Alignment last updated: 01/15/2014 17:13:54
Alignment for AC200137.5 and AC177837.4
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AC200137.5 Zea mays chromosome 1 clone CH201-289B7, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces [htgs_limited_order]
Length: 184,104 bp
AC177837.4 Zea mays chromosome 1 clone CH201-54L9, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces [htgs_limited_order]
Length: 195,531 bp
Alignment Summary
Join evaluation: Alignment count: 1
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Alignment 1 of 1
AC200137.5 : + : 172740..184104 AC177837.4 : + : 1..11364 Mismatches = 0, Gaps = 1, Length = 11365 Percent identity = 100% Score = 2.098e+04 bits (11361), Expect = 0 5 BAC and 1 Fosmid bridging clones. 5 BAC and 0 Fosmid concordant clones. 0 BAC and 1 Fosmid discordant clones. AC200137.5 >172740 gaattcctagccacagggttacatgagctaacgttcaccgaaacagaagcagaagggtga 172799 AC177837.4 >1 ............................................................ 60 AC200137.5 >172800 cctttcgagcgacagctccttgctctggagggagaggacgaggtcgaggtgttcccacgc 172859 AC177837.4 >61 ............................................................ 120 AC200137.5 >172860 gcccttggcgccgccgtcgccgtcgaagcgaagtctagcgaacttgagatcgctcggacc 172919 AC177837.4 >121 ............................................................ 180 AC200137.5 >172920 ctccccttggcaaggctgcgattggttccaccgccgcttcctcgctgcgccgggcctcgc 172979 AC177837.4 >181 ............................................................ 240 AC200137.5 >172980 ggtcgcggcagccgtctccatggcaatggcgtctgtcatgagcggaagtggaggctaggg 173039 AC177837.4 >241 ............................................................ 300 AC200137.5 >173040 ttctgggtttggaggcacgtgctgcctcgcccgtttgatttctccgtgcccgaagacgcg 173099 AC177837.4 >301 ............................................................ 360 AC200137.5 >173100 ccgtgaaaccttcttccgcgtccgaccaatattaataaagcacgaatcttaaagatgtgc 173159 AC177837.4 >361 ............................................................ 420 AC200137.5 >173160 taaccagactgaccgaccgagtcaccgtcacggtcaccgcggccccagcccaacccagag 173219 AC177837.4 >421 ............................................................ 480 AC200137.5 >173220 cattcttggtcccgatttcctcagctcaggtgccgggttccccaggcacaagctacaaac 173279 AC177837.4 >481 ............................................................ 540 AC200137.5 >173280 cctaacccatccgggagcaccggaaattttggaggctgaaacggaaaggggagaaggcga 173339 AC177837.4 >541 ............................................................ 600 AC200137.5 >173340 tgacgacgagggagccgcgcgaggcgtcccggcgcgatgggcgcgactcgcacgggaggc 173399 AC177837.4 >601 ............................................................ 660 AC200137.5 >173400 gcccccactcctcgttcaggtcgcggagggacgatcccaggtaccaatccgctgcatccc 173459 AC177837.4 >661 ............................................................ 720 AC200137.5 >173460 ccgtcggatttccgatctgactgcgttttagtatggattagaatgctggttttagcgggc 173519 AC177837.4 >721 ............................................................ 780 AC200137.5 >173520 atcggtggttctttcttgaacctgcagtttcttacaagatacaatttttcgaatctcttt 173579 AC177837.4 >781 ............................................................ 840 AC200137.5 >173580 tggtagcccaaggagaagagatgacaggaggcgtgaatcggacagggcgcaccacagaag 173639 AC177837.4 >841 ............................................................ 900 AC200137.5 >173640 tcgagatggagaatttttggaggtggtggaccatgatcagaagcggaatagagatgctgc 173699 AC177837.4 >901 ............................................................ 960 AC200137.5 >173700 gcagagcgctgaccctccgaatgctgagtcgaagtcagcgagtgatatgaagaatggccc 173759 AC177837.4 >961 ............................................................ 1020 AC200137.5 >173760 ctccaccaggcatgagagatcacctaggggaaccaaacgattttctgagtcgagtgaggc 173819 AC177837.4 >1021 ............................................................ 1080 AC200137.5 >173820 atggcggcctcggtctttctttcaggttcttatcttttctcagtgtattatatcaaaagg 173879 AC177837.4 >1081 ............................................................ 1140 AC200137.5 >173880 gaataccaccaatagcttctgctctctattacaaattgtttcatcatagctacaaatagt 173939 AC177837.4 >1141 ............................................................ 1200 AC200137.5 >173940 gtgctttgactatcacggttacatacatatgtgctcacgatgttacagagctcactattt 173999 AC177837.4 >1201 ............................................................ 1260 AC200137.5 >174000 tggatagctaatagtaatatagtattttatggagttgctattttagatagccgaacagca 174059 AC177837.4 >1261 ............................................................ 1320 AC200137.5 >174060 agtattccacattcggtaacttcaccggtactggaaaatgtacctaacagattagtgtta 174119 AC177837.4 >1321 ............................................................ 1380 AC200137.5 >174120 ttaggtggatccataggtcattatttgcttgtggtctggattgcaaacatcctggttatg 174179 AC177837.4 >1381 ............................................................ 1440 AC200137.5 >174180 acagctctggtaactaatgcaattgtgccgagtgttgtctaataacaaatattgtgttga 174239 AC177837.4 >1441 ............................................................ 