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Alignment last updated: 01/15/2014 17:13:54

Join Legend

  • Red circle Serious alignment problem, requires review. (details...)
    • Zero, or more than one, overlaps
    • Half dove-tail >50 bp
    • Alignment identity <98%
    • Alignment length <50 bp
    • >2 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Yellow circle Minor alignment problem. (details...)
    • Exactly one overlap
    • Half dove-tail >0 bp and <=50bp
    • Alignment identity <99.6%
    • Alignment length <2000 bp
    • >0 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Green circle Excellent alignment, meets all defined criteria. (details...)
    • Exactly one RuleInfo
    • Half dove-tail <=0 bp
    • Alignment identity >=99.6%
    • Alignment length >=2000 bp
    • <=0 gaps, each gap >25 bp, not marked as an SSR
    • <=0 gaps, each gap >50 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, marked as an SSR
  • Black circle Certificate submitted, not yet approved.
  • Purple circle Certificate submitted and approved.
  • Gray circle Valid, contained clone
  • White circle Join not evaluated due to one accession not being finished.

Alignment for AC200137.5 and AC177837.4

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AC200137.5 Zea mays chromosome 1 clone CH201-289B7, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces [htgs_limited_order]

Length: 184,104 bp

AC177837.4 Zea mays chromosome 1 clone CH201-54L9, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces [htgs_limited_order]

Length: 195,531 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

  • Alignment 1
  • Align ID: 116273
  • Total Length: 11365
  • Aligned Length: 11364
  • Percent Identity: 100
  • Number of Gaps: 1
  • Number of Mismatches: 0
  • Source: CtgOverlap Seq-Align
Overlap Image
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Alignment 1 of 1

 AC200137.5 : + : 172740..184104
 AC177837.4 : + : 1..11364
 Mismatches = 0, Gaps = 1, Length = 11365
 Percent identity = 100%
 Score = 2.098e+04 bits (11361), Expect = 0
  5 BAC and 1 Fosmid bridging clones.
  5 BAC and 0 Fosmid concordant clones.
  0 BAC and 1 Fosmid discordant clones.

AC200137.5 >172740  gaattcctagccacagggttacatgagctaacgttcaccgaaacagaagcagaagggtga 172799 
AC177837.4 >1       ............................................................ 60     

AC200137.5 >172800  cctttcgagcgacagctccttgctctggagggagaggacgaggtcgaggtgttcccacgc 172859 
AC177837.4 >61      ............................................................ 120    

AC200137.5 >172860  gcccttggcgccgccgtcgccgtcgaagcgaagtctagcgaacttgagatcgctcggacc 172919 
AC177837.4 >121     ............................................................ 180    

AC200137.5 >172920  ctccccttggcaaggctgcgattggttccaccgccgcttcctcgctgcgccgggcctcgc 172979 
AC177837.4 >181     ............................................................ 240    

AC200137.5 >172980  ggtcgcggcagccgtctccatggcaatggcgtctgtcatgagcggaagtggaggctaggg 173039 
AC177837.4 >241     ............................................................ 300    

AC200137.5 >173040  ttctgggtttggaggcacgtgctgcctcgcccgtttgatttctccgtgcccgaagacgcg 173099 
AC177837.4 >301     ............................................................ 360    

AC200137.5 >173100  ccgtgaaaccttcttccgcgtccgaccaatattaataaagcacgaatcttaaagatgtgc 173159 
AC177837.4 >361     ............................................................ 420    

AC200137.5 >173160  taaccagactgaccgaccgagtcaccgtcacggtcaccgcggccccagcccaacccagag 173219 
AC177837.4 >421     ............................................................ 480    

AC200137.5 >173220  cattcttggtcccgatttcctcagctcaggtgccgggttccccaggcacaagctacaaac 173279 
AC177837.4 >481     ............................................................ 540    

AC200137.5 >173280  cctaacccatccgggagcaccggaaattttggaggctgaaacggaaaggggagaaggcga 173339 
AC177837.4 >541     ............................................................ 600    

AC200137.5 >173340  tgacgacgagggagccgcgcgaggcgtcccggcgcgatgggcgcgactcgcacgggaggc 173399 
AC177837.4 >601     ............................................................ 660    

AC200137.5 >173400  gcccccactcctcgttcaggtcgcggagggacgatcccaggtaccaatccgctgcatccc 173459 
AC177837.4 >661     ............................................................ 720    

AC200137.5 >173460  ccgtcggatttccgatctgactgcgttttagtatggattagaatgctggttttagcgggc 173519 
AC177837.4 >721     ............................................................ 780    

AC200137.5 >173520  atcggtggttctttcttgaacctgcagtttcttacaagatacaatttttcgaatctcttt 173579 
AC177837.4 >781     ............................................................ 840    

AC200137.5 >173580  tggtagcccaaggagaagagatgacaggaggcgtgaatcggacagggcgcaccacagaag 173639 
AC177837.4 >841     ............................................................ 900    

AC200137.5 >173640  tcgagatggagaatttttggaggtggtggaccatgatcagaagcggaatagagatgctgc 173699 
AC177837.4 >901     ............................................................ 960    

AC200137.5 >173700  gcagagcgctgaccctccgaatgctgagtcgaagtcagcgagtgatatgaagaatggccc 173759 
AC177837.4 >961     ............................................................ 1020   

AC200137.5 >173760  ctccaccaggcatgagagatcacctaggggaaccaaacgattttctgagtcgagtgaggc 173819 
AC177837.4 >1021    ............................................................ 1080   

AC200137.5 >173820  atggcggcctcggtctttctttcaggttcttatcttttctcagtgtattatatcaaaagg 173879 
AC177837.4 >1081    ............................................................ 1140   

AC200137.5 >173880  gaataccaccaatagcttctgctctctattacaaattgtttcatcatagctacaaatagt 173939 
AC177837.4 >1141    ............................................................ 1200   

