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Alignment last updated: 12/19/2014 16:01:22

Join Legend

  • Red circle Serious alignment problem, requires review. (details...)
    • Zero, or more than one, overlaps
    • Half dove-tail >50 bp
    • Alignment identity <98%
    • Alignment length <50 bp
    • >2 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Yellow circle Minor alignment problem. (details...)
    • Exactly one overlap
    • Half dove-tail >0 bp and <=50bp
    • Alignment identity <99.6%
    • Alignment length <2000 bp
    • >0 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Green circle Excellent alignment, meets all defined criteria. (details...)
    • Exactly one RuleInfo
    • Half dove-tail <=0 bp
    • Alignment identity >=99.6%
    • Alignment length >=2000 bp
    • <=0 gaps, each gap >25 bp, not marked as an SSR
    • <=0 gaps, each gap >50 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, marked as an SSR
  • Black circle Certificate submitted, not yet approved.
  • Purple circle Certificate submitted and approved.
  • Gray circle Valid, contained clone
  • White circle Join not evaluated due to one accession not being finished.

Alignment for AC204414.4 and AC211265.5

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AC204414.4 Zea mays chromosome 1 clone CH201-284L24, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces [htgs_limited_order]

Length: 188,132 bp

AC211265.5 Zea mays chromosome 1 clone CH201-67H15, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces [htgs_limited_order]

Length: 193,165 bp

Alignment Summary

Join evaluation: red (>0 gap of 50bp or more, not simple sequence)

Alignment count: 1

Go to Endhit Table

  • Alignment 1
  • Align ID: 120644
  • Total Length: 6700
  • Aligned Length: 6233
  • Percent Identity: 99.9037
  • Number of Gaps: 13
  • Number of Mismatches: 6
  • First Tail: 20bp
  • Source: CtgOverlap Seq-Align
  • Valid Switchpoint: true (A)
Overlap Image

Switch Points
TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
A1881126240++chenhcTaxid 4577 chrom 1 Primary assembly2014-12-19 16:01:22.546121543120644


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Alignment 1 of 1

 AC204414.4 : + : 181419..188112
 AC211265.5 : + : 1..6239
 Mismatches = 6, Gaps = 13, Length = 6700
 Percent identity = 99.9%
 Score = 9321 bits (5047), Expect = 0
  5 BAC and 0 Fosmid bridging clones.
  5 BAC and 0 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AC204414.4 >181419  gaattctgcatatggtaatctcttgtcccaacctatcctgtcttgcaaagcacaagccct 181478 
AC211265.5 >1       ............................................................ 60     

AC204414.4 >181479  caacatatcctccagaatctgattagttctctctgtttgaccatctatctgcgggtgata 181538 
AC211265.5 >61      ............................................................ 120    

AC204414.4 >181539  agctgagctaaacttcaagtgtgtgcccaaagcttcatgcaactgctgcaaaaaaatgag 181598 
AC211265.5 >121     ............................................................ 180    

AC204414.4 >181599  aggtgaactgggtgcctctatctaatactatcttcttcggaatgtcatgcaagcacacaa 181658 
AC211265.5 >181     ............................................................ 240    

AC204414.4 >181659  tccgagccatgtatagttcgactaacaccgtactgttgtaggtggtcttgactggtatga 181718 
AC211265.5 >241     ............................................................ 300    

AC204414.4 >181719  aatgggccgcttttgtcaaacggtccactactacccagatagagtcataaccagtacgag 181778 
AC211265.5 >301     ............................................................ 360    

AC204414.4 >181779  tgcgaggcagaccgactatgaaatccattccgatctcatcccacttccactgaggaatct 181838 
AC211265.5 >361     ............................................................ 420    

AC204414.4 >181839  gcaatatttgcaacaaacgtgcaggtctctgatgttctgctttaatcctttgacaactgt 181898 
AC211265.5 >421     ............................................................ 480    

AC204414.4 >181899  cacatacaaccacatactctgctatctcccttttcataccgtaccaccagaatcttttct 181958 
AC211265.5 >481     ............................................................ 540    

AC204414.4 >181959  tcaggtcttggtacatcttctcactaccaggatgtatagagtatgcagtctcatgagctt 182018 
AC211265.5 >541     ............................................................ 600    

AC204414.4 >182019  ccttgagaatcagttcccggattgatttgatgtcaggaacacacagtctatccctgaacc 182078 
AC211265.5 >601     ............................................................ 660    

AC204414.4 >182079  ataccactccttctgtatcttcacggaaatccttgccttttccgtctatgatcagctgcc 182138 
AC211265.5 >661     ............................................................ 720    