1500 AC200137.5 >174240 tagtagagacatttaatgtgcccaaaacattataagtattccatgtttgtgttattctga 174299 AC177837.4 >1501 ............................................................ 1560 AC200137.5 >174300 ataaatgctatatatttattttaagactcacggttaaaggacttctgagtcgtatgttaa 174359 AC177837.4 >1561 ............................................................ 1620 AC200137.5 >174360 gaggctctggagtgcatatgatttttttaggatttgtgttatcctatgtagaatgtagaa 174419 AC177837.4 >1621 ............................................................ 1680 AC200137.5 >174420 accgatatttgagataatcagctcaaattagtacctataggttcgttttcacccatgttt 174479 AC177837.4 >1681 ............................................................ 1740 AC200137.5 >174480 agctcaaatattcattagctatcctctgtttgtgattatgtgtgaaccactgaacctgtc 174539 AC177837.4 >1741 ............................................................ 1800 AC200137.5 >174540 gttgcatttctgttatttaagttcatgaaatgtagttttagtgtacagattagttagatt 174599 AC177837.4 >1801 ............................................................ 1860 AC200137.5 >174600 catggatatggtttgccagctttggttaacatgaatatacttgtcttaattaatggttgc 174659 AC177837.4 >1861 ............................................................ 1920 AC200137.5 >174660 aagtaacaactctaacattcatatgcatcttttgtagaatcatctgaagtgtggaggttg 174719 AC177837.4 >1921 ............................................................ 1980 AC200137.5 >174720 gtctctgcataaagaatgttaggtcattgttaaatcatacaaaaattcttccacttgtcg 174779 AC177837.4 >1981 ............................................................ 2040 AC200137.5 >174780 tacatacataacacattcctcctgatgtagtgggacttcttttatgacacattgattcaa 174839 AC177837.4 >2041 ............................................................ 2100 AC200137.5 >174840 atgcccactgtttgtaacaatgttagactacctgtgcttctatgtacagcacaatgagcg 174899 AC177837.4 >2101 ............................................................ 2160 AC200137.5 >174900 tggaagtgctgggcaaggtggtcggcattatgaccgccaggctagtggtgagatgccttc 174959 AC177837.4 >2161 ............................................................ 2220 AC200137.5 >174960 ttagtttgtattttgtgcatttatttaattatccattctctatacatgctaagttattta 175019 AC177837.4 >2221 ............................................................ 2280 AC200137.5 >175020 ttgtttctaagactatggaaggcaaagggagcatctctctgatagagataaacagaagac 175079 AC177837.4 >2281 ............................................................ 2340 AC200137.5 >175080 agagagacacagtttgcagggaaagattgagctggaccagcaaaagaaggatggtgattc 175139 AC177837.4 >2341 ............................................................ 2400 AC200137.5 >175140 aacatggaagcatgatggatttttccagttggaggaagcagcaccccttgccaagaagag 175199 AC177837.4 >2401 ............................................................ 2460 AC200137.5 >175200 gccaccatttcaggagatgaagatacaagaatctgctgacactgtaacagaaccagattc 175259 AC177837.4 >2461 ............................................................ 2520 AC200137.5 >175260 tagatcaaggaattatcaggcacggggatatggaaatcatcgacccttcctaaggccaga 175319 AC177837.4 >2521 ............................................................ 2580 AC200137.5 >175320 tgatcgaggctttagaagggggtttcctgaccacaggagtgatggccagaggaatgggca 175379 AC177837.4 >2581 ............................................................ 2640 AC200137.5 >175380 tgatataaggggaagattttctgttaggggaggaatggacagagacaggtttaacaattc 175439 AC177837.4 >2641 ............................................................ 2700 AC200137.5 >175440 atatggtgggagaagcaacgcagagcaggcttctggtgatcaagaagaaaaatggaagca 175499 AC177837.4 >2701 ............................................................ 2760 AC200137.5 >175500 tgacctctatgatcagacaaacaggagcccgcctccaaagactgaggaagagcagattgc 175559 AC177837.4 >2761 ............................................................ 2820 AC200137.5 >175560 caaagttgaagcgctgttggcactgtagctgtcttatttatgtctggagttgttttttgt 175619 AC177837.4 >2821 ............................................................ 2880 AC200137.5 >175620 gatagattatcatgtacttggtttcagatgtgttgaatactgtcttttttattctatata 175679 AC177837.4 >2881 ............................................................ 2940 AC200137.5 >175680 ttctgcatatctatgtggaattgtggattaaaccaccttatgaagctattccatttggac 175739 AC177837.4 >2941 ............................................................ 3000 AC200137.5 >175740 tgataatattgtactagataatcatgagtttcataatgtagaaccatcaagcgaagtaca 175799 AC177837.4 >3001 ............................................................ 3060 AC200137.5 >175800 agacaatcatgagtttggtaggtaaacaatttgctcctcgggtgcgtttagagctaaatt 175859 AC177837.4 >3061 ............................................................ 3120 AC200137.5 >175860 gcttctttaggtagtgtttggttcttcccgatctgttgtttgtatatgtttcatatagta 175919 AC177837.4 >3121 ............................................................ 3180 AC200137.5 >175920 tataggggctctaaaaaggaaaattatgcttaatggtgtgtttgatttggcttttgtcct 175979 AC177837.4 >3181 ............................................................ 