AC200137.5 >173940  gtgctttgactatcacggttacatacatatgtgctcacgatgttacagagctcactattt 173999 
AC177837.4 >1201    ............................................................ 1260   

AC200137.5 >174000  tggatagctaatagtaatatagtattttatggagttgctattttagatagccgaacagca 174059 
AC177837.4 >1261    ............................................................ 1320   

AC200137.5 >174060  agtattccacattcggtaacttcaccggtactggaaaatgtacctaacagattagtgtta 174119 
AC177837.4 >1321    ............................................................ 1380   

AC200137.5 >174120  ttaggtggatccataggtcattatttgcttgtggtctggattgcaaacatcctggttatg 174179 
AC177837.4 >1381    ............................................................ 1440   

AC200137.5 >174180  acagctctggtaactaatgcaattgtgccgagtgttgtctaataacaaatattgtgttga 174239 
AC177837.4 >1441    ............................................................ 1500   

AC200137.5 >174240  tagtagagacatttaatgtgcccaaaacattataagtattccatgtttgtgttattctga 174299 
AC177837.4 >1501    ............................................................ 1560   

AC200137.5 >174300  ataaatgctatatatttattttaagactcacggttaaaggacttctgagtcgtatgttaa 174359 
AC177837.4 >1561    ............................................................ 1620   

AC200137.5 >174360  gaggctctggagtgcatatgatttttttaggatttgtgttatcctatgtagaatgtagaa 174419 
AC177837.4 >1621    ............................................................ 1680   

AC200137.5 >174420  accgatatttgagataatcagctcaaattagtacctataggttcgttttcacccatgttt 174479 
AC177837.4 >1681    ............................................................ 1740   

AC200137.5 >174480  agctcaaatattcattagctatcctctgtttgtgattatgtgtgaaccactgaacctgtc 174539 
AC177837.4 >1741    ............................................................ 1800   

AC200137.5 >174540  gttgcatttctgttatttaagttcatgaaatgtagttttagtgtacagattagttagatt 174599 
AC177837.4 >1801    ............................................................ 1860   

AC200137.5 >174600  catggatatggtttgccagctttggttaacatgaatatacttgtcttaattaatggttgc 174659 
AC177837.4 >1861    ............................................................ 1920   

AC200137.5 >174660  aagtaacaactctaacattcatatgcatcttttgtagaatcatctgaagtgtggaggttg 174719 
AC177837.4 >1921    ............................................................ 1980   

AC200137.5 >174720  gtctctgcataaagaatgttaggtcattgttaaatcatacaaaaattcttccacttgtcg 174779 
AC177837.4 >1981    ............................................................ 2040   

AC200137.5 >174780  tacatacataacacattcctcctgatgtagtgggacttcttttatgacacattgattcaa 174839 
AC177837.4 >2041    ............................................................ 2100   

AC200137.5 >174840  atgcccactgtttgtaacaatgttagactacctgtgcttctatgtacagcacaatgagcg 174899 
AC177837.4 >2101    ............................................................ 2160   

AC200137.5 >174900  tggaagtgctgggcaaggtggtcggcattatgaccgccaggctagtggtgagatgccttc 174959 
AC177837.4 >2161    ............................................................ 2220   

AC200137.5 >174960  ttagtttgtattttgtgcatttatttaattatccattctctatacatgctaagttattta 175019 
AC177837.4 >2221    ............................................................ 2280   

AC200137.5 >175020  ttgtttctaagactatggaaggcaaagggagcatctctctgatagagataaacagaagac 175079 
AC177837.4 >2281    ............................................................ 2340   

AC200137.5 >175080  agagagacacagtttgcagggaaagattgagctggaccagcaaaagaaggatggtgattc 175139 
AC177837.4 >2341    ............................................................ 2400   

AC200137.5 >175140  aacatggaagcatgatggatttttccagttggaggaagcagcaccccttgccaagaagag 175199 
AC177837.4 >2401    ............................................................ 2460   

AC200137.5 >175200  gccaccatttcaggagatgaagatacaagaatctgctgacactgtaacagaaccagattc 175259 
AC177837.4 >2461    ............................................................ 2520   

AC200137.5 >175260  tagatcaaggaattatcaggcacggggatatggaaatcatcgacccttcctaaggccaga 175319 
AC177837.4 >2521    ............................................................ 2580   

AC200137.5 >175320  tgatcgaggctttagaagggggtttcctgaccacaggagtgatggccagaggaatgggca 175379 
AC177837.4 >2581    ............................................................ 2640   

AC200137.5 >175380  tgatataaggggaagattttctgttaggggaggaatggacagagacaggtttaacaattc 175439 
AC177837.4 >2641    ............................................................ 2700   

AC200137.5 >175440  atatggtgggagaagcaacgcagagcaggcttctggtgatcaagaagaaaaatggaagca 175499 
AC177837.4 >2701    ............................................................ 2760   

AC200137.5 >175500  tgacctctatgatcagacaaacaggagcccgcctccaaagactgaggaagagcagattgc 175559 
AC177837.4 >2761    ............................................................ 2820   

AC200137.5 >175560  caaagttgaagcgctgttggcactgtagctgtcttatttatgtctggagttgttttttgt 175619 
AC177837.4 >2821    ............................................................ 2880   

AC200137.5 >175620  gatagattatcatgtacttggtttcagatgtgttgaatactgtcttttttattctatata 175679 
AC177837.4 >2881    ............................................................ 2940   

AC200137.5 >175680  ttctgcatatctatgtggaattgtggattaaaccaccttatgaagctattccatttggac 175739 
AC177837.4 >2941    ............................................................ 3000   

AC200137.5 >175740  tgataatattgtactagataatcatgagtttcataatgtagaaccatcaagcgaagtaca 175799 
AC177837.4 >3001    ............................................................ 3060   

AC200137.5 >175800  agacaatcatgagtttggtaggtaaacaatttgctcctcgggtgcgtttagagctaaatt 175859 
AC177837.4 >3061    ............................................................ 3120   