AC204414.4 >182139  ggatctcattgattttctcatcatccttctgacctttcctgatgtcatgctctagagtgg 182198 
AC211265.5 >721     ............................................................ 780    

AC204414.4 >182199  gttccaactcgattgttactccttgagtgttgttcagaaatccgagattcaatttgtcaa 182258 
AC211265.5 >781     ............................................................ 840    

AC204414.4 >182259  attccttcgctagctcatacgacatcgggtgagcggccaacatattaaattgactctttc 182318 
AC211265.5 >841     ............................................................ 900    

AC204414.4 >182319  tgctcagagcatctgcaaccacatttgctttgcctgggtgataatgaatctccagctcat 182378 
AC211265.5 >901     ............................................................ 960    

AC204414.4 >182379  aatctttggtcaactctagccatcttcgctgcctcatgtttaactctgactgagtgaata 182438 
AC211265.5 >961     ............................................................ 1020   

AC204414.4 >182439  tgtatttgaggctcttatgatccatgtagatatcacacttctgcccataaagataatgcc 182498 
AC211265.5 >1021    ............................................................ 1080   

AC204414.4 >182499  tccaggtcttcaatgcatgaaccacgggtgctaattccagatcatgagtaggataattct 182558 
AC211265.5 >1081    ............................................................ 1140   

AC204414.4 >182559  tctcatgaatcttcaactgtcgggacgagtatgccactactctcccttcctgcatcaaca 182618 
AC211265.5 >1141    ............................................................ 1200   

AC204414.4 >182619  cacatcctagtctgatatacgaagcgtcacaatacactaagaatggcttgtgaacatctg 182678 
AC211265.5 >1201    ............................................................ 1260   

AC204414.4 >182679  gcagaatcagtactgatgtagttgtcaacttctccttcaatgtctcaaaggacttgtggc 182738 
AC211265.5 >1261    ............................................................ 1320   

AC204414.4 >182739  atactggggtccacttgaactcaaccttctttgctaacaaggctatcattggcctggcaa 182798 
AC211265.5 >1321    ............................................................ 1380   

AC204414.4 >182799  tcttggagaaaccttcaataaaatggcgataataaccggccattccgatgaaactcttga 182858 
AC211265.5 >1381    ............................................................ 1440   

AC204414.4 >182859  ttcctcggacatcttttggtgctttacagtccaagatagatgttactttcttcggatcca 182918 
AC211265.5 >1441    ............................................................ 1500   

AC204414.4 >182919  cagccaatccttctcggtttataatgtgacccaagaataggacttcattgatctagaact 182978 
AC211265.5 >1501    ............................................................ 1560   

AC204414.4 >182979  cgcatttgctaagcttggcatacagctggcaatctcgtagcctctgaagtactttcctga 183038 
AC211265.5 >1561    ............................................................ 1620   

AC204414.4 >183039  aatgctcctcatgctcttgctcattctgggaatatataagaatatcatcaatgaacacta 183098 
AC211265.5 >1621    ............................................................ 1680   

AC204414.4 >183099  ctatgaacttgtcgaggtagtccatgaacacactgttcattaagtacatgaagtaggctg 183158 
AC211265.5 >1681    ............................................................ 1740   

AC204414.4 >183159  gcgcattcgtcaaaccgaatgacatgaccgtgaactcatatagtccatacttggtgatga 183218 
AC211265.5 >1741    ............................................................ 1800   

AC204414.4 >183219  atgttgtcttcagtatatctgaaggtcggattctaagctgatggtagcatgaccttagat 183278 
AC211265.5 >1801    ............................................................ 1860   

AC204414.4 >183279  ctatcttcgagaacacactggctcctctcaactgatcgaataaatcttaaattctgggca 183338 
AC211265.5 >1861    ............................................................ 1920   

AC204414.4 >183339  gggtacttgttcttgatagtaacctcattcaaggatctgtagtcaatacacatcctcttt 183398 
AC211265.5 >1921    ............................................................ 1980   

AC204414.4 >183399  gtgccatccttcttctccacaaacagcacttgggctgcccaaggcgaggtacttggtctg 183458 
AC211265.5 >1981    ............................................................ 2040   

AC204414.4 >183459  atataacctttctccaacaactcatcaatctgcttcttgagttccaccaactttggtcca 183518 
AC211265.5 >2041    ............................................................ 2100   

AC204414.4 >183519  gacactcgataggctcttttggaaataggggcggtgcctggtataagttatatggcaaat 183578 
AC211265.5 >2101    ............................................................ 2160   