3240 AC200137.5 >175980 ctaaaagtcaaaagccaaaccaaaggattggaatcaggaagtaactttttctaaaagctg 176039 AC177837.4 >3241 ............................................................ 3300 AC200137.5 >176040 actttgtaaaattgaaagcacttcttaatctgcttttagtggcttttgaatgaaacttta 176099 AC177837.4 >3301 ............................................................ 3360 AC200137.5 >176100 aaaatatatatcgaaaaccttttgacggctttttgtggtttgcactaaacggtttttagc 176159 AC177837.4 >3361 ............................................................ 3420 AC200137.5 >176160 attttaacagctcacagcccacagcgattttttccacagcccacagcgacttttttcaca 176219 AC177837.4 >3421 ............................................................ 3480 AC200137.5 >176220 gctcacagtccacagcatcttttttcacagtcacggcctaaccaaatagaccctaaatat 176279 AC177837.4 >3481 ............................................................ 3540 AC200137.5 >176280 tgaaccatcggctctccaaaatcttccagacgaagccactttctaaacatgaagctgctc 176339 AC177837.4 >3541 ............................................................ 3600 AC200137.5 >176340 tatccgaatcgactttgaaaccaaacatctttctcgactccttttaacctggtgcttggt 176399 AC177837.4 >3601 ............................................................ 3660 AC200137.5 >176400 tctaggactaaagtttagcacatgtcacatcaaatatttgaatgcacatgtcctattcgg 176459 AC177837.4 >3661 ............................................................ 3720 AC200137.5 >176460 tgagtgaatttaattagaaagaaacaagatcgattagaaaaagaagaggagaagcgaccc 176519 AC177837.4 >3721 ............................................................ 3780 AC200137.5 >176520 cgtccctggcctcagcgcgcctcggcccagctgccccctttccccctgcgcgcccaaccg 176579 AC177837.4 >3781 ............................................................ 3840 AC200137.5 >176580 cctcccactcctctctcccgcgcacccatgatataggaagagagaaaccactcctctccc 176639 AC177837.4 >3841 ............................................................ 3900 AC200137.5 >176640 tcttcctcgacctcctcctttggacaaatgagctcttatttgctatgctagtggagcatg 176699 AC177837.4 >3901 ............................................................ 3960 AC200137.5 >176700 tttgcttctatccggtctatttaattcaacaactagttgtacaataagataatgtgtact 176759 AC177837.4 >3961 ............................................................ 4020 AC200137.5 >176760 ttaatttagcctttgtttcaatttggatgtaataagacaacatgttagtggtttgtgtga 176819 AC177837.4 >4021 ............................................................ 4080 AC200137.5 >176820 actatttgttgtatgttctaatggagcactgaactattgttgtttgtgaaatgaattttt 176879 AC177837.4 >4081 ............................................................ 4140 AC200137.5 >176880 gtgaactgatgaaggtcgaccttgctgtcatgcagcacctaggcctagcatggataattt 176939 AC177837.4 >4141 ............................................................ 4200 AC200137.5 >176940 gttttgcaaaagtcttacttaacttgtagcatatatcacatactatgcaatagaagcaac 176999 AC177837.4 >4201 ............................................................ 4260 AC200137.5 >177000 aactagaagtgccaacaaataccacatacaatcttggtaaatacttgccaacacatatca 177059 AC177837.4 >4261 ............................................................ 4320 AC200137.5 >177060 cacactacgcaacaaaagtagatacttcaagtgacaacaaatatcacatacaacctgcaa 177119 AC177837.4 >4321 ............................................................ 4380 AC200137.5 >177120 acataattcacacactttgccatagcttcaagttatcacataaataatttttaggaggta 177179 AC177837.4 >4381 ............................................................ 4440 AC200137.5 >177180 caaactccacaacatgttcacatggcactggctactcatgtacaccacacataactgcat 177239 AC177837.4 >4441 ............................................................ 4500 AC200137.5 >177240 atcaaattgaactagacttggttaatacttggtaactacttggtaggtaccacattcaac 177299 AC177837.4 >4501 ............................................................ 4560 AC200137.5 >177300 acaataaactggtactgtatacactcctattcgacaacctaaagctaactgttgtactcc 177359 AC177837.4 >4561 ............................................................ 4620 AC200137.5 >177360 tacttgtaggcccattagaagtgtgtgtcaaacttgaacaaaccggtatacacttttcca 177419 AC177837.4 >4621 ............................................................ 4680 AC200137.5 >177420 aggtgtcggcgtctcgagaccggggggtccctaagccgacgagtgagtgtgccgcgtgcc 177479 AC177837.4 >4681 ............................................................ 4740 AC200137.5 >177480 ccagcccagatgggtcgagcgcgtgggcgagcgcgaaggggggaagcgaggcggccggag 177539 AC177837.4 >4741 ............................................................ 4800 AC200137.5 >177540 acgggcgtgagagaggtggaaatcccgcggccttcgtgttcgtcccgcgcccaggtcggg 177599 AC177837.4 >4801 ............................................................ 4860 AC200137.5 >177600 tgcgcttgcagtagggggttacaagcgtccacgcgggtgagggaagcgagcggccccaag 177659 AC177837.4 >4861 ............................................................ 4920 AC200137.5 >177660 agagcgcctgtcccgtcctcgtccccgcgcggccaaccttctccaagaaggccctggtcc 177719 AC177837.4 >4921 ............................................................ 