AC200137.5 >175860  gcttctttaggtagtgtttggttcttcccgatctgttgtttgtatatgtttcatatagta 175919 
AC177837.4 >3121    ............................................................ 3180   

AC200137.5 >175920  tataggggctctaaaaaggaaaattatgcttaatggtgtgtttgatttggcttttgtcct 175979 
AC177837.4 >3181    ............................................................ 3240   

AC200137.5 >175980  ctaaaagtcaaaagccaaaccaaaggattggaatcaggaagtaactttttctaaaagctg 176039 
AC177837.4 >3241    ............................................................ 3300   

AC200137.5 >176040  actttgtaaaattgaaagcacttcttaatctgcttttagtggcttttgaatgaaacttta 176099 
AC177837.4 >3301    ............................................................ 3360   

AC200137.5 >176100  aaaatatatatcgaaaaccttttgacggctttttgtggtttgcactaaacggtttttagc 176159 
AC177837.4 >3361    ............................................................ 3420   

AC200137.5 >176160  attttaacagctcacagcccacagcgattttttccacagcccacagcgacttttttcaca 176219 
AC177837.4 >3421    ............................................................ 3480   

AC200137.5 >176220  gctcacagtccacagcatcttttttcacagtcacggcctaaccaaatagaccctaaatat 176279 
AC177837.4 >3481    ............................................................ 3540   

AC200137.5 >176280  tgaaccatcggctctccaaaatcttccagacgaagccactttctaaacatgaagctgctc 176339 
AC177837.4 >3541    ............................................................ 3600   

AC200137.5 >176340  tatccgaatcgactttgaaaccaaacatctttctcgactccttttaacctggtgcttggt 176399 
AC177837.4 >3601    ............................................................ 3660   

AC200137.5 >176400  tctaggactaaagtttagcacatgtcacatcaaatatttgaatgcacatgtcctattcgg 176459 
AC177837.4 >3661    ............................................................ 3720   

AC200137.5 >176460  tgagtgaatttaattagaaagaaacaagatcgattagaaaaagaagaggagaagcgaccc 176519 
AC177837.4 >3721    ............................................................ 3780   

AC200137.5 >176520  cgtccctggcctcagcgcgcctcggcccagctgccccctttccccctgcgcgcccaaccg 176579 
AC177837.4 >3781    ............................................................ 3840   

AC200137.5 >176580  cctcccactcctctctcccgcgcacccatgatataggaagagagaaaccactcctctccc 176639 
AC177837.4 >3841    ............................................................ 3900   

AC200137.5 >176640  tcttcctcgacctcctcctttggacaaatgagctcttatttgctatgctagtggagcatg 176699 
AC177837.4 >3901    ............................................................ 3960   

AC200137.5 >176700  tttgcttctatccggtctatttaattcaacaactagttgtacaataagataatgtgtact 176759 
AC177837.4 >3961    ............................................................ 4020   

AC200137.5 >176760  ttaatttagcctttgtttcaatttggatgtaataagacaacatgttagtggtttgtgtga 176819 
AC177837.4 >4021    ............................................................ 4080   

AC200137.5 >176820  actatttgttgtatgttctaatggagcactgaactattgttgtttgtgaaatgaattttt 176879 
AC177837.4 >4081    ............................................................ 4140   

AC200137.5 >176880  gtgaactgatgaaggtcgaccttgctgtcatgcagcacctaggcctagcatggataattt 176939 
AC177837.4 >4141    ............................................................ 4200   

AC200137.5 >176940  gttttgcaaaagtcttacttaacttgtagcatatatcacatactatgcaatagaagcaac 176999 
AC177837.4 >4201    ............................................................ 4260   

AC200137.5 >177000  aactagaagtgccaacaaataccacatacaatcttggtaaatacttgccaacacatatca 177059 
AC177837.4 >4261    ............................................................ 4320   

AC200137.5 >177060  cacactacgcaacaaaagtagatacttcaagtgacaacaaatatcacatacaacctgcaa 177119 
AC177837.4 >4321    ............................................................ 4380   

AC200137.5 >177120  acataattcacacactttgccatagcttcaagttatcacataaataatttttaggaggta 177179 
AC177837.4 >4381    ............................................................ 4440   

AC200137.5 >177180  caaactccacaacatgttcacatggcactggctactcatgtacaccacacataactgcat 177239 
AC177837.4 >4441    ............................................................ 4500   

AC200137.5 >177240  atcaaattgaactagacttggttaatacttggtaactacttggtaggtaccacattcaac 177299 
AC177837.4 >4501    ............................................................ 4560   

AC200137.5 >177300  acaataaactggtactgtatacactcctattcgacaacctaaagctaactgttgtactcc 177359 
AC177837.4 >4561    ............................................................ 4620   

AC200137.5 >177360  tacttgtaggcccattagaagtgtgtgtcaaacttgaacaaaccggtatacacttttcca 177419 
AC177837.4 >4621    ............................................................ 4680   

AC200137.5 >177420  aggtgtcggcgtctcgagaccggggggtccctaagccgacgagtgagtgtgccgcgtgcc 177479 
AC177837.4 >4681    ............................................................ 4740   

AC200137.5 >177480  ccagcccagatgggtcgagcgcgtgggcgagcgcgaaggggggaagcgaggcggccggag 177539 
AC177837.4 >4741    ............................................................ 4800   

AC200137.5 >177540  acgggcgtgagagaggtggaaatcccgcggccttcgtgttcgtcccgcgcccaggtcggg 177599 
AC177837.4 >4801    ............................................................ 4860   

AC200137.5 >177600  tgcgcttgcagtagggggttacaagcgtccacgcgggtgagggaagcgagcggccccaag 177659 
AC177837.4 >4861    ............................................................ 4920   

AC200137.5 >177660  agagcgcctgtcccgtcctcgtccccgcgcggccaaccttctccaagaaggccctggtcc 177719 
AC177837.4 >4921    ............................................................ 4980   