AC204414.4 >183579  tcaaccttcctttcaggtggcataccaggtaactcctcgggaaacacatctgggaattct 183638 
AC211265.5 >2161    ............................................................ 2220   

AC204414.4 >183639  gacactacattgatagcctctgatgatttaatctcttcaatatgggcggtgacttggtaa 183698 
AC211265.5 >2221    ............................................................ 2280   

AC204414.4 >183699  taactccctttccttggtcctgacaagatcaactctactaacacttcttctcctgataag 183758 
AC211265.5 >2281    ............................................................ 2340   

AC204414.4 >183759  gacactaacttcaccgttctcttgtcacagttaagactggcttgatacttggttagccaa 183818 
AC211265.5 >2341    ............................................................ 2400   

AC204414.4 >183819  ttcatccctaggatgacatctatagttgcatcctggttacccataactattaaatcagca 183878 
AC211265.5 >2401    ............................................................ 2460   

AC204414.4 >183879  gtgaactctatcccccttatttgaacctttgcactagggcaaaatctatcagtttgggtc 183938 
AC211265.5 >2461    ............................................................ 2520   

AC204414.4 >183939  cttccaccaactgaactaactctcatgggtggatacatgggtgctactggtatactatgt 183998 
AC211265.5 >2521    ............................................................ 2580   

AC204414.4 >183999  gtttctacccatgacgcagtcacaaaagaatgcattgcttctagtatcaaataagacatt 184058 
AC211265.5 >2581    ......................................-..................... 2639   

AC204414.4 >184059  tgcagaatgggtactcgactgaaaaacgtacctaatgccactcctggagtctcctggact 184118 
AC211265.5 >2640    ........-............-...................................... 2697   

AC204414.4 >184119  gtgtcggcctccaagtgggtccacctttccatactgggcacgaggttgcccatggttgtt 184178 
AC211265.5 >2698    ..................t.-....................................... 2756   

AC204414.4 >184179  gccctcctggctgcattgcatcctgcctgactagggcattgggagctggctgctgctgag 184238 
AC211265.5 >2757    .-.......................................................... 2815   

AC204414.4 >184239  ctgctttctttgggcaatgattcgcccagtggccttgttccccacagtggaaacatgcac 184298 
AC211265.5 >2816    ............................................................ 2875   

AC204414.4 >184299  gacttcctccttgctctagcgctgcttggttgttctggttggttgctggggcaggaagat 184358 
AC211265.5 >2876    ............................................................ 2935   

AC204414.4 >184359  gggctgcctggttgatctgccgctggtattgatttcctccttgctggttgttctgacggt 184418 
AC211265.5 >2936    ............................................................ 2995   

AC204414.4 >184419  actgctgctgctgctgaggaaactgcctctggtactgctgctggttctgacggtgatgct 184478 
AC211265.5 >2996    ............................................................ 3055   

AC204414.4 >184479  ggtgctggtgaccttgcttgaatggctgaggtgggttgcctgagtagcgaggacggctgc 184538 
AC211265.5 >3056    ............................................................ 3115   

AC204414.4 >184539  tactctcaacctgaggtccaccaatcttacgtttcctgtcctccatctcccgacgcttcc 184598 
AC211265.5 >3116    ............................................................ 3175   

AC204414.4 >184599  tttctatcatgattgctctgtctatcaagtgctggaaggtagggaaggttggttcatcag 184658 
AC211265.5 >3176    ............................................................ 3235   

AC204414.4 >184659  ctgatagtggaggggatcaaccaatcctctcaagaagcggtactgcctcttggcatccgt 184718 
AC211265.5 >3236    ............................................................ 3295   

AC204414.4 >184719  gttgacatcttttggggcataacgtgacagctgcagaaacttgtccctgtactcgctgac 184778 
AC211265.5 >3296    ............................................................ 3355   

AC204414.4 >184779  ggataggggaccctacttcaaggcgataaactcctccttcctcactatcatcagtccctc 184838 
AC211265.5 >3356    ............................................................ 3415   

AC204414.4 >184839  gggcacatggtagcgacggaagttgtccctaaattcttcccaagagatggcttcagggtt 184898 
AC211265.5 >3416    ............................................................ 3475   

AC204414.4 >184899  ggcatgagtggcgaggtaagactcccaccaagactatgctgctcccctcagttgtcgggg 184958 
AC211265.5 >3476    ............................................................ 3535   

AC204414.4 >184959  accgtacaacaccttctcacgatcgttccactgagcagtgtgcaactcacactccatggt 185018 
AC211265.5 >3536    ............................................................ 3595   