4980 AC200137.5 >177720 ttccttttataggcgtaaggagaggatccaggtgtacaatgggggtgtagcagagtgcta 177779 AC177837.4 >4981 ............................................................ 5040 AC200137.5 >177780 cgtgtctagcggggggagagctagcgccctaagtacatgccaatgtggcagccggagaga 177839 AC177837.4 >5041 ............................................................ 5100 AC200137.5 >177840 tcttggcaccctgctggtgtgatgtcgtggctgtcggaggagcaacggagcctggcggag 177899 AC177837.4 >5101 ............................................................ 5160 AC200137.5 >177900 ggacagctgtcggagcggttgagtccttgctgacgtccccctgcttccgtaagggagctg 177959 AC177837.4 >5161 ............................................................ 5220 AC200137.5 >177960 agagccaccgtcgtcacagggctagcggggcgccatcatttcctatctggcggagctagc 178019 AC177837.4 >5221 ............................................................ 5280 AC200137.5 >178020 cagatgggacaccggtcttgttctctgcggcccgagtcggctcggggtagggtgatgatg 178079 AC177837.4 >5281 ............................................................ 5340 AC200137.5 >178080 gcgcttcctgttgacgtggcgggcctgtgtcctaggtcgggcgacgtggaggctcctccg 178139 AC177837.4 >5341 ............................................................ 5400 AC200137.5 >178140 aagccgaggtcgagtctgtcttccatggccgaggccgagcccgagctcctgggtcgggcg 178199 AC177837.4 >5401 ............................................................ 5460 AC200137.5 >178200 aggcggaggtcgttcggtagaggccagggcggagtccgagccctggggtcgggcgaagcg 178259 AC177837.4 >5461 ............................................................ 5520 AC200137.5 >178260 gagttcgtcgtcttctggggctgagcccgagtccgagccctgggtcgggcggagcggagt 178319 AC177837.4 >5521 ............................................................ 5580 AC200137.5 >178320 tcgccgtcttccggggcctagcccgagtctgagccctgggtcgggcggagcggagttcgc 178379 AC177837.4 >5581 ............................................................ 5640 AC200137.5 >178380 cgtcttccggggcctagcccgagtccgagccctgggtcgggcggagcggagttcgccgtc 178439 AC177837.4 >5641 ............................................................ 5700 AC200137.5 >178440 ttccggggcctagcccgagtccgagccctgggtcgggcggagcggagttcgccgtcttcc 178499 AC177837.4 >5701 ............................................................ 5760 AC200137.5 >178500 ggggcctagcccgagtccgagccctgggtcgggcggagcggagtttcctatggcgccttt 178559 AC177837.4 >5761 ............................................................ 5820 AC200137.5 >178560 ggcaaggcctgactgcctgtcagtctcactctgtcaagcggcactgcagtcggagtggcg 178619 AC177837.4 >5821 ............................................................ 5880 AC200137.5 >178620 caggcggcgctgtccttctgtcagaccggtcagtggagcggcgaagtgacggcggtcact 178679 AC177837.4 >5881 ............................................................ 5940 AC200137.5 >178680 tcggctctgccggggggcgcgcgtcaggataaaggtgtcaggctacctttgcgttaaatg 178739 AC177837.4 >5941 ............................................................ 6000 AC200137.5 >178740 ctcctgcgactcggtcggtcggcgcggcgatttgatcagggttgcttcttagcgaaggca 178799 AC177837.4 >6001 ............................................................ 6060 AC200137.5 >178800 aggcctcgggcgagccggagatgtatccgccgttaaaggggggcctcgggcgagacggaa 178859 AC177837.4 >6061 ............................................................ 6120 AC200137.5 >178860 acccctcggggtcggctgcccttgcccgaggctaggctcgggcgaggcgtgatcgagtcg 178919 AC177837.4 >6121 ............................................................ 6180 AC200137.5 >178920 ctcgtatggactgatccctgacttaatcgcacccatcaggcctctgcagctttatgctga 178979 AC177837.4 >6181 ............................................................ 6240 AC200137.5 >178980 tgggggttaccagctgagaattaggcgtattgagggtacccctaattatggtccccgaca 179039 AC177837.4 >6241 ............................................................ 6300 AC200137.5 >179040 gtagcccccgagcctcgaagggagtgttagcacttgcttggaggctttcgtcgcactttt 179099 AC177837.4 >6301 ............................................................ 6360 AC200137.5 >179100 ttgcaaggggaccagcctttctcggttgcattttgttccggtgggtgcgcgcgagcgcac 179159 AC177837.4 >6361 ............................................................ 6420 AC200137.5 >179160 ccgccgggtgtagcccccgaggcctcggaggagtggtttcactcccccgaggtcttaatg 179219 AC177837.4 >6421 ............................................................ 6480 AC200137.5 >179220 ccttgcgtaatgcctcggctggtctggttgttccctcatgcgaactggccgtagcccggg 179279 AC177837.4 >6481 ............................................................ 6540 AC200137.5 >179280 tgcacggtcggggcccaagttctcgggctggtatgttgatgctgtcaacggtttgggcgg 179339 AC177837.4 >6541 ............................................................ 6600 AC200137.5 >179340 agccgggtttgcgagagcagcccccgagcctccgcacagggcgagagggcgatcagggac 179399 AC177837.4 >6601 ............................................................ 6660 AC200137.5 >179400 agactcggcttttttacatatgcccctacgtcgcctttccgcaaggaggaggggggagag 179459 AC177837.4 >6661 ............................................................ 6720 AC200137.5 >179460 cgccatgttaccctcgatgggcaccgaacatggtgtctccggtgagctgcaagcgggtaa 179519 AC177837.4 >6721 ............................................................ 