccaagtttcaatccactatgct 95683  
AC198126.4 >1981    ............................................................ 2040   

AC205628.4 >95684   tatccctagacaaaacccaaacctaaattgataagcataaaccactaagagccacgtatg 95743  
AC198126.4 >2041    ............................................................ 2100   

AC205628.4 >95744   accaggaaaccctaagttactaactaacttaatttttcttcacttagcataatgattact 95803  
AC198126.4 >2101    ............................................................ 2160   

AC205628.4 >95804   aaatcctgcataatcatagcatacatattcttattcagtgcattcgatagattgcaacct 95863  
AC198126.4 >2161    ............................................................ 2220   

AC205628.4 >95864   cgctgacggagagtacatcctcgtgctggagcaaggagttgctcaggaggtagccccgga 95923  
AC198126.4 >2221    ............................................................ 2280   

AC205628.4 >95924   tccagtaccagagcctaccccagaggatctgcctgccccagcttttgaaggcaagccctg 95983  
AC198126.4 >2281    ............................................................ 2340   

AC205628.4 >95984   gttttatgcataacctattctatatgatattttactacacttaatgtttgtaggcttgta 96043  
AC198126.4 >2341    ............................................................ 2400   

AC205628.4 >96044   ttgtgcacttaagtgtaggagttgattgaaaccctagttgcatgaactcaggaatccttg 96103  
AC198126.4 >2401    ............................................................ 2460   

AC205628.4 >96104   ttgagatggatacagtatgctaggtcgagtagctgcttcgctaattagggatctcggtag 96163  
AC198126.4 >2461    ............................................................ 2520   

AC205628.4 >96164   aagtcgagtgatttttctagcactcgcacgaggtcaggaattggttgtacccactttcat 96223  
AC198126.4 >2521    ............................................................ 2580   

AC205628.4 >96224   atcatattgatgattggtctgtggacacggatccatggggatgcgtggtctacgagatga 96283  
AC198126.4 >2581    ............................................................ 2640   

AC205628.4 >96284   aattggaataaggattaacatgcggatacctgtgtcaagcgtttgaatgtactaaacata 96343  
AC198126.4 >2641    ............................................................ 2700   

AC205628.4 >96344   tgccgagaaatatggtaaatcagtaagcctagtacctgattgaacctgcccgcagacata 96403  
AC198126.4 >2701    ............................................................ 2760   

AC205628.4 >96404   tcccctcacgcgacctgagacgtggtctcccattccggttatggtgggtacaagtgtggt 96463  
AC198126.4 >2761    ............................................................ 2820   

AC205628.4 >96464   cactgcacgacggcagtcggggtcagtgaggcattgtacgccaaggcggtgagccctgat 96523  
AC198126.4 >2821    ............................................................ 2880   

AC205628.4 >96524   ctgttgccagggaatcgatggagacggttgatgtgtgtggggatggagtgcctcgccacg 96583  
AC198126.4 >2881    ............................................................ 2940   

AC205628.4 >96584   tcgtgtgtttaggtttaccttgcaatgataaaaactcgattcgaatcgtctgcttctcgc 96643  
AC198126.4 >2941    ............................................................ 3000   

AC205628.4 >96644   agataatgagactgcttgatccattgtactgcattaggtaacaagtggaaatgtgatgat 96703  
AC198126.4 >3001    ............................................................ 3060   

AC205628.4 >96704   ttggcaaaaatgttgattgctaaaattgcttgataccatgaatgagtagatagtacacct 96763  
AC198126.4 >3061    ............................................................ 3120   

AC205628.4 >96764   ttagtcttaagagagtcacactaaaacttgaaaaagctagaacttgatttttagactcag 96823  
AC198126.4 >3121    ............................................................ 3180   

AC205628.4 >96824   ctagtgtttttggcaaccaaacccttcagccaaacagatgcatgtctagaggtagaggag 96883  
AC198126.4 >3181    ............................................................ 3240   