AC200137.5 >177720  ttccttttataggcgtaaggagaggatccaggtgtacaatgggggtgtagcagagtgcta 177779 
AC177837.4 >4981    ............................................................ 5040   

AC200137.5 >177780  cgtgtctagcggggggagagctagcgccctaagtacatgccaatgtggcagccggagaga 177839 
AC177837.4 >5041    ............................................................ 5100   

AC200137.5 >177840  tcttggcaccctgctggtgtgatgtcgtggctgtcggaggagcaacggagcctggcggag 177899 
AC177837.4 >5101    ............................................................ 5160   

AC200137.5 >177900  ggacagctgtcggagcggttgagtccttgctgacgtccccctgcttccgtaagggagctg 177959 
AC177837.4 >5161    ............................................................ 5220   

AC200137.5 >177960  agagccaccgtcgtcacagggctagcggggcgccatcatttcctatctggcggagctagc 178019 
AC177837.4 >5221    ............................................................ 5280   

AC200137.5 >178020  cagatgggacaccggtcttgttctctgcggcccgagtcggctcggggtagggtgatgatg 178079 
AC177837.4 >5281    ............................................................ 5340   

AC200137.5 >178080  gcgcttcctgttgacgtggcgggcctgtgtcctaggtcgggcgacgtggaggctcctccg 178139 
AC177837.4 >5341    ............................................................ 5400   

AC200137.5 >178140  aagccgaggtcgagtctgtcttccatggccgaggccgagcccgagctcctgggtcgggcg 178199 
AC177837.4 >5401    ............................................................ 5460   

AC200137.5 >178200  aggcggaggtcgttcggtagaggccagggcggagtccgagccctggggtcgggcgaagcg 178259 
AC177837.4 >5461    ............................................................ 5520   

AC200137.5 >178260  gagttcgtcgtcttctggggctgagcccgagtccgagccctgggtcgggcggagcggagt 178319 
AC177837.4 >5521    ............................................................ 5580   

AC200137.5 >178320  tcgccgtcttccggggcctagcccgagtctgagccctgggtcgggcggagcggagttcgc 178379 
AC177837.4 >5581    ............................................................ 5640   

AC200137.5 >178380  cgtcttccggggcctagcccgagtccgagccctgggtcgggcggagcggagttcgccgtc 178439 
AC177837.4 >5641    ............................................................ 5700   

AC200137.5 >178440  ttccggggcctagcccgagtccgagccctgggtcgggcggagcggagttcgccgtcttcc 178499 
AC177837.4 >5701    ............................................................ 5760   

AC200137.5 >178500  ggggcctagcccgagtccgagccctgggtcgggcggagcggagtttcctatggcgccttt 178559 
AC177837.4 >5761    ............................................................ 5820   

AC200137.5 >178560  ggcaaggcctgactgcctgtcagtctcactctgtcaagcggcactgcagtcggagtggcg 178619 
AC177837.4 >5821    ............................................................ 5880   

AC200137.5 >178620  caggcggcgctgtccttctgtcagaccggtcagtggagcggcgaagtgacggcggtcact 178679 
AC177837.4 >5881    ............................................................ 5940   

AC200137.5 >178680  tcggctctgccggggggcgcgcgtcaggataaaggtgtcaggctacctttgcgttaaatg 178739 
AC177837.4 >5941    ............................................................ 6000   

AC200137.5 >178740  ctcctgcgactcggtcggtcggcgcggcgatttgatcagggttgcttcttagcgaaggca 178799 
AC177837.4 >6001    ............................................................ 6060   

AC200137.5 >178800  aggcctcgggcgagccggagatgtatccgccgttaaaggggggcctcgggcgagacggaa 178859 
AC177837.4 >6061    ............................................................ 6120   

AC200137.5 >178860  acccctcggggtcggctgcccttgcccgaggctaggctcgggcgaggcgtgatcgagtcg 178919 
AC177837.4 >6121    ............................................................ 6180   

AC200137.5 >178920  ctcgtatggactgatccctgacttaatcgcacccatcaggcctctgcagctttatgctga 178979 
AC177837.4 >6181    ............................................................ 6240   

AC200137.5 >178980  tgggggttaccagctgagaattaggcgtattgagggtacccctaattatggtccccgaca 179039 
AC177837.4 >6241    ............................................................ 6300   

AC200137.5 >179040  gtagcccccgagcctcgaagggagtgttagcacttgcttggaggctttcgtcgcactttt 179099 
AC177837.4 >6301    ............................................................ 6360   

AC200137.5 >179100  ttgcaaggggaccagcctttctcggttgcattttgttccggtgggtgcgcgcgagcgcac 179159 
AC177837.4 >6361    ............................................................ 6420   

AC200137.5 >179160  ccgccgggtgtagcccccgaggcctcggaggagtggtttcactcccccgaggtcttaatg 179219 
AC177837.4 >6421    ............................................................ 6480   

AC200137.5 >179220  ccttgcgtaatgcctcggctggtctggttgttccctcatgcgaactggccgtagcccggg 179279 
AC177837.4 >6481    ............................................................ 6540   

AC200137.5 >179280  tgcacggtcggggcccaagttctcgggctggtatgttgatgctgtcaacggtttgggcgg 179339 
AC177837.4 >6541    ............................................................ 6600   

AC200137.5 >179340  agccgggtttgcgagagcagcccccgagcctccgcacagggcgagagggcgatcagggac 179399 
AC177837.4 >6601    ............................................................ 6660   

AC200137.5 >179400  agactcggcttttttacatatgcccctacgtcgcctttccgcaaggaggaggggggagag 179459 
AC177837.4 >6661    ............................................................ 6720   

AC200137.5 >179460  cgccatgttaccctcgatgggcaccgaacatggtgtctccggtgagctgcaagcgggtaa 179519 
AC177837.4 >6721    ............................................................ 6780   