6780 AC200137.5 >179520 tccgagtggacgtccgtgccccgttcgttgggggtcggctaggggcccagaggcacgccc 179579 AC177837.4 >6781 ............................................................ 6840 AC200137.5 >179580 aaaagtacctgcgggtgatctgccggacccggtcccctggcgacggggtccgagggctcg 179639 AC177837.4 >6841 ............................................................ 6900 AC200137.5 >179640 atgcctccctccgttgggattccgttacaagatcgctcccgctggtctcggaaatgtcct 179699 AC177837.4 >6901 ............................................................ 6960 AC200137.5 >179700 agggtacctcgggagcgcagcccgagccttggttatgtatcgaacgtacccctggtcatc 179759 AC177837.4 >6961 ............................................................ 7020 AC200137.5 >179760 cctcgctcggcgtctgaggcgactgtgaacccttcgggggccagccttcgaacccctgat 179819 AC177837.4 >7021 ............................................................ 7080 AC200137.5 >179820 cagtaatgggcgcggagcccgagtagcttgaggcggccgtggagcccttcggggggccgg 179879 AC177837.4 >7081 ............................................................ 7140 AC200137.5 >179880 ccttcgaacctttgaccagtagtgggtgtagggcccacgcgatctgaggcgactgttgaa 179939 AC177837.4 >7141 ............................................................ 7200 AC200137.5 >179940 cccctcggagggccagccttcgaacctctgatcagtaggggggctcggagcccggttcct 179999 AC177837.4 >7201 ............................................................ 7260 AC200137.5 >180000 tcacagggaaggatccttttcggggtattcccctttcccggtccctgttgcaagagatag 180059 AC177837.4 >7261 ............................................................ 7320 AC200137.5 >180060 agaaagaggaaaaaaggaaaaggatacgaaatcgaacgacgtggcgtaccttttttgacg 180119 AC177837.4 >7321 ............................................................ 7380 AC200137.5 >180120 cggttattacggcgaaggcgaagcgtcgcccgcttctcctgccagaagcgtcgcctgtcc 180179 AC177837.4 >7381 ............................................................ 7440 AC200137.5 >180180 cgccgcggagttaatgcgacggggtgagttgttggcagggcggccgttgcgcgtgcgcga 180239 AC177837.4 >7441 ............................................................ 7500 AC200137.5 >180240 gccgttggaggaacggatcacgggcgccctgtcttcacgctgtgagagtgggttctcttg 180299 AC177837.4 >7501 ............................................................ 7560 AC200137.5 >180300 ctgcccccggacgggacgtgagtctggccgacgacgtgaccactgctcccgcccgcctgc 180359 AC177837.4 >7561 ............................................................ 7620 AC200137.5 >180360 caccgtcattactgccggcccactttcggtcgtattgaccgtcgcgccaggctggcgttg 180419 AC177837.4 >7621 ............................................................ 7680 AC200137.5 >180420 ctgggtcgtgcgctgggccgcctcgagtcgcggtattggttccgcaaccgaagaggcgcg 180479 AC177837.4 >7681 ............................................................ 7740 AC200137.5 >180480 gtggtggcgcaagtggcggtgcagttgcttgcatgcagcatctggcacgccggttgcgtg 180539 AC177837.4 >7741 ............................................................ 7800 AC200137.5 >180540 acgcgtgggcctgggcctccatgccggcgcgttgggagtcggagaagcgcgtccacctgg 180599 AC177837.4 >7801 ............................................................ 7860 AC200137.5 >180600 cgcggttgcatgccgcctgcatgactgcccgccccttccgcccgttggtctgggcaaaag 180659 AC177837.4 >7861 ............................................................ 7920 AC200137.5 >180660 tgggggtcgttgtcgtcgtagtcagagcgggcggcggcgagccgctcgtcagtcttctgt 180719 AC177837.4 >7921 ............................................................ 7980 AC200137.5 >180720 tgctccgcaggccttcccccatggagtggggttgttcgtacctgcggagggggaaccgga 180779 AC177837.4 >7981 ............................................................ 8040 AC200137.5 >180780 gttccatttgtaatggcactttgtgtcggtatttttgttcattgtggccgtcgaggcctg 180839 AC177837.4 >8041 ............................................................ 8100 AC200137.5 >180840 aacatgtatgtaattttggcacagagccgtgttttttcctcatttttgagcactaagact 180899 AC177837.4 >8101 ............................................................ 8160 AC200137.5 >180900 cgcctgtcgattatctgaatcgcttcaccaagcatgagtcgccccatgtcaaggtgacga 180959 AC177837.4 >8161 ............................................................ 8220 AC200137.5 >180960 gtgaggtatccgtatcccggaggcgtaggagtccctcggctcgatcgtccttgttgtctg 181019 AC177837.4 >8221 ............................................................ 8280 AC200137.5 >181020 aggctcctctagcttagttaaagagaccccttggctgctcttcgacgagccgaggccagg 181079 AC177837.4 >8281 ............................................................ 8340 AC200137.5 >181080 ggtagcgatatcaacacgaacagaggcggagttggcttgaaaaatgaagacctggttggc 181139 AC177837.4 >8341 ............................................................ 8400 AC200137.5 >181140 cggagcctagccgggttgtccgtcagcgggaccgatgccggagttgatcagccgaggcct 181199 AC177837.4 >8401 ............................................................ 8460 AC200137.5 >181200 caggggcaaccggccgagccgcctgctcgggccggattcccggagaagtccctggcagcg 181259 AC177837.4 >8461 ............................................................ 