AC204414.4 >185019  acacaaccaatcttcagcgtccatgggatcagcagaataggcaaaaacaaggggatgacc 185078 
AC211265.5 >3596    ............................................................ 3655   

AC204414.4 >185079  cctcatgaactctgcccgcttgtctctaggcatttgaggcatctgaacttgcacctgagg 185138 
AC211265.5 >3656    ............................................................ 3715   

AC204414.4 >185139  ctgaggcggtggtggctgctgctgcacttgctgcattgctgctaaggtctgtccgattgc 185198 
AC211265.5 >3716    ............................................................ 3775   

AC204414.4 >185199  ctgaactactcgagtctgcatcaagaacatttgctcaatgttcatcgggggtggcggtgg 185258 
AC211265.5 >3776    ............................................................ 3835   

AC204414.4 >185259  caaatgctgctgcggggctgcctcctcttggggtgcctgctatttattaggctgagcacg 185318 
AC211265.5 >3836    ............................................................ 3895   

AC204414.4 >185319  ccttgcacctctgcgcctgttctcagacatctgtagaaatcacacacatatatcaaatct 185378 
AC211265.5 >3896    ............................................................ 3955   

AC204414.4 >185379  gactctgcagtctttcaacataagaaaagatgtatagaaaatcttcatagcactgaacaa 185438 
AC211265.5 >3956    ............................................................ 4015   

AC204414.4 >185439  ttgaccatctccgctgacagcttctcagataaagaggaaagtggaaataaatggattgcc 185498 
AC211265.5 >4016    ............................................................ 4075   

AC204414.4 >185499  caactaaataactaactttattaataactacaccaagttgcaggggatacccacaccttg 185558 
AC211265.5 >4076    ............................................................ 4135   

AC204414.4 >185559  gtgacaatcattacaaagatccaacttcagtacatgtccatcataacaagcatccaacat 185618 
AC211265.5 >4136    ............................................................ 4195   

AC204414.4 >185619  aaaataagcaaactaactcaactaagactgacttgactaagacactgaactaagcattat 185678 
AC211265.5 >4196    ............................................................ 4255   

AC204414.4 >185679  tacagacttcgactctgtcgatctagggatccaaatctatccgggtcctgcagtctgggg 185738 
AC211265.5 >4256    ............................................................ 4315   

AC204414.4 >185739  taccacagtcgaagcgtccgcggggcggtgaacggtaagggtgcatgaatctcgacaaac 185798 
AC211265.5 >4316    ................a..a........................-............--- 4371   

AC204414.4 >185799  gaatcaagctgaatcataagaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn 185858 
AC211265.5 >-1      ------------------------------------------------------------ -1     

AC204414.4 >185859  nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn 185918 
AC211265.5 >-1      ------------------------------------------------------------ -1     

AC204414.4 >185919  nnncatctagagattcgtctgagctgttttgagttgagattctatcggttttcatttgtg 185978 
AC211265.5 >-1      ------------------------------------------------------------ -1     

AC204414.4 >185979  cactcttttgtgtgtgtggtcttgctgcatttgcgtgcttgtgtgtgttgctactccctc 186038 
AC211265.5 >-1      ------------------------------------------------------------ -1     

AC204414.4 >186039  ccttactcttgcccttgattgtgatcatactgtgataagagagacaaactccctcttgta 186098 
AC211265.5 >-1      ------------------------------------------------------------ -1     

AC204414.4 >186099  aaaatgacttgactaagacactgaactaagcattataacagacttcgactctgtcgatct 186158 
AC211265.5 >-1      ------------------------------------------------------------ -1     

AC204414.4 >186159  agggatccaaatctatccgggtcctgcagtctggggtaccacagtcgaagcgaccacggg 186218 
AC211265.5 >-1      ------------------------------------------------------------ -1     

AC204414.4 >186219  gcggtgaacggtaagggtgctgaatctcgacaggggcgggagaaccaccatccagatagt 186278 
AC211265.5 >4372    --------------------------------............................ 4399   

AC204414.4 >186279  ggcgtgctgcgctctcagcacgcaattccacaacctccgctcgaaccttgcccaactcat 186338 
AC211265.5 >4400    ............................................................ 4459   

AC204414.4 >186339  caagggcatggtccaactctgtgttgagcatggtacccaagttgaccatgctgttcagcc 186398 
AC211265.5 >4460    ............................................................ 4519   

AC204414.4 >186399  tgagattaccctcaccaactggcgaggcaatcacacctccagcactgccgattgaacgac 186458 
AC211265.5 >4520    ............................................................ 4579   