AC200137.5 >179520  tccgagtggacgtccgtgccccgttcgttgggggtcggctaggggcccagaggcacgccc 179579 
AC177837.4 >6781    ............................................................ 6840   

AC200137.5 >179580  aaaagtacctgcgggtgatctgccggacccggtcccctggcgacggggtccgagggctcg 179639 
AC177837.4 >6841    ............................................................ 6900   

AC200137.5 >179640  atgcctccctccgttgggattccgttacaagatcgctcccgctggtctcggaaatgtcct 179699 
AC177837.4 >6901    ............................................................ 6960   

AC200137.5 >179700  agggtacctcgggagcgcagcccgagccttggttatgtatcgaacgtacccctggtcatc 179759 
AC177837.4 >6961    ............................................................ 7020   

AC200137.5 >179760  cctcgctcggcgtctgaggcgactgtgaacccttcgggggccagccttcgaacccctgat 179819 
AC177837.4 >7021    ............................................................ 7080   

AC200137.5 >179820  cagtaatgggcgcggagcccgagtagcttgaggcggccgtggagcccttcggggggccgg 179879 
AC177837.4 >7081    ............................................................ 7140   

AC200137.5 >179880  ccttcgaacctttgaccagtagtgggtgtagggcccacgcgatctgaggcgactgttgaa 179939 
AC177837.4 >7141    ............................................................ 7200   

AC200137.5 >179940  cccctcggagggccagccttcgaacctctgatcagtaggggggctcggagcccggttcct 179999 
AC177837.4 >7201    ............................................................ 7260   

AC200137.5 >180000  tcacagggaaggatccttttcggggtattcccctttcccggtccctgttgcaagagatag 180059 
AC177837.4 >7261    ............................................................ 7320   

AC200137.5 >180060  agaaagaggaaaaaaggaaaaggatacgaaatcgaacgacgtggcgtaccttttttgacg 180119 
AC177837.4 >7321    ............................................................ 7380   

AC200137.5 >180120  cggttattacggcgaaggcgaagcgtcgcccgcttctcctgccagaagcgtcgcctgtcc 180179 
AC177837.4 >7381    ............................................................ 7440   

AC200137.5 >180180  cgccgcggagttaatgcgacggggtgagttgttggcagggcggccgttgcgcgtgcgcga 180239 
AC177837.4 >7441    ............................................................ 7500   

AC200137.5 >180240  gccgttggaggaacggatcacgggcgccctgtcttcacgctgtgagagtgggttctcttg 180299 
AC177837.4 >7501    ............................................................ 7560   

AC200137.5 >180300  ctgcccccggacgggacgtgagtctggccgacgacgtgaccactgctcccgcccgcctgc 180359 
AC177837.4 >7561    ............................................................ 7620   

AC200137.5 >180360  caccgtcattactgccggcccactttcggtcgtattgaccgtcgcgccaggctggcgttg 180419 
AC177837.4 >7621    ............................................................ 7680   

AC200137.5 >180420  ctgggtcgtgcgctgggccgcctcgagtcgcggtattggttccgcaaccgaagaggcgcg 180479 
AC177837.4 >7681    ............................................................ 7740   

AC200137.5 >180480  gtggtggcgcaagtggcggtgcagttgcttgcatgcagcatctggcacgccggttgcgtg 180539 
AC177837.4 >7741    ............................................................ 7800   

AC200137.5 >180540  acgcgtgggcctgggcctccatgccggcgcgttgggagtcggagaagcgcgtccacctgg 180599 
AC177837.4 >7801    ............................................................ 7860   

AC200137.5 >180600  cgcggttgcatgccgcctgcatgactgcccgccccttccgcccgttggtctgggcaaaag 180659 
AC177837.4 >7861    ............................................................ 7920   

AC200137.5 >180660  tgggggtcgttgtcgtcgtagtcagagcgggcggcggcgagccgctcgtcagtcttctgt 180719 
AC177837.4 >7921    ............................................................ 7980   

AC200137.5 >180720  tgctccgcaggccttcccccatggagtggggttgttcgtacctgcggagggggaaccgga 180779 
AC177837.4 >7981    ............................................................ 8040   

AC200137.5 >180780  gttccatttgtaatggcactttgtgtcggtatttttgttcattgtggccgtcgaggcctg 180839 
AC177837.4 >8041    ............................................................ 8100   

AC200137.5 >180840  aacatgtatgtaattttggcacagagccgtgttttttcctcatttttgagcactaagact 180899 
AC177837.4 >8101    ............................................................ 8160   

AC200137.5 >180900  cgcctgtcgattatctgaatcgcttcaccaagcatgagtcgccccatgtcaaggtgacga 180959 
AC177837.4 >8161    ............................................................ 8220   

AC200137.5 >180960  gtgaggtatccgtatcccggaggcgtaggagtccctcggctcgatcgtccttgttgtctg 181019 
AC177837.4 >8221    ............................................................ 8280   

AC200137.5 >181020  aggctcctctagcttagttaaagagaccccttggctgctcttcgacgagccgaggccagg 181079 
AC177837.4 >8281    ............................................................ 8340   

AC200137.5 >181080  ggtagcgatatcaacacgaacagaggcggagttggcttgaaaaatgaagacctggttggc 181139 
AC177837.4 >8341    ............................................................ 8400   

AC200137.5 >181140  cggagcctagccgggttgtccgtcagcgggaccgatgccggagttgatcagccgaggcct 181199 
AC177837.4 >8401    ............................................................ 8460   

AC200137.5 >181200  caggggcaaccggccgagccgcctgctcgggccggattcccggagaagtccctggcagcg 181259 
AC177837.4 >8461    ............................................................ 8520   

AC200137.5 >181260  attgcccgggcgtggtgatgacgtcgtccttcggagcggagatcctcggaccgcgtcgcc 181319 
AC177837.4 >8521    ............................................................ 8580   