8520 AC200137.5 >181260 attgcccgggcgtggtgatgacgtcgtccttcggagcggagatcctcggaccgcgtcgcc 181319 AC177837.4 >8521 ............................................................ 8580 AC200137.5 >181320 gttcgaggctgggtcggacctcgctgaaggtatcgtcgatgccgagggtgctacagctcc 181379 AC177837.4 >8581 ............................................................ 8640 AC200137.5 >181380 cttccagcgtgaagacccgagcctgcaggatcagattgtcttgtagcgtgtgccttctgc 181439 AC177837.4 >8641 ............................................................ 8700 AC200137.5 >181440 agccgccgaggccagaatacacgccctcgctgtgttgtaaagctgcgtctcctttcctct 181499 AC177837.4 >8701 ............................................................ 8760 AC200137.5 >181500 tgtttcgagtatctggactttttgtcggtaacatggatgtttgtgtgagcgggagttgct 181559 AC177837.4 >8761 ............................................................ 8820 AC200137.5 >181560 tctcgcgggaggtgatgagtgaggtatccgtatcccggaggcgtgggagtccctcggctc 181619 AC177837.4 >8821 ............................................................ 8880 AC200137.5 >181620 ggtcggccttgccgcttacgcgtactttcacccgtccatgaggccctgtcaccgactcgg 181679 AC177837.4 >8881 ............................................................ 8940 AC200137.5 >181680 tcgagaaggctcgaaggatcgctttggcataagggcttccgaacgtaaagacttgttcga 181739 AC177837.4 >8941 ............................................................ 9000 AC200137.5 >181740 tccgcggagtcactttatccgaacgcgagttacttatcgcagaaggtgatgagtgaggta 181799 AC177837.4 >9001 ............................................................ 9060 AC200137.5 >181800 tccgtatcccggaggcgtaggagtccctcggctcggtcagccttggctgcttacgtgtac 181859 AC177837.4 >9061 ............................................................ 9120 AC200137.5 >181860 tccgtcgtttccaggacccacttttcgaagtagccaaaaagcacggaagatattctggta 181919 AC177837.4 >9121 ............................................................ 9180 AC200137.5 >181920 aaagagatcttttttcgaggaaaattttgacgcagagggggtttccccccttttagcccc 181979 AC177837.4 >9181 ............................................................ 9240 AC200137.5 >181980 cgagggagggtcgggctttgccgaggcgaggccgacccttccttgttgactaaactttgc 182039 AC177837.4 >9241 ............................................................ 9300 AC200137.5 >182040 gtgggtgcgaggtatatgaacaacttgaaaacatcttaagggtagaagcgacatagctgt 182099 AC177837.4 >9301 ............................................................ 9360 AC200137.5 >182100 tggatgttccaagcgttgtcgtagacctcgccttgactgtttgccagcttgtacgttccg 182159 AC177837.4 >9361 ............................................................ 9420 AC200137.5 >182160 ggcttcagaactttggcgatgacgaatggcccctcccaggggggcgtgagcttgtgcctc 182219 AC177837.4 >9421 ............................................................ 9480 AC200137.5 >182220 cctcgggtgtcttgccgcagccgaagtaccaggttgcccacctggaggtcccggggtcgg 182279 AC177837.4 >9481 ............................................................ 9540 AC200137.5 >182280 acccctcgggcgtggtagcgtcgcagggattgctgataccgcgccgagtgtagtaaggcc 182339 AC177837.4 >9541 ............................................................ 9600 AC200137.5 >182340 ctgtcccaagcctcttccaactggtccagcgagtcttctcggctagcttggttgctttga 182399 AC177837.4 >9601 ............................................................ 9660 AC200137.5 >182400 tcgtcgtaggccctcgtcctcgggggagccgtattccaggtcagtgggcaagacggcctc 182459 AC177837.4 >9661 .....................-...................................... 9719 AC200137.5 >182460 ggccccgtagaccaggaagaacagcgtgaaacccgtggctcggctcggcgttgtcctcag 182519 AC177837.4 >9720 ............................................................ 9779 AC200137.5 >182520 gctccagaccaccgaggggagttccttcatccatcgcttgccgaacttgttgaggtcgtt 182579 AC177837.4 >9780 ............................................................ 9839 AC200137.5 >182580 gtaaatccgaggcttgagcccttgtagaatcatgccattggcacgctctacttgcccatt 182639 AC177837.4 >9840 ............................................................ 9899 AC200137.5 >182640 cgacatgggatgagccacggcggcccagtccacccggatgtggtgatcctcgcaaaaatc 182699 AC177837.4 >9900 ............................................................ 9959 AC200137.5 >182700 caagaattttctgccggtgaactgggtgccgttgtcggtgatgatggagtttgggacccc 182759 AC177837.4 >9960 ............................................................ 10019 AC200137.5 >182760 gaagtgatggatgatgttggtgaagaacgccaccgcctgctcggacctgatgctgttcag 182819 AC177837.4 >10020 ............................................................ 10079 AC200137.5 >182820 gggtcggacctcgatccacttggagaatttgtcgatggtgaccagcaggtgcgtgtagcc 182879 AC177837.4 >10080 ............................................................ 10139 AC200137.5 >182880 cccgggcaccttctgcaagggaccgacgaggtccagaccccacacagcaaagggccaggt 182939 AC177837.4 >10140 ............................................................ 10199 AC200137.5 >182940 gatgggtatcgtctgcagagcctgagcgggcaggtgggtctgcttcgcatagaattggca 182999 AC177837.4 >10200 ............................................................ 