AC204414.4 >186459  gaggatagtacttcaggtcaaggccatcagctaccccgctgaacaacgagcaatactgag 186518 
AC211265.5 >4580    ............................................................ 4639   

AC204414.4 >186519  aaagtgcccatcgtgctgcatcttgcatggctgcctcggcagtatccctctcagtaatag 186578 
AC211265.5 >4640    ............................................................ 4699   

AC204414.4 >186579  aatagtgctctgagaaggcctctgcaccccggaaatcatcgtctagacggcgcaccaagc 186638 
AC211265.5 >4700    ............................................................ 4759   

AC204414.4 >186639  aagtagcctcccactggtccgggtatagtccgcgacgatgctggtagactacacaatagt 186698 
AC211265.5 >4760    ............................................................ 4819   

AC204414.4 >186699  actcaatagaccatgtgtgtcggtagaaggcctgacgcagcagggtgtcgagagcgtcgt 186758 
AC211265.5 >4820    ............................................................ 4879   

AC204414.4 >186759  ggaagtgacacccgtgagcagcgtcacgagtgatgggtctagcaatccatcccttcggct 186818 
AC211265.5 >4880    ............................................................ 4939   

AC204414.4 >186819  ccttcgagagctctgtgtcgtggctcgaactgccaccggcgtcgtcgtcgtctccgtctc 186878 
AC211265.5 >4940    ............................................................ 4999   

AC204414.4 >186879  cgttagggtctcctccagcagccgggatgccctgaggttgaagcgtccccaatcctctag 186938 
AC211265.5 >5000    ............................................................ 5059   

AC204414.4 >186939  gactcaaatgtgatacaattactagtcccaggaggctagcaaacacatttatacatcaga 186998 
AC211265.5 >5060    ............................................................ 5119   

AC204414.4 >186999  tgataccaaatctgcttaaacgagacaaacctataaaggtggcggtcaactttaagagtt 187058 
AC211265.5 >5120    ............................................................ 5179   

AC204414.4 >187059  ggtccataactcgagacatatcatcagagtggggctgaagcagcccgatatacgcagcga 187118 
AC211265.5 >5180    ............................................................ 5239   

AC204414.4 >187119  agcaagtcagcggtccaacagccacaggcaaggttgggaacagtcgtaacttttacccga 187178 
AC211265.5 >5240    ...................................................c........ 5299   

AC204414.4 >187179  tctcctttttctgaaaaacaacaaataagc-agggtgagtacaaacgtactcagcagccc 187237 
AC211265.5 >5300    ..............................a............................. 5359   

AC204414.4 >187238  accttcacccgcggaatggggaaatcagatataatgcatggaatatgtagagctcaagat 187297 
AC211265.5 >5360    ............................................................ 5419   

AC204414.4 >187298  atttgcagaaacagcaatattttatgcagggttgttttgaaaaacattttgtattttgca 187357 
AC211265.5 >5420    ............................................................ 5479   

AC204414.4 >187358  aagcgcatcctctccaaaaggagcaggaagtttttcagtattataacaaaatcccctgga 187417 
AC211265.5 >5480    ............................................................ 5539   

AC204414.4 >187418  ctaaaccatccaggtatctcagcagtttcccactggttttccttttcaaaaacagctact 187477 
AC211265.5 >5540    ............................................................ 5599   

AC204414.4 >187478  ggacttcccgtccaccatagctcacggctcaaccgccggtccttttaaaaaccacttttc 187537 
AC211265.5 >5600    ............................................................ 5659   

AC204414.4 >187538  tcaaacccatcttttttttggaaaacaaaacattaattgccataccataccagactcgtc 187597 
AC211265.5 >5660    ............................................................ 5719   

AC204414.4 >187598  cattcctgtggacacagactattcgaataggtttgaactctgcgcagaggtgtacacttt 187657 
AC211265.5 >5720    ............................................................ 5779   

AC204414.4 >187658  acccactagttcggctctgcgatcccatggccaatgagacccgaatccgactctctttct 187717 
AC211265.5 >5780    ............................................................ 5839   

AC204414.4 >187718  ttccccgcacgtcctaaccttaacggttatccggaaggggtcaggccaccaccatgtcca 187777 
AC211265.5 >5840    ............................................................ 5899   

AC204414.4 >187778  aaccggacaaaactttccccctccttatcctcccggtgctccccagccttcataaccctg 187837 
AC211265.5 >5900    ............................................................ 5959   

AC204414.4 >187838  gggttggaccgtacgagttcagattgagtgactgcccacacagtctcgagtggttgtact 187897 
AC211265.5 >5960    ............................................................ 6019   