AC200137.5 >181320  gttcgaggctgggtcggacctcgctgaaggtatcgtcgatgccgagggtgctacagctcc 181379 
AC177837.4 >8581    ............................................................ 8640   

AC200137.5 >181380  cttccagcgtgaagacccgagcctgcaggatcagattgtcttgtagcgtgtgccttctgc 181439 
AC177837.4 >8641    ............................................................ 8700   

AC200137.5 >181440  agccgccgaggccagaatacacgccctcgctgtgttgtaaagctgcgtctcctttcctct 181499 
AC177837.4 >8701    ............................................................ 8760   

AC200137.5 >181500  tgtttcgagtatctggactttttgtcggtaacatggatgtttgtgtgagcgggagttgct 181559 
AC177837.4 >8761    ............................................................ 8820   

AC200137.5 >181560  tctcgcgggaggtgatgagtgaggtatccgtatcccggaggcgtgggagtccctcggctc 181619 
AC177837.4 >8821    ............................................................ 8880   

AC200137.5 >181620  ggtcggccttgccgcttacgcgtactttcacccgtccatgaggccctgtcaccgactcgg 181679 
AC177837.4 >8881    ............................................................ 8940   

AC200137.5 >181680  tcgagaaggctcgaaggatcgctttggcataagggcttccgaacgtaaagacttgttcga 181739 
AC177837.4 >8941    ............................................................ 9000   

AC200137.5 >181740  tccgcggagtcactttatccgaacgcgagttacttatcgcagaaggtgatgagtgaggta 181799 
AC177837.4 >9001    ............................................................ 9060   

AC200137.5 >181800  tccgtatcccggaggcgtaggagtccctcggctcggtcagccttggctgcttacgtgtac 181859 
AC177837.4 >9061    ............................................................ 9120   

AC200137.5 >181860  tccgtcgtttccaggacccacttttcgaagtagccaaaaagcacggaagatattctggta 181919 
AC177837.4 >9121    ............................................................ 9180   

AC200137.5 >181920  aaagagatcttttttcgaggaaaattttgacgcagagggggtttccccccttttagcccc 181979 
AC177837.4 >9181    ............................................................ 9240   

AC200137.5 >181980  cgagggagggtcgggctttgccgaggcgaggccgacccttccttgttgactaaactttgc 182039 
AC177837.4 >9241    ............................................................ 9300   

AC200137.5 >182040  gtgggtgcgaggtatatgaacaacttgaaaacatcttaagggtagaagcgacatagctgt 182099 
AC177837.4 >9301    ............................................................ 9360   

AC200137.5 >182100  tggatgttccaagcgttgtcgtagacctcgccttgactgtttgccagcttgtacgttccg 182159 
AC177837.4 >9361    ............................................................ 9420   

AC200137.5 >182160  ggcttcagaactttggcgatgacgaatggcccctcccaggggggcgtgagcttgtgcctc 182219 
AC177837.4 >9421    ............................................................ 9480   

AC200137.5 >182220  cctcgggtgtcttgccgcagccgaagtaccaggttgcccacctggaggtcccggggtcgg 182279 
AC177837.4 >9481    ............................................................ 9540   

AC200137.5 >182280  acccctcgggcgtggtagcgtcgcagggattgctgataccgcgccgagtgtagtaaggcc 182339 
AC177837.4 >9541    ............................................................ 9600   

AC200137.5 >182340  ctgtcccaagcctcttccaactggtccagcgagtcttctcggctagcttggttgctttga 182399 
AC177837.4 >9601    ............................................................ 9660   

AC200137.5 >182400  tcgtcgtaggccctcgtcctcgggggagccgtattccaggtcagtgggcaagacggcctc 182459 
AC177837.4 >9661    .....................-...................................... 9719   

AC200137.5 >182460  ggccccgtagaccaggaagaacagcgtgaaacccgtggctcggctcggcgttgtcctcag 182519 
AC177837.4 >9720    ............................................................ 9779   

AC200137.5 >182520  gctccagaccaccgaggggagttccttcatccatcgcttgccgaacttgttgaggtcgtt 182579 
AC177837.4 >9780    ............................................................ 9839   

AC200137.5 >182580  gtaaatccgaggcttgagcccttgtagaatcatgccattggcacgctctacttgcccatt 182639 
AC177837.4 >9840    ............................................................ 9899   

AC200137.5 >182640  cgacatgggatgagccacggcggcccagtccacccggatgtggtgatcctcgcaaaaatc 182699 
AC177837.4 >9900    ............................................................ 9959   

AC200137.5 >182700  caagaattttctgccggtgaactgggtgccgttgtcggtgatgatggagtttgggacccc 182759 
AC177837.4 >9960    ............................................................ 10019  

AC200137.5 >182760  gaagtgatggatgatgttggtgaagaacgccaccgcctgctcggacctgatgctgttcag 182819 
AC177837.4 >10020   ............................................................ 10079  

AC200137.5 >182820  gggtcggacctcgatccacttggagaatttgtcgatggtgaccagcaggtgcgtgtagcc 182879 
AC177837.4 >10080   ............................................................ 10139  

AC200137.5 >182880  cccgggcaccttctgcaagggaccgacgaggtccagaccccacacagcaaagggccaggt 182939 
AC177837.4 >10140   ............................................................ 10199  

AC200137.5 >182940  gatgggtatcgtctgcagagcctgagcgggcaggtgggtctgcttcgcatagaattggca 182999 
AC177837.4 >10200   ............................................................ 10259  

AC200137.5 >183000  cccttcgcaggtgcggacaattctagtggcgtcagccaccgtcgtcggccagtagaagcc 183059 
AC177837.4 >10260   ............................................................ 10319  

AC200137.5 >183060  ttgccggaaagcattcccgacgagggctcgaggcgctgcatgatggccgcaagcccccaa 183119 
AC177837.4 >10320   ............................................................ 10379  