AC205628.4 >96884   tagactcctcacaccgggtaagtctagctgagtattagtatactcatccttgcttgtggc 96943  
AC198126.4 >3241    ............................................................ 3300   

AC205628.4 >96944   ataattttacaggttctctggaggacatggttgctggagtgacttggtcatccatcttgc 97003  
AC198126.4 >3301    ............................................................ 3360   

AC205628.4 >97004   caccgggatggacagtcgagtgggaccctacctcggctgaggaggagcacgaggagtgat 97063  
AC198126.4 >3361    ............................................................ 3420   

AC205628.4 >97064   gggacaggcttccccatccctccgtttacttatcgttagttttattccgctgcattccga 97123  
AC198126.4 >3421    ............................................................ 3480   

AC205628.4 >97124   acaatgatgactacttttgcaaaaactccgatgatgatgtaataaatttaatactcctta 97183  
AC198126.4 >3481    ............................................................ 3540   

AC205628.4 >97184   atgtatggttttatgttttattgtatttgctctgtgcctcaccatcgagtgagtacgtgg 97243  
AC198126.4 >3541    ............................................................ 3600   

AC205628.4 >97244   tacttgatcctgttagtggcctcatcggactagatctgagggactgacgtgttattccta 97303  
AC198126.4 >3601    ............................................................ 3660   

AC205628.4 >97304   tttaagtgtggtctagcctctaaggcgggacgtaggcacttaagttggaataattcgggt 97363  
AC198126.4 >3661    ............................................................ 3720   

AC205628.4 >97364   ggttccgccacaatgatggccttattaaaaagaatgaaaaacttaaggctaagttagcta 97423  
AC198126.4 >3721    ............................................................ 3780   

AC205628.4 >97424   gctcccaagaagctattgaaaatttgctagagaaaatggaaattcttagcatacacaata 97483  
AC198126.4 >3781    ............................................................ 3840   

AC205628.4 >97484   atgagctaactactaagctagaaaacattggtagcatcccagcaacatctttagttgaaa 97543  
AC198126.4 >3841    ............................................................ 3900   

AC205628.4 >97544   tacctgaaattattaagaaagatgcttctacttcttgctttgatttaattgatgattcta 97603  
AC198126.4 >3901    ............................................................ 3960   

AC205628.4 >97604   acccctgcaaccaagttcttgttgagaatattgttgtagaaacatgatcggatgaggttg 97663  
AC198126.4 >3961    ............................................................ 4020   

AC205628.4 >97664   gaatggaaaatgaacaattaaagcaagaagtggctcgccttggcaaggctttgtatgaaa 97723  
AC198126.4 >4021    ............................................................ 4080   

AC205628.4 >97724   agaaaggcaaagccaaacaaatccgacctccacaggataacaccactgcgggagtgaaca 97783  
AC198126.4 >4081    ............................................................ 4140   

AC205628.4 >97784   agcctatggagggcgaaaccgtgatttgtaggttatgccacaaggaaggccataagtctt 97843  
AC198126.4 >4141    ............................................................ 4200   

AC205628.4 >97844   tccaatgcaaggcgatgaccggggataagcaaaggcaaaagctcaagcaaaagccaacaa 97903  
AC198126.4 >4201    ............................................................ 4260   

AC205628.4 >97904   gcaaaatctccaacacctacatcaaaaaggtggacaaaaaggttgctacaccatatttga 97963  
AC198126.4 >4261    ............................................................ 4320   

AC205628.4 >97964   tcaagaagaaaaagaatggaaaggtgatagcaatcaaggccaataagcaagccaacaaag 98023  
AC198126.4 >4321    ............................................................ 4380   

AC205628.4 >98024   gaaaggaagccaaacgcatctgggtgccaaaggaaataatttcaaccatgaaaagcaccg 98083  
AC198126.4 >4381    ............................................................ 4440   