AC204414.4 >187898  tatcatgagtacaggtagtgaaagatgacaaaccggtccttatatgaggggacaatcctt 187957 
AC211265.5 >6020    ............................................................ 6079   

AC204414.4 >187958  ctgctcacgcctaaaccagctgagccaacaccttaggccctcccctaaaccagggagtcc 188017 
AC211265.5 >6080    ............................................................ 6139   

AC204414.4 >188018  ctaattatcccactcacaaggtgataagggtgaaaacccttcatcatat-c-ttc-gata 188074 
AC211265.5 >6140    .................................................a.a..tt..a. 6199   

AC204414.4 >188075  agcattttc-tttgaaaactcacacctt-cctcaaatcat 188112 
AC211265.5 >6200    .........t..................t........... 6239   



Events
IdTypeDateWhodidComment
296459InitNoAlign01/15/2014 17:43:47cgi_chen
find_overlapId: find_overlap_app.cpp 404199 2013-06-20 22:08:27Z rafanovi $ built Aug  1 2013. Toolkit wrapper  using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib
Info: Blast Including ID: 545270761
Info: Running Blast Filter: 0
Info: Determined ID: gi|545270761 needs Merging.
Info: Blast Including ID: 545270761
Info: Running Blast Filter: 0
Info: Determined ID: gi|545270761 needs Merging.
Info: Blast Including ID: 545270761
Info: Running Blast Filter: 0
Info: Determined ID: gi|545270761 needs Merging.
Info: Best Rank: -1 in  for 545270761 of 1
Info:  NG returned 0 alignments

tpf_solo for TPF_updated_1_v2
300123ReRunFndOvlp02/11/2014 17:01:38cgi_chen
find_overlapId: find_overlap_app.cpp 404199 2013-06-20 22:08:27Z rafanovi $ built Feb  4 2014. Toolkit wrapper  using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib
Info: Blast Including ID: 545270761
Info: Running Blast Filter: 
Info: CBlastAligner found 3 hits.
Info: Determined ID: gi|545270761 needs Merging.
Info: Merged into 0 alignments.
Info: Blast Including ID: 545270761
Info: Running Blast Filter: 
Info: CBlastAligner found 47 hits.
Info: Determined ID: gi|545270761 needs Merging.
Info: Merged into 40 alignments.
Info: Blast Including ID: 545270761
Info: Running Blast Filter: 
Info: CBlastAligner found 42 hits.
Info: Determined ID: gi|545270761 needs Merging.
Info: Merged into 48 alignments.
Info: Best Rank: 7 in  for 545270761 of 1
Info:  NG returned 4 alignments
Info:  Edge-dup filtered down to 1 alignments
382195CreateSwitchPt12/19/2014 16:01:22chenhc
tpf_m_BuilderId: t Toolkit wrapper version: built Nov 13 2014 using /home/boukn/code/toolkit/c++/GCC481-ReleaseMT64/lib