10259 AC200137.5 >183000 cccttcgcaggtgcggacaattctagtggcgtcagccaccgtcgtcggccagtagaagcc 183059 AC177837.4 >10260 ............................................................ 10319 AC200137.5 >183060 ttgccggaaagcattcccgacgagggctcgaggcgctgcatgatggccgcaagcccccaa 183119 AC177837.4 >10320 ............................................................ 10379 AC200137.5 >183120 gtgtatttcttgcaggagttcctgaccttcggcgatggagatgcaccgctggaggatgcc 183179 AC177837.4 >10380 ............................................................ 10439 AC200137.5 >183180 cgaggggctgcggtggtagagctccttctcatcgcccagcaagacgaacgacttggcgcg 183239 AC177837.4 >10440 ............................................................ 10499 AC200137.5 >183240 tcgcgctacccgccgagcctcggcttggtcgaggggtagctctccttggcggagatattg 183299 AC177837.4 >10500 ............................................................ 10559 AC200137.5 >183300 caggtactgggtctgccaatctcgatcaggcgtggccccgctccgctcctcctcgatgcg 183359 AC177837.4 >10560 ............................................................ 10619 AC200137.5 >183360 cagcgcctcgccctcgggggccgagggtacctcgggctgaaccgaggacgcctcgggctg 183419 AC177837.4 >10620 ............................................................ 10679 AC200137.5 >183420 ggccgagggtacctcaggctgggccgagggtacctcgggctggaccgagggtgcctcggg 183479 AC177837.4 >10680 ............................................................ 10739 AC200137.5 >183480 ctcgggcgtgtcgttgatcttgacggagggttgatgcggatcctgggagaagacgtccgg 183539 AC177837.4 >10740 ............................................................ 10799 AC200137.5 >183540 gggaaccgtcgttcgccccgaggctatttttgccagctcgtccgcagtctcattgtagcg 183599 AC177837.4 >10800 ............................................................ 10859 AC200137.5 >183600 ctgagcgatgtggttaagctcgagcccgtagaacttgtcttccaggcgccgaacctcatc 183659 AC177837.4 >10860 ............................................................ 10919 AC200137.5 >183660 gcagtaggcctccatcttcgggtcgcggcagtgggagttcttcatgacttggtcgatgac 183719 AC177837.4 >10920 ............................................................ 10979 AC200137.5 >183720 gagctgcgagtcaccgcgggcgtcgaggcgtctgacccctagcttgatggcgatccgcaa 183779 AC177837.4 >10980 ............................................................ 11039 AC200137.5 >183780 cccgttgaccagagcctcgtactcagccacattgttggacgccgggaaatggaggcgtag 183839 AC177837.4 >11040 ............................................................ 11099 AC200137.5 >183840 cacgtagcgtaggtgcttcccgaggggcgagatgaagagcaggcccgcgccggctcccgt 183899 AC177837.4 >11100 ............................................................ 11159 AC200137.5 >183900 cttcatcagcgacccgtcgaaaaacatggtccagagctccggttggatcggagccgtcgg 183959 AC177837.4 >11160 ............................................................ 11219 AC200137.5 >183960 cagctgggtgtcgacccattcggctacgaagtccgccaatacctgggacttgatggcctt 184019 AC177837.4 >11220 ............................................................ 11279 AC200137.5 >184020 ccgaggggcgaacgagattgtctcgcccatgatttccaccacccactttgcgatactgcc 184079 AC177837.4 >11280 ............................................................ 11339 AC200137.5 >184080 cgaggcctctcggcactggatgatc 184104 AC177837.4 >11340 ......................... 11364
Events
Id | Type | Date | Whodid | Comment |
295010 | InitHasAlign | 01/15/2014 17:13:54 | cgi_chen | find_overlapId: find_overlap_app.cpp 404199 2013-06-20 22:08:27Z rafanovi $ built Aug 1 2013. Toolkit wrapper using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib Info: Blast Including ID: 545481138 Info: Running Blast Filter: 0 Info: Determined ID: gi|545481138 needs Merging. Info: Blast Warning: Empty Query Set Info: Determined ID: gi|545481138 needs Merging. Info: Blast Warning: Empty Query Set Info: Determined ID: gi|545481138 needs Merging. Info: Best Rank: 0 in for 545481138 of 1 Info: NG returned 1 alignments tpf_solo for TPF_updated_1_v2 |
BAC Ends
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
CH201-102C16 | AC177837.4 | 99.74% | pos 74892 (R-) | |||
CH201-113E21 | AC177837.4 | 99.06% | pos 92756 (F-) | |||
CH201-15O20 | AC177837.4 | 100% | pos 103582 (F+) | |||
CH201-179N12 | AC177837.4 | 98.8% | pos 260 (R+) | |||
AC200137.5 | 98.8% | pos 172999 (R+) | ||||
CH201-191E5 | AC177837.4 | 100% | pos 108069 (F+) | |||
CH201-22A18 | AC177837.4 | 100% | pos 75369 (F-) | |||
AC177837.4 | 100% | pos 74891 (F-) | ||||
CH201-253E8 | AC177837.4 | 100% | pos 130167 (R-) | |||
AC177837.4 | 99.51% | pos 129901 (R-) | ||||
CH201-262F22 | AC177837.4 | 100% | pos 92693 (F+) | |||
CH201-264I19 | AC177837.4 | 100% | pos 92842 (F+) | |||
CH201-268K5 | AC177837.4 | 99.63% | pos 92278 (F-) | |||
CH201-28O1 | AC200137.5 | 99.84% | pos 166080 (F-) | |||
CH201-387K3 | AC200137.5 | 99.44% | pos 125794 (F+) | |||
CH201-401J1 | AC177837.4 | 99.22% | pos 82981 (F-) | |||
CH201-401L5 | AC177837.4 | 99.59% | pos 82442 (F-) | |||
AC177837.4 | 100% | pos 82888 (F-) | ||||
CH201-408B19 | AC200137.5 | 100% | pos 50501 (R-) | |||
CH201-410O16 | AC177837.4 | 100% | pos 90822 (R+) | |||
CH201-433G5 | AC200137.5 | 100% | pos 40933 (R-) | |||