AC205628.4 >98084   agaaggtttggatcctgaaagggaagtaagtagtctgaaggactacgagaaatttggaga 98143  
AC198126.4 >4441    ............................................................ 4500   

AC205628.4 >98144   cttggcaaagttaagatgtatatcatgggatacatcatattggatcatgtttattgccaa 98203  
AC198126.4 >4501    ............................................................ 4560   

AC205628.4 >98204   agtgagtgagtgaaaatcttggacccaaatttcccatccatgactaaggtaactagattt 98263  
AC198126.4 >4561    ............................................................ 4620   

AC205628.4 >98264   attgcatttcatttttagatatgagtatctatcttttatgtatctagtcttacctttcat 98323  
AC198126.4 >4621    ............................................................ 4680   

AC205628.4 >98324   gcctagcattagattttgttcttactttaagattaaatgcatgcatactaggtaaatcac 98383  
AC198126.4 >4681    ............................................................ 4740   

AC205628.4 >98384   atggtaggtctgcttgttttaaattcatacacttaagcaagcctacatgatttaaaatgt 98443  
AC198126.4 >4741    ............................................................ 4800   

AC205628.4 >98444   tcatttgagcacggcacatagctcctttatcactccataataaatgatgcatcaattgat 98503  
AC198126.4 >4801    ............................................................ 4860   

AC205628.4 >98504   attgttaacattactagtggtaaaacactcacataccacaatgtgtatcatttaatttat 98563  
AC198126.4 >4861    ............................................................ 4920   

AC205628.4 >98564   atgtgccaaagtttcggattatagataatttgcccctcttgatatcaaatcaaagtgcat 98623  
AC198126.4 >4921    ............................................................ 4980   

AC205628.4 >98624   gtctcctacaagtattcaaaacttgtatgcacacctttagggggaggttactctataatc 98683  
AC198126.4 >4981    ............................................................ 5040   

AC205628.4 >98684   taagactttgagactaacatcttttcaagtctatttgctgtgatagtctcattgtaagga 98743  
AC198126.4 >5041    ............................................................ 5100   

AC205628.4 >98744   aaatgaagtccccgatgaatgacaacaaacttccactgcaaaatctccaagaattctcat 98803  
AC198126.4 >5101    ............................................................ 5160   

AC205628.4 >98804   gtctcacaagcacgccattgaccttcgatcggtatctttgagactacatttagtatcatt 98863  
AC198126.4 >5161    ............................................................ 5220   

AC205628.4 >98864   tacatgtcttctccaatatttgattagactatatttcatatcatatacttccatgttgct 98923  
AC198126.4 >5221    ............................................................ 5280   

AC205628.4 >98924   aaaaatgcataagtggttcactcatattctgttacctatgcataagggaagttagtcttt 98983  
AC198126.4 >5281    ............................................................ 5340   

AC205628.4 >98984   tcaaatcacgtcttgtacctctagttttcacatgctttttcctaagtagaagatctctga 99043  
AC198126.4 >5341    ............................................................ 5400   

AC205628.4 >99044   cagggggagtttttcttcgtctctaaagggggagaaaattctttctaaaggagaacactc 99103  
AC198126.4 >5401    ............................................................ 5460   

AC205628.4 >99104   atttagggggagtaatcttttagtgcttctattgatattaattgataattctttagagag 99163  
AC198126.4 >5461    ............................................................ 5520   

AC205628.4 >99164   ggcaagtcttattcgcttcttatatgctcttaatgtcttccttttcggtggttgatgcca 99223  
AC198126.4 >5521    ............................................................ 5580   

AC205628.4 >99224   aagggggagaagttgtagggaccaaagcaatataaaatgtatcaaacaccaaacaccacc 99283  
AC198126.4 >5581    ............................................................ 5640   

AC205628.4 >99284   actttaaaattttatttcttcaagtggtttttcaagtggttttggttctttggtctaaaa 99343  
AC198126.4 >5641    ............................................................ 5700   