down arrow BAC Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
CH201-115K4 AC211265.5100%pos 157880 (F+)
CH201-140I23AC204414.499.02%pos 97367 (R+)  
CH201-150P5 AC204414.4100%pos 90185 (F+)
 AC204414.4100%pos 89621 (F+)
CH201-155D8 AC211265.599.26%pos 94680 (F-)
CH201-159I4AC204414.4100%pos 89629 (R+) AC211265.5100%pos 94683 (F-)
AC204414.4100%pos 90193 (R+)  
CH201-174D7AC211265.5100%pos 10636 (R+)  
CH201-17L23AC211265.5100%pos 58379 (R-)  
AC211265.5100%pos 69566 (R-)  
CH201-190F6AC211265.598.45%pos 120855 (R-)  
CH201-193N21AC204414.4100%pos 86083 (R+) AC211265.599.86%pos 94168 (F-)
CH201-19H24AC204414.497.45%pos 88961 (R+)  
CH201-210I13AC211265.599.57%pos 76352 (R-)  
CH201-214K4 AC211265.597.96%pos 58807 (F+)
 AC211265.597.96%pos 69994 (F+)
CH201-229F8AC204414.499.07%pos 97361 (R+)  
CH201-22E2AC204414.499.72%pos 25582 (R+)  
CH201-239E10 AC204414.497.83%pos 89056 (F-)
CH201-23L19 AC211265.5100%pos 10802 (F+)
CH201-246H13AC211265.5100%pos 76352 (R-)  
CH201-248G9 AC211265.599.68%pos 136948 (F+)
CH201-254C9AC204414.499.32%pos 47694 (R+)  
CH201-264B23AC204414.4100%pos 35081 (R+)  
CH201-285A22AC204414.499.11%pos 47330 (R-)  
CH201-286I22AC204414.4100%pos 35031 (R+)  
CH201-315A13AC211265.5100%pos 69283 (R+)  
AC211265.5100%pos 58096 (R+)  
CH201-341P20AC211265.5100%pos 42443 (R+)  
CH201-360E3 AC204414.499.64%pos 49938 (F-)
CH201-368O10AC211265.599.6%pos 96777 (R+)  
CH201-36E9 AC211265.5100%pos 136803 (F+)
 AC211265.599.62%pos 136811 (F+)
CH201-36F14AC211265.599.85%pos 15355 (R-) AC204414.4100%pos 35080 (F+)
CH201-419N12 AC204414.4100%pos 98200 (F+)
CH201-423C2AC211265.5100%pos 70702 (R-) AC204414.499.85%pos 65671 (F+)
CH201-430J18AC211265.5100%pos 36880 (R-)  
CH201-450P6AC211265.5100%pos 113576 (R+)  
CH201-455F21AC211265.5100%pos 133375 (R+)  
AC211265.5100%pos 133602 (R+)  
CH201-481B24 AC204414.4100%pos 170831 (F-)
CH201-482L6AC204414.4100%pos 47482 (R+) AC211265.5100%pos 16860 (F-)
CH201-524P10 AC204414.4100%pos 142817 (F+)
CH201-536A23AC211265.5100%pos 59095 (R+)  
AC211265.5100%pos 70282 (R+)  
AC211265.5100%pos 53027 (R+)  
CH201-554D21AC211265.599.15%pos 92459 (R-)  
CH201-554N3AC211265.5100%pos 92863 (R-)  
CH201-555I18AC204414.499.07%pos 52582 (R-)  
AC204414.4100%pos 52667 (R-)  
CH201-567F3AC211265.5100%pos 88868 (R-)  
CH201-5A24 AC204414.499.29%pos 89046 (F-)
CH201-96F3 AC211265.5100%pos 15251 (F-)
ZMMBBb-127D15AC204414.498.11%pos 21872 (R-)  
ZMMBBb-135N5AC204414.499.36%pos 102366 (R+)  
ZMMBBb-140E24AC211265.597.4%pos 117617 (R-)  
ZMMBBb-146G8 AC204414.498.5%pos 14350 (F+)
ZMMBBb-158C10AC211265.598.5%pos 134781 (R+)  
ZMMBBb-170N18AC211265.599.37%pos 44262 (R+) AC211265.598.04%pos 162016 (F-)
ZMMBBb-175L15 AC211265.599.37%pos 122640 (F+)
ZMMBBb-175N19AC204414.499.85%pos 169351 (R-)  
ZMMBBb-196B16 AC204414.497.88%pos 46104 (F-)
ZMMBBb-196C19 AC211265.599.27%pos 39405 (F+)
ZMMBBb-197B12AC211265.598.25%pos 52470 (R+)  
ZMMBBb-230M15 AC211265.599.2%pos 121096 (F+)
ZMMBBb-260J19 AC211265.598.81%pos 162090 (F-)
ZMMBBb-276H21AC204414.498.76%pos 29946 (R+)  
ZMMBBb-287B13 AC204414.499.56%pos 88483 (F+)
ZMMBBb-334M15AC211265.598.69%pos 14769 (R+) AC211265.598.85%pos 158858 (F-)
ZMMBBb-358B12AC204414.499.36%pos 28281 (R+)  
ZMMBBb-374I15 AC211265.598.49%pos 134743 (F+)
ZMMBBb-382N20 AC204414.499.4%pos 130446 (F-)
ZMMBBb-395N23AC204414.499.48%pos 89053 (R+)  
ZMMBBb-422I9AC211265.5100%pos 74256 (R+)  
ZMMBBb-449L16 AC211265.598.22%pos 136759 (F+)
ZMMBBb-471G8 AC204414.497.24%pos 152101 (F-)
ZMMBBb-514M24AC204414.498.31%pos 102380 (R+)  
ZMMBBb-530P16 AC211265.597.14%pos 115092 (F+)
ZMMBBb-571I9 AC211265.598.66%pos 77643 (F+)
ZMMBBb-579A17AC204414.498.89%pos 131243 (R-)  
ZMMBBb-595F16AC211265.598.16%pos 39225 (R-)  
ZMMBBb-636K18 AC211265.597.68%pos 40156 (F+)