AC200137.5 >183120  gtgtatttcttgcaggagttcctgaccttcggcgatggagatgcaccgctggaggatgcc 183179 
AC177837.4 >10380   ............................................................ 10439  

AC200137.5 >183180  cgaggggctgcggtggtagagctccttctcatcgcccagcaagacgaacgacttggcgcg 183239 
AC177837.4 >10440   ............................................................ 10499  

AC200137.5 >183240  tcgcgctacccgccgagcctcggcttggtcgaggggtagctctccttggcggagatattg 183299 
AC177837.4 >10500   ............................................................ 10559  

AC200137.5 >183300  caggtactgggtctgccaatctcgatcaggcgtggccccgctccgctcctcctcgatgcg 183359 
AC177837.4 >10560   ............................................................ 10619  

AC200137.5 >183360  cagcgcctcgccctcgggggccgagggtacctcgggctgaaccgaggacgcctcgggctg 183419 
AC177837.4 >10620   ............................................................ 10679  

AC200137.5 >183420  ggccgagggtacctcaggctgggccgagggtacctcgggctggaccgagggtgcctcggg 183479 
AC177837.4 >10680   ............................................................ 10739  

AC200137.5 >183480  ctcgggcgtgtcgttgatcttgacggagggttgatgcggatcctgggagaagacgtccgg 183539 
AC177837.4 >10740   ............................................................ 10799  

AC200137.5 >183540  gggaaccgtcgttcgccccgaggctatttttgccagctcgtccgcagtctcattgtagcg 183599 
AC177837.4 >10800   ............................................................ 10859  

AC200137.5 >183600  ctgagcgatgtggttaagctcgagcccgtagaacttgtcttccaggcgccgaacctcatc 183659 
AC177837.4 >10860   ............................................................ 10919  

AC200137.5 >183660  gcagtaggcctccatcttcgggtcgcggcagtgggagttcttcatgacttggtcgatgac 183719 
AC177837.4 >10920   ............................................................ 10979  

AC200137.5 >183720  gagctgcgagtcaccgcgggcgtcgaggcgtctgacccctagcttgatggcgatccgcaa 183779 
AC177837.4 >10980   ............................................................ 11039  

AC200137.5 >183780  cccgttgaccagagcctcgtactcagccacattgttggacgccgggaaatggaggcgtag 183839 
AC177837.4 >11040   ............................................................ 11099  

AC200137.5 >183840  cacgtagcgtaggtgcttcccgaggggcgagatgaagagcaggcccgcgccggctcccgt 183899 
AC177837.4 >11100   ............................................................ 11159  

AC200137.5 >183900  cttcatcagcgacccgtcgaaaaacatggtccagagctccggttggatcggagccgtcgg 183959 
AC177837.4 >11160   ............................................................ 11219  

AC200137.5 >183960  cagctgggtgtcgacccattcggctacgaagtccgccaatacctgggacttgatggcctt 184019 
AC177837.4 >11220   ............................................................ 11279  

AC200137.5 >184020  ccgaggggcgaacgagattgtctcgcccatgatttccaccacccactttgcgatactgcc 184079 
AC177837.4 >11280   ............................................................ 11339  

AC200137.5 >184080  cgaggcctctcggcactggatgatc 184104 
AC177837.4 >11340   ......................... 11364  



Events
IdTypeDateWhodidComment
295010InitHasAlign01/15/2014 17:13:54cgi_chen
find_overlapId: find_overlap_app.cpp 404199 2013-06-20 22:08:27Z rafanovi $ built Aug  1 2013. Toolkit wrapper  using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib
Info: Blast Including ID: 545481138
Info: Running Blast Filter: 0
Info: Determined ID: gi|545481138 needs Merging.
Info: Blast Warning: Empty Query Set
Info: Determined ID: gi|545481138 needs Merging.
Info: Blast Warning: Empty Query Set
Info: Determined ID: gi|545481138 needs Merging.
Info: Best Rank: 0 in  for 545481138 of 1
Info:  NG returned 1 alignments