AC205628.4 >99344   taggaagtaagtgaattatggagttagggggaagcttaagtccataatatcactaagtgg 99403  
AC198126.4 >5701    ............................................................ 5760   

AC205628.4 >99404   gggataaaacatgcatcctagcaagtagattgcatattttcattcaaatgtttgttatat 99463  
AC198126.4 >5761    ............................................................ 5820   

AC205628.4 >99464   ttgcttgctttggttgtgttgtcatcaatcaccaaaaagggggagattgtaaggaaaatg 99523  
AC198126.4 >5821    ............................................................ 5880   

AC205628.4 >99524   gaccccaggccatttggctaaatgagttttggtgtttgatgattaacacaacttatgaac 99583  
AC198126.4 >5881    ............................................................ 5940   

AC205628.4 >99584   taatgtgtttgctagtgtttatgtttatagttcacaggatgcgaagaggattggactaag 99643  
AC198126.4 >5941    ............................................................ 6000   

AC205628.4 >99644   acactgaggatgcaacacctcaaataaagacataaaaagagcttagaagtccaagtctca 99703  
AC198126.4 >6001    ............................................................ 6060   

AC205628.4 >99704   agaccaaaggagcccaagaacaaaatacagaagacctagaagatgggctgtcacctggcg 99763  
AC198126.4 >6061    ............................................................ 6120   

AC205628.4 >99764   caccggtggcacacagttggctcaccggtggcacacatttggcgcaccggtggcacacaa 99823  
AC198126.4 >6121    ............................................................ 6180   

AC205628.4 >99824   ttggctcaccggtggcacacagttggcgcacaggacagccaacagagttttctgagagga 99883  
AC198126.4 >6181    ............................................................ 6240   

AC205628.4 >99884   ggcaccggactgtccggtgtgcaccggactgtcactattcactgtctggtgcacgtaacg 99943  
AC198126.4 >6241    ............................................................ 6300   

AC205628.4 >99944   gctagctgtcagaactatctgttggctgcacgccgttggcacacaccgatggcccacagt 100003 
AC198126.4 >6301    ............................................................ 6360   

AC205628.4 >100004  tggctcaccggtggcacacagttggctcaccgttggcacactgttggtgcaccggactgt 100063 
AC198126.4 >6361    ............................................................ 6420   

AC205628.4 >100064  ccggtgtgtcagaactagtcgttggctgcacagcgttggcgcactgttggcgcaccgttg 100123 
AC198126.4 >6421    ............................................................ 6480   

AC205628.4 >100124  gctcaccgttggcgcactgttggcacacagttggcgcaccgttggctgacaggactgtcc 100183 
AC198126.4 >6481    ............................................................ 6540   

AC205628.4 >100184  ggtgtgtcagaactagtcgttggctgcacagtgttggcgcactgttggcgcaccgttggc 100243 
AC198126.4 >6541    ............................................................ 6600   

AC205628.4 >100244  tcactgttggcgcacttttggcacacagttggcgcaccgttggctgacaggactgtccgg 100303 
AC198126.4 >6601    ............................................................ 6660   

AC205628.4 >100304  tgtgccacccttacaacagtctgcttttcagcggctagttgagttggggcctatatatac 100363 
AC198126.4 >6661    ............................................................ 6720   

AC205628.4 >100364  ttcacccaatcagccatttgaaggtgtgggagcccaagcaacataccaagacatattgta 100423 
AC198126.4 >6721    ............................................................ 6780   

AC205628.4 >100424  gacatttacaagtgctcaaacacccaagtgcttaatagaatcactcggtgattagcgtag 100483 
AC198126.4 >6781    ............................................................ 6840   

AC205628.4 >100484  gtgctttgcaaagtgtttaggttagttagaccgcattagcgcttgctctaggtgaatact 100543 
AC198126.4 >6841    ............................................................ 6900   