CH201-445N19 | AC177837.4 | 99.85% | pos 39037 (F+) | |||
AC177837.4 | 99.85% | pos 47065 (F+) | ||||
CH201-454K10 | AC177837.4 | 100% | pos 93810 (R+) | |||
CH201-488L1 | AC177837.4 | 100% | pos 41230 (R-) | |||
AC177837.4 | 100% | pos 29386 (R+) | ||||
AC177837.4 | 100% | pos 49258 (R-) | ||||
CH201-515H6 | AC177837.4 | 100% | pos 29388 (R+) | |||
AC177837.4 | 100% | pos 41231 (R-) | ||||
AC177837.4 | 100% | pos 49259 (R-) | ||||
CH201-529H10 | AC177837.4 | 100% | pos 184343 (F+) | |||
AC177837.4 | 100% | pos 184370 (F+) | ||||
AC177837.4 | 98.8% | pos 184396 (F+) | ||||
CH201-535P15 | AC177837.4 | 100% | pos 71285 (F+) | |||
AC177837.4 | 100% | pos 73025 (F+) | ||||
CH201-54L9 | AC200137.5 | 99.85% | pos 172857 (F+) | |||
AC200137.5 | 100% | pos 172766 (F+) | ||||
AC177837.4 | 99.85% | pos 118 (F+) | ||||
AC177837.4 | 100% | pos 27 (F+) | ||||
CH201-566G16 | AC177837.4 | 99.77% | pos 134673 (F-) | |||
AC177837.4 | 100% | pos 134751 (F-) | ||||
CH201-575L9 | AC177837.4 | 99.86% | pos 73528 (R+) | |||
CH201-66L3 | AC177837.4 | 100% | pos 74918 (R-) | |||
ZMMBBb-165H5 | AC200137.5 | 98.75% | pos 162764 (R+) | |||
ZMMBBb-174N12 | AC200137.5 | 99.15% | pos 34947 (R+) | |||
ZMMBBb-194A6 | AC200137.5 | 98.46% | pos 169975 (R+) | AC177837.4 | 99% | pos 144580 (F-) |
ZMMBBb-195B8 | AC200137.5 | 99.56% | pos 161569 (R+) | |||
ZMMBBb-219I20 | AC200137.5 | 99.7% | pos 106850 (F+) | |||
ZMMBBb-251A2 | AC200137.5 | 98.78% | pos 169281 (R-) | |||
ZMMBBb-260K21 | AC177837.4 | 99.62% | pos 73741 (R-) | AC200137.5 | 99.46% | pos 96373 (F+) |
ZMMBBb-28P8 | AC200137.5 | 97.34% | pos 96396 (R+) | AC177837.4 | 99.6% | pos 75891 (F-) |
ZMMBBb-330M22 | AC200137.5 | 99.4% | pos 96377 (F+) | |||
ZMMBBb-409A6 | AC177837.4 | 99.03% | pos 29340 (R-) | |||
AC177837.4 | 99.03% | pos 49191 (R+) | ||||
AC177837.4 | 99.03% | pos 41163 (R+) | ||||
ZMMBBb-42F4 | AC200137.5 | 98.61% | pos 169937 (R+) | AC177837.4 | 98.63% | pos 121343 (F-) |
ZMMBBb-456E23 | AC200137.5 | 98.04% | pos 96904 (R+) | |||
ZMMBBb-480B15 | AC200137.5 | 98.81% | pos 125251 (F-) | |||
ZMMBBb-509B10 | AC200137.5 | 99.39% | pos 102112 (F-) | |||
ZMMBBb-542B15 | AC200137.5 | 98.94% | pos 96805 (R+) | |||
ZMMBBb-554G9 | AC177837.4 | 98.22% | pos 58381 (R-) | AC200137.5 | 97.09% | pos 126228 (F+) |
ZMMBBb-560O16 | AC200137.5 | 98.48% | pos 163655 (R-) | |||
ZMMBBb-576L12 | AC200137.5 | 99.23% | pos 162425 (F-) | |||
ZMMBBb-623M24 | AC200137.5 | 100% | pos 125840 (R-) | |||
ZMMBBb-92G19 | AC200137.5 | 97.92% | pos 171902 (F+) |
Fosmid Ends
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
Z_AI-1019B14 | AC200137.5 | 100% | pos 104986 (R+) | AC200137.5 | 99.62% | pos 162392 (F-) |
Z_AI-1079A19 | AC177837.4 | 99.49% | pos 189459 (R-) | |||
Z_AI-1238P24 | AC200137.5 | 100% | pos 95160 (F-) | |||
Z_AI-1249D1 | AC200137.5 | 99.86% | pos 123222 (F-) | |||
Z_AI-1249D16 | AC200137.5 | 100% | pos 123231 (F-) | |||
Z_AI-1270K10 | AC200137.5 | 99.87% | pos 168500 (R+) | |||
Z_AI-1302G1 | AC177837.4 | 100% | pos 84532 (F-) | |||
Z_AI-1394P20 | AC200137.5 | 98.92% | pos 47087 (F+) | |||
Z_AI-1397L10 | AC177837.4 | 100% | pos 61201 (F-) | |||
Z_AI-17G13 | AC200137.5 | 100% | pos 36161 (F-) | |||
Z_AI-22E13 | AC177837.4 | 100% | pos 188315 (F-) | |||
Z_AI-259D1 | AC177837.4 | 99.69% | pos 124880 (R-) | AC177837.4 | 100% | pos 91424 (F+) |
Z_AI-264D11 | AC200137.5 | 99.69% | pos 127564 (R-) | |||
Z_AI-337O10 | AC177837.4 | 100% | pos 128349 (F+) | |||
Z_AI-339E8 | AC200137.5 | 99.09% | pos 127506 (R-) | |||
Z_AI-412E10 | AC177837.4 | 98.39% | pos 42371 (F+) | |||
Z_AI-465A12 | AC200137.5 | 100% | pos 83223 (R-) | |||
Z_AI-544F19 | AC177837.4 | 99.78% | pos 91200 (F-) | |||
Z_AI-560M1 | AC200137.5 | 100% | pos 161434 (R+) | |||
Z_AI-573N8 | AC177837.4 | 99.62% | pos 133717 (R-) | |||
Z_AI-588A15 | AC200137.5 | 99.33% | pos 36524 (R+) | |||
Z_AI-626I5 | AC200137.5 | 99.72% | pos 110753 (F-) | |||
Z_AI-656M23 | AC200137.5 | 100% | pos 169130 (R+) | |||
Z_AI-692K4 | AC177837.4 | 100% | pos 45226 (R-) | AC177837.4 | 100% | pos 74681 (F-) |
Z_AI-703O1 | AC200137.5 | 100% | pos 174912 (R-) | |||
AC177837.4 | 100% | pos 2173 (R-) | ||||
Z_AI-706D3 | AC177837.4 | 100% | pos 134975 (R-) | |||
Z_AI-729G3 | AC177837.4 | 100% | pos 123466 (R-) | AC177837.4 | 100% | pos 93063 (F+) |
Z_AI-73K8 | AC200137.5 | 100% | pos 166185 (R+) | AC177837.4 | 99.64% | pos 39582 (F+) |
AC177837.4 | 99.64% | pos 47610 (F+) | ||||
Z_AI-816C2 | AC177837.4 | 98.42% | pos 1190 (F+) | |||
AC200137.5 | 98.42% | pos 173929 (F+) | ||||
Z_AI-845L23 | AC200137.5 | 97.26% | pos 174817 (R-) | |||
AC177837.4 | 97.26% | pos 2078 (R-) | ||||
Z_AI-879D10 | AC200137.5 | 98.74% | pos 165530 (R-) | |||
AC200137.5 | 100% | pos 165222 (R-) | ||||
Z_AI-925A4 | AC177837.4 | 100% | pos 87018 (R-) | |||
Z_AI-927E3 | AC177837.4 | 99.44% | pos 115562 (R-) | AC177837.4 | 100% | pos 79137 (F+) |
Z_AI-942G24 | AC200137.5 | 100% | pos 103558 (R-) | AC200137.5 | 99.18% | pos 123523 (F+) |
Z_AI-984D16 | AC177837.4 | 100% | pos 92951 (F+) |