tpf_solo for TPF_updated_1_v2



down arrow BAC Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
CH201-102C16AC177837.499.74%pos 74892 (R-)  
CH201-113E21 AC177837.499.06%pos 92756 (F-)
CH201-15O20 AC177837.4100%pos 103582 (F+)
CH201-179N12AC177837.498.8%pos 260 (R+)  
AC200137.598.8%pos 172999 (R+)  
CH201-191E5 AC177837.4100%pos 108069 (F+)
CH201-22A18 AC177837.4100%pos 75369 (F-)
 AC177837.4100%pos 74891 (F-)
CH201-253E8AC177837.4100%pos 130167 (R-)  
AC177837.499.51%pos 129901 (R-)  
CH201-262F22 AC177837.4100%pos 92693 (F+)
CH201-264I19 AC177837.4100%pos 92842 (F+)
CH201-268K5 AC177837.499.63%pos 92278 (F-)
CH201-28O1 AC200137.599.84%pos 166080 (F-)
CH201-387K3 AC200137.599.44%pos 125794 (F+)
CH201-401J1 AC177837.499.22%pos 82981 (F-)
CH201-401L5 AC177837.499.59%pos 82442 (F-)
 AC177837.4100%pos 82888 (F-)
CH201-408B19AC200137.5100%pos 50501 (R-)  
CH201-410O16AC177837.4100%pos 90822 (R+)  
CH201-433G5AC200137.5100%pos 40933 (R-)  
CH201-445N19 AC177837.499.85%pos 39037 (F+)
 AC177837.499.85%pos 47065 (F+)
CH201-454K10AC177837.4100%pos 93810 (R+)  
CH201-488L1AC177837.4100%pos 41230 (R-)  
AC177837.4100%pos 29386 (R+)  
AC177837.4100%pos 49258 (R-)  
CH201-515H6AC177837.4100%pos 29388 (R+)  
AC177837.4100%pos 41231 (R-)  
AC177837.4100%pos 49259 (R-)  
CH201-529H10 AC177837.4100%pos 184343 (F+)
 AC177837.4100%pos 184370 (F+)
 AC177837.498.8%pos 184396 (F+)
CH201-535P15 AC177837.4100%pos 71285 (F+)
 AC177837.4100%pos 73025 (F+)
CH201-54L9 AC200137.599.85%pos 172857 (F+)
 AC200137.5100%pos 172766 (F+)
 AC177837.499.85%pos 118 (F+)
 AC177837.4100%pos 27 (F+)
CH201-566G16 AC177837.499.77%pos 134673 (F-)
 AC177837.4100%pos 134751 (F-)
CH201-575L9AC177837.499.86%pos 73528 (R+)  
CH201-66L3AC177837.4100%pos 74918 (R-)  
ZMMBBb-165H5AC200137.598.75%pos 162764 (R+)  
ZMMBBb-174N12AC200137.599.15%pos 34947 (R+)  
ZMMBBb-194A6AC200137.598.46%pos 169975 (R+) AC177837.499%pos 144580 (F-)
ZMMBBb-195B8AC200137.599.56%pos 161569 (R+)  
ZMMBBb-219I20 AC200137.599.7%pos 106850 (F+)
ZMMBBb-251A2AC200137.598.78%pos 169281 (R-)  
ZMMBBb-260K21AC177837.499.62%pos 73741 (R-) AC200137.599.46%pos 96373 (F+)
ZMMBBb-28P8AC200137.597.34%pos 96396 (R+) AC177837.499.6%pos 75891 (F-)
ZMMBBb-330M22 AC200137.599.4%pos 96377 (F+)
ZMMBBb-409A6AC177837.499.03%pos 29340 (R-)  
AC177837.499.03%pos 49191 (R+)  
AC177837.499.03%pos 41163 (R+)  
ZMMBBb-42F4AC200137.598.61%pos 169937 (R+) AC177837.498.63%pos 121343 (F-)
ZMMBBb-456E23AC200137.598.04%pos 96904 (R+)  
ZMMBBb-480B15 AC200137.598.81%pos 125251 (F-)
ZMMBBb-509B10 AC200137.599.39%pos 102112 (F-)
ZMMBBb-542B15AC200137.598.94%pos 96805 (R+)  
ZMMBBb-554G9AC177837.498.22%pos 58381 (R-) AC200137.597.09%pos 126228 (F+)
ZMMBBb-560O16AC200137.598.48%pos 163655 (R-)  
ZMMBBb-576L12 AC200137.599.23%pos 162425 (F-)
ZMMBBb-623M24AC200137.5100%pos 125840 (R-)  
ZMMBBb-92G19 AC200137.597.92%pos 171902 (F+)

down arrow Fosmid Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
Z_AI-1019B14AC200137.5100%pos 104986 (R+) AC200137.599.62%pos 162392 (F-)
Z_AI-1079A19AC177837.499.49%pos 189459 (R-)  
Z_AI-1238P24 AC200137.5100%pos 95160 (F-)
Z_AI-1249D1 AC200137.599.86%pos 123222 (F-)
Z_AI-1249D16 AC200137.5100%pos 123231 (F-)
Z_AI-1270K10AC200137.599.87%pos 168500 (R+)  
Z_AI-1302G1 AC177837.4100%pos 84532 (F-)
Z_AI-1394P20 AC200137.598.92%pos 47087 (F+)
Z_AI-1397L10 AC177837.4100%pos 61201 (F-)
Z_AI-17G13 AC200137.5100%pos 36161 (F-)
Z_AI-22E13 AC177837.4100%pos 188315 (F-)
Z_AI-259D1AC177837.499.69%pos 124880 (R-) AC177837.4100%pos 91424 (F+)
Z_AI-264D11AC200137.599.69%pos 127564 (R-)  
Z_AI-337O10 AC177837.4100%pos 128349 (F+)
Z_AI-339E8AC200137.599.09%pos 127506 (R-)  
Z_AI-412E10 AC177837.498.39%pos 42371 (F+)
Z_AI-465A12AC200137.5100%pos 83223 (R-)  
Z_AI-544F19 AC177837.499.78%pos 91200 (F-)
Z_AI-560M1AC200137.5100%pos 161434 (R+)  
Z_AI-573N8AC177837.499.62%pos 133717 (R-)  
Z_AI-588A15AC200137.599.33%pos 36524 (R+)  
Z_AI-626I5 AC200137.599.72%pos 110753 (F-)
Z_AI-656M23AC200137.5100%pos 169130 (R+)  
Z_AI-692K4AC177837.4100%pos 45226 (R-) AC177837.4100%pos 74681 (F-)
Z_AI-703O1AC200137.5100%pos 174912 (R-)  
AC177837.4100%pos 2173 (R-)  
Z_AI-706D3AC177837.4100%pos 134975 (R-)  
Z_AI-729G3AC177837.4100%pos 123466 (R-) AC177837.4100%pos 93063 (F+)
Z_AI-73K8AC200137.5100%pos 166185 (R+) AC177837.499.64%pos 39582 (F+)
 AC177837.499.64%pos 47610 (F+)
Z_AI-816C2 AC177837.498.42%pos 1190 (F+)
 AC200137.598.42%pos 173929 (F+)
Z_AI-845L23AC200137.597.26%pos 174817 (R-)  
AC177837.497.26%pos 2078 (R-)  
Z_AI-879D10AC200137.598.74%pos 165530 (R-)  
AC200137.5100%pos 165222 (R-)  
Z_AI-925A4AC177837.4100%pos 87018 (R-)  
Z_AI-927E3AC177837.499.44%pos 115562 (R-) AC177837.4100%pos 79137 (F+)
Z_AI-942G24AC200137.5100%pos 103558 (R-) AC200137.599.18%pos 123523 (F+)
Z_AI-984D16 AC177837.4100%pos 92951 (F+)

down arrow Repeats
acc start stop repeat id strand name family class