AC205628.4 >100544  agttagttgagtgagtttagacaaaccacaaaacccctcggctcttgcgcgagccattgt 100603 
AC198126.4 >6901    ............................................................ 6960   

AC205628.4 >100604  aattgtaacgagtggggtgagagtcttacgagatcgtgacaaccgtgtttgtgtcacagc 100663 
AC198126.4 >6961    ............................................................ 7020   

AC205628.4 >100664  cgccaccgtgtaccggagggaacgaggcctgcgacgtttcgaccggaagctcgatagtgg 100723 
AC198126.4 >7021    ............................................................ 7080   

AC205628.4 >100724  agacggcagggagcgtccgggaggagccgaaagcggagcaccacttgcgcgtggagaagg 100783 
AC198126.4 >7081    ............................................................ 7140   

AC205628.4 >100784  cccgcggctctctacggagttactcgaccgaggtgcttggccctcgcgtgggcttccctt 100843 
AC198126.4 >7141    ............................................................ 7200   

AC205628.4 >100844  tgcgtaggggcaccaacgaggattagtcaggaccttgcgcggttccggataactcggtaa 100903 
AC198126.4 >7201    ............................................................ 7260   

AC205628.4 >100904  aaatatcggcgtcatccacgagagtttgcatctctaccttgttctttaccttccgcattt 100963 
AC198126.4 >7261    ............................................................ 7320   

AC205628.4 >100964  atattaagcacttaagtttcaatcttgtattcatacttatttagtgtagattgaaactta 101023 
AC198126.4 >7321    ............................................................ 7380   

AC205628.4 >101024  gccattgcggtagagatagcaacacttagacaaaacctagtttgctcattctagtttgat 101083 
AC198126.4 >7381    ............................................................ 7440   

AC205628.4 >101084  tatttgcataggttttgctctagggatttaattgtggcctaacttagtaaaagttttaga 101143 
AC198126.4 >7441    ................................................ttt......... 7500   

AC205628.4 >101144  agtcctaattcaccccccccctcttaggcgtcacctatttc 101184 
AC198126.4 >7501    ......................................... 7541

Events
IdTypeDateWhodidComment
296149InitHasAlign01/15/2014 17:37:20cgi_chen
find_overlapId: find_overlap_app.cpp 404199 2013-06-20 22:08:27Z rafanovi $ built Aug  1 2013. Toolkit wrapper  using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib
Info: Blast Including ID: 545273877
Info: Running Blast Filter: 0
Info: Determined ID: gi|545273877 needs Merging.
Info: Blast Including ID: 545273877
Info: Running Blast Filter: 0
Info: Determined ID: gi|545273877 needs Merging.
Info: Blast Including ID: 545273877
Info: Running Blast Filter: 0
Info: Determined ID: gi|545273877 needs Merging.
Info: Best Rank: 14 in  for 545273877 of 1
Info:  NG returned 1 alignments