down arrow Fosmid Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
Z_AI-1072G2 AC211265.5100%pos 93306 (F-)
Z_AI-1080E1 AC204414.499.7%pos 176189 (F+)
Z_AI-1133B1 AC204414.4100%pos 138572 (F+)
Z_AI-1210L8 AC211265.5100%pos 155962 (F+)
Z_AI-1234A9AC204414.4100%pos 126591 (R-)  
Z_AI-1237I12AC204414.4100%pos 169397 (R+)  
Z_AI-1238L12AC211265.5100%pos 114295 (R+)  
Z_AI-1242H6AC204414.4100%pos 134797 (R-)  
Z_AI-1270O22AC211265.5100%pos 154891 (R+)  
Z_AI-1323D16 AC204414.4100%pos 88773 (F+)
Z_AI-1342J22AC204414.4100%pos 95622 (R-)  
Z_AI-1367J15 AC211265.5100%pos 4824 (F-)
 AC204414.4100%pos 186703 (F-)
Z_AI-1405O10AC211265.599.57%pos 192093 (R+)  
Z_AI-1420G15AC204414.499.45%pos 67998 (R+) AC204414.499.81%pos 101698 (F-)
Z_AI-1462P1AC204414.4100%pos 135736 (R-)  
Z_AI-17A17 AC204414.499.86%pos 45965 (F+)
Z_AI-260H23 AC211265.599.61%pos 13445 (F+)
Z_AI-289H13AC204414.4100%pos 176071 (R-) AC204414.499.87%pos 141831 (F+)
Z_AI-290M12AC204414.4100%pos 45897 (R+)  
Z_AI-296B10AC204414.499.51%pos 54165 (R+)  
Z_AI-302J13AC211265.5100%pos 38277 (R+) AC211265.5100%pos 76839 (F-)
 AC211265.598.48%pos 38318 (F+)
Z_AI-313I2AC211265.599.76%pos 16407 (R+) AC211265.598.76%pos 70503 (F-)
 AC211265.598.76%pos 59316 (F-)
 AC211265.598.76%pos 53248 (F-)
 AC211265.5100%pos 52936 (F-)
 AC211265.5100%pos 59004 (F-)
 AC211265.5100%pos 70191 (F-)
Z_AI-400L21AC211265.5100%pos 4624 (R-)  
AC204414.4100%pos 186503 (R-)  
Z_AI-441G1 AC204414.499.65%pos 168552 (F+)
Z_AI-445B15 AC204414.499.85%pos 142312 (F-)
Z_AI-479H21 AC204414.499.86%pos 120510 (F-)
Z_AI-531L15 AC211265.5100%pos 54118 (F+)
Z_AI-547M23AC204414.4100%pos 88906 (R+)  
Z_AI-55N12 AC211265.5100%pos 174882 (F+)
Z_AI-595H22AC211265.599.86%pos 112750 (R-) AC211265.599.73%pos 75364 (F+)
Z_AI-59L5AC204414.499.85%pos 72882 (R+)  
Z_AI-607K2AC211265.599.7%pos 179324 (R+)  
Z_AI-628A17AC211265.5100%pos 91597 (R+) AC211265.5100%pos 130628 (F-)
Z_AI-667C13AC204414.499.42%pos 156881 (R-) AC204414.4100%pos 130573 (F+)
Z_AI-667K15 AC204414.4100%pos 49093 (F+)
Z_AI-668C4AC204414.4100%pos 88277 (R-)  
Z_AI-688N1 AC211265.5100%pos 34038 (F-)
Z_AI-719C5 AC211265.5100%pos 191632 (F+)
Z_AI-720H23AC204414.4100%pos 178728 (R-) AC204414.499.84%pos 139217 (F+)
Z_AI-792B14AC211265.5100%pos 135311 (R-) AC211265.5100%pos 96106 (F+)
Z_AI-837E19 AC204414.4100%pos 44950 (F-)
Z_AI-860G17AC211265.5100%pos 127831 (R-) AC211265.5100%pos 95960 (F+)
Z_AI-871O5 AC204414.4100%pos 121647 (F-)
Z_AI-880H8 AC204414.4100%pos 58057 (F-)
 AC204414.4100%pos 58177 (F-)
Z_AI-887I18AC204414.498.98%pos 136633 (R-) AC204414.499.28%pos 111298 (F-)
Z_AI-963I11AC211265.599.78%pos 74504 (R-) AC211265.5100%pos 32936 (F+)
Z_AI-971B16AC204414.4100%pos 77806 (R+)  

down arrow Repeats
acc start stop repeat id strand name family class