tpf_solo for TPF_updated_1_v2


down arrow BAC Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
CH201-103E17 AC205628.499.75%pos 97928 (F-)
 AC198126.499.75%pos 4285 (F-)
CH201-108F10 AC205628.499.73%pos 114 (F+)
 AC205628.4100%pos 186 (F+)
CH201-108H10 AC205628.499.4%pos 125 (F+)
 AC205628.4100%pos 117 (F+)
CH201-111O3AC205628.498.51%pos 39516 (R+)  
CH201-119B2 AC205628.4100%pos 35 (F+)
 AC205628.4100%pos 101 (F+)
 AC205628.4100%pos 189 (F+)
CH201-11C4 AC198126.4100%pos 172433 (F-)
 AC198126.4100%pos 172757 (F-)
 AC198126.499.27%pos 172774 (F-)
CH201-121K8AC205628.499.64%pos 136 (R+)  
CH201-165N22 AC205628.498.98%pos 39600 (F-)
 AC205628.498.98%pos 30139 (F-)
 AC205628.499.71%pos 39107 (F-)
CH201-170K22 AC198126.4100%pos 93170 (F+)
 AC198126.499.6%pos 93031 (F+)
CH201-190C23 AC198126.4100%pos 116433 (F-)
CH201-191K10AC198126.4100%pos 89599 (R-)  
CH201-197C23 AC198126.4100%pos 96558 (F+)
CH201-204F13 AC198126.4100%pos 185470 (F+)
CH201-20N24AC198126.499.82%pos 93049 (R+)  
AC198126.499.56%pos 93115 (R+)  
AC198126.4100%pos 93174 (R+)  
CH201-216M24 AC198126.499.84%pos 93096 (F+)
 AC198126.4100%pos 93206 (F+)
CH201-263J19AC198126.4100%pos 172501 (R-)  
AC198126.4100%pos 172842 (R-)  
CH201-279C4AC205628.4100%pos 42538 (R+) AC198126.499.88%pos 135897 (F-)
 AC198126.499.7%pos 136062 (F-)
CH201-330F1AC198126.4100%pos 103254 (R-)  
CH201-345F15AC198126.4100%pos 89006 (R+)  
CH201-356E19 AC198126.499.55%pos 113399 (F-)
 AC198126.4100%pos 113382 (F-)
CH201-35M18AC198126.498.63%pos 92599 (R-)  
AC198126.4100%pos 92566 (R-)  
CH201-380P3AC205628.499.86%pos 1872 (R+)  
CH201-393E23AC198126.4100%pos 189176 (R-) AC205628.4100%pos 93681 (F+)
AC198126.499.42%pos 189627 (R-) AC205628.4100%pos 93775 (F+)
AC198126.4100%pos 189318 (R-) AC198126.4100%pos 113 (F+)
 AC205628.4100%pos 93756 (F+)
 AC198126.4100%pos 38 (F+)
 AC198126.4100%pos 132 (F+)
CH201-404N22 AC205628.4100%pos 142770 (F-)
 AC198126.499.78%pos 47891 (F-)
 AC205628.499.78%pos 142622 (F-)
 AC198126.4100%pos 48039 (F-)
CH201-446G1 AC205628.4100%pos 22772 (F+)
CH201-448P2AC205628.499.84%pos 60032 (R+) AC198126.499.85%pos 104500 (F-)
CH201-460H12 AC205628.4100%pos 54657 (F-)
CH201-52H3 AC198126.4100%pos 93168 (F+)
 AC198126.4100%pos 93176 (F+)
CH201-576I11AC198126.499.72%pos 100140 (R+)  
CH201-58O9AC198126.499.73%pos 93361 (R+)  
CH201-71I12AC198126.4100%pos 93165 (R+)  
CH201-73H8AC198126.4100%pos 80075 (R-)  
CH201-87L18AC205628.4100%pos 67572 (R+)  
ZMMBBb-120E6AC205628.499.41%pos 94102 (R+)  
AC198126.499.41%pos 459 (R+)  
ZMMBBb-197O12 AC205628.497.01%pos 15047 (F+)
ZMMBBb-229O12 AC198126.499.37%pos 187092 (F-)
ZMMBBb-234N9AC205628.499.54%pos 64234 (R+) AC198126.499.71%pos 101760 (F-)
ZMMBBb-316K3AC205628.498.73%pos 18653 (R-)  
ZMMBBb-317M15AC205628.499.42%pos 55559 (R+)  
ZMMBBb-325L14AC198126.499.48%pos 121934 (R+)  
ZMMBBb-332H7AC198126.499.28%pos 172963 (R-)  
ZMMBBb-394G22AC205628.4100%pos 18835 (R-)  
ZMMBBb-437F14 AC198126.498.17%pos 156523 (F+)
ZMMBBb-519H21 AC205628.498.14%pos 61128 (F-)
ZMMBBb-522M6AC198126.497.54%pos 120447 (R-)  
ZMMBBb-546P18 AC205628.498.87%pos 40426 (F+)
ZMMBBb-571E13AC205628.497.77%pos 13234 (R+)  
ZMMBBb-577A10 AC205628.498.45%pos 162663 (F+)
ZMMBBb-607E22AC205628.499%pos 29954 (R-)  
down arrow Fosmid Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
Z_AI-1000L15 AC198126.4100%pos 97871 (F+)
Z_AI-1076A12 AC205628.4100%pos 9261 (F+)
Z_AI-1119B4AC198126.499.61%pos 48275 (R+)  
AC205628.499.61%pos 143006 (R+)  
Z_AI-1191G7 AC198126.498.81%pos 183651 (F+)
Z_AI-1201C6AC205628.4100%pos 3642 (R-)  
Z_AI-1475L11AC205628.499.22%pos 76235 (R-) AC205628.499.68%pos 41260 (F+)
Z_AI-16I18AC198126.499.63%pos 132503 (R-)  
Z_AI-19D23 AC205628.4100%pos 15190 (F-)
Z_AI-23D20 AC205628.4100%pos 132459 (F+)
 AC198126.4100%pos 37723 (F+)
Z_AI-273A22 AC205628.4100%pos 62443 (F+)
Z_AI-274F2 AC205628.499.87%pos 159466 (F-)
 AC198126.499.87%pos 142788 (F-)
Z_AI-278F23AC205628.4100%pos 29947 (R-)  
Z_AI-346I9AC198126.4100%pos 85118 (R-) AC198126.499.86%pos 50278 (F+)
 AC205628.499.86%pos 145009 (F+)
Z_AI-347L24 AC205628.4100%pos 16159 (F+)
Z_AI-364E18 AC198126.499.59%pos 116216 (F-)
Z_AI-464E10 AC198126.4100%pos 188448 (F-)
Z_AI-491P13 AC205628.499.85%pos 25494 (F-)
Z_AI-504B14AC205628.499.54%pos 61705 (R+) AC205628.4100%pos 94511 (F-)
 AC198126.4100%pos 868 (F-)
Z_AI-555H11 AC198126.499.33%pos 48220 (F-)
 AC205628.499.33%pos 142951 (F-)
Z_AI-556E12AC205628.499.85%pos 72371 (R+)  
Z_AI-565K16AC205628.4100%pos 34919 (R+)  
Z_AI-565M14 AC205628.4100%pos 11251 (F+)
Z_AI-580P3 AC205628.499.85%pos 87587 (F+)
Z_AI-586F4AC205628.4100%pos 94048 (R-)  
AC198126.4100%pos 405 (R-)  
Z_AI-627O2 AC198126.4100%pos 111603 (F+)
Z_AI-659J3 AC198126.4100%pos 97541 (F+)
Z_AI-663O8 AC198126.4100%pos 172308 (F+)
Z_AI-665L1 AC205628.4100%pos 67891 (F-)
Z_AI-693E4AC198126.499.84%pos 93703 (R-)  
Z_AI-760I12 AC198126.4100%pos 46942 (F-)
 AC205628.4100%pos 141673 (F-)
Z_AI-792E11AC205628.499.86%pos 71335 (R-) AC205628.4100%pos 34817 (F+)
Z_AI-800B19AC198126.4100%pos 109240 (R-)  
Z_AI-848I4AC198126.4100%pos 107210 (R-)  
Z_AI-889L9 AC205628.498.92%pos 92043 (F-)
Z_AI-891P3AC205628.4100%pos 93492 (R-)  
Z_AI-913N7AC198126.498.59%pos 104650 (R-)  
Z_AI-919F18 AC198126.4100%pos 185743 (F-)
Z_AI-974F19 AC205628.4100%pos 6800 (F+)
Z_AI-998F1AC205628.4100%pos 84327 (R+)  

down arrow Repeats
acc start stop repeat id strand name family class