Alignment last updated: 12/19/2014 15:59:44

Join Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

Alignment for AC194004.4 and AC177947.2

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AC194004.4 Zea mays chromosome 1 clone CH201-538O19, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces [htgs_limited_order]

Length: 175,079 bp

AC177947.2 Zea mays chromosome 1 clone CH201-102N13, *** SEQUENCING IN PROGRESS *** [htgs_limited_order]

Length: 182,633 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

Alignment 1
Align ID: 116366
Total Length: 7136
Aligned Length: 7128
Percent Identity: 99.6493
Number of Gaps: 8
Number of Mismatches: 25
Source: CtgOverlap Seq-Align
Valid Switchpoint: true (A)

Switch Points

Type	Point1	Point2	Orient1	Orient2	Curator	Comment	Time	Id	Alignment	Releases
A	175079	7129	+	+	chenhc	Taxid 4577 chrom 1 Primary assembly	2014-12-19 15:59:44.340	120773	116366

Alignment 1 of 1

 AC194004.4 : + : 167944..175079
 AC177947.2 : + : 1..7128
 Mismatches = 25, Gaps = 8, Length = 7136
 Percent identity = 99.65%
 Score = 1.299e+04 bits (7033), Expect = 0
  7 BAC and 1 Fosmid bridging clones.
  7 BAC and 1 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AC194004.4 >167944  gaattcggccgggggtgcggtgcggggctttgcgtcggccacgcggctgcggccctgcgg 168003 
AC177947.2 >1       ............................................................ 60     

AC194004.4 >168004  gaaagcgagggtgatttgagccttttgacctcgtcgcgtccggcggcggggtggcgacga 168063 
AC177947.2 >61      ............................................................ 120    

AC194004.4 >168064  gcgggcggagccttggagcgtgctctgaatcttggggccggccggccggagagagagaga 168123 
AC177947.2 >121     ............................................................ 180    

AC194004.4 >168124  gtgtgtgtcgcgtcctcgctcaatgtgaaaacatcaaacattgcgatgtattgctcggta 168183 
AC177947.2 >181     ............................................................ 240    

AC194004.4 >168184  atcagtagtaacaggagatgtgaaagtgtgttacagcggcgcgggtgaccgaccactcac 168243 
AC177947.2 >241     ............................................................ 300    

AC194004.4 >168244  tgccatgtctgtaagctgccgccgtgacatcatccatgcccggcaaggcggcaacctgta 168303 
AC177947.2 >301     ............................................................ 360    

AC194004.4 >168304  tgcaattttaaattccagctaattttgttattaatatagatggtgttaaatttatcttgg 168363 
AC177947.2 >361     ............................................................ 420    

AC194004.4 >168364  aaggctattctttcaatcacggttcacgacgtgtatgtcaggacaacgagattagcttgt 168423 
AC177947.2 >421     ............................................................ 480    

AC194004.4 >168424  ttgtttctatacttttttttcgatttccaatataaatagatggctgatataaaaagtaac 168483 
AC177947.2 >481     ............................................................ 540    

AC194004.4 >168484  tagcacaggaggagcccaacttcttatgtctaaggtcagcgggagtttcttggattaaat 168543 
AC177947.2 >541     ............................................................ 600    

AC194004.4 >168544  aacaatatataagtggtagcttggctgtaatctgatatgtagacctgttagaaatatagg 168603 
AC177947.2 >601     ............................................................ 660    

AC194004.4 >168604  catttttcgtattattttaattccataaattaacattatgatgataacatataaaatata 168663 
AC177947.2 >661     ............................................................ 720    

AC194004.4 >168664  tttaatcatagaaatcattatctcaaatatatccataacaatatggatcaagagaacatg 168723 
AC177947.2 >721     ............................................................ 780    

AC194004.4 >168724  aaacatatgaatcatataaatataataagcaaataaacatgaaacatgtattattatgga 168783 
AC177947.2 >781     ............................................................ 840    

AC194004.4 >168784  acaactgaaattaaacagatagcgacataaacagcatgactgtaaaattaagacaaacag 168843 
AC177947.2 >841     ............................................................ 900    

AC194004.4 >168844  atttatcatattactagtatgatcaggcatcagacatgtcatgatataatacgacaaaac 168903 
AC177947.2 >901     ............................................................ 960    

AC194004.4 >168904  agattggataaatttatggctataaataaaacagcaggtatgaacatatataatttgcag 168963 
AC177947.2 >961     ............................................................ 1020   

AC194004.4 >168964  aatgaaaaacagtaaggagatgaattgatcataccctgccatgcgctccgaggatctaga 169023 
AC177947.2 >1021    ............................................................ 1080   

AC194004.4 >169024  tccttgtccaacttcacttgtcatgtcagcaggaagaagactttgggcagtcgcgtagac 169083 
AC177947.2 >1081    ............................................................ 1140   

AC194004.4 >169084  gctccccaaaaacctaattgccgatccctcgtgcaaggtctcgaacggcaagggctccgg 169143 
AC177947.2 >1141    ............................................................ 1200   

AC194004.4 >169144  aggcacctgctctctcgcttctctgtgcgcgcagagtcacgagatggaaataccctcact 169203 
AC177947.2 >1201    ............................................................ 1260   

AC194004.4 >169204  cggctgctggactgtgttctgaaattgtttgctcgcgtgtaccgaatgacagggatgctc 169263 
AC177947.2 >1261    ............................................................ 1320   

AC194004.4 >169264  ctctatttaacctctcgcagagggaagctgaaggagaaaggtcgccgagtcatgccaaga 169323 
AC177947.2 >1321    ............................................................ 1380   

AC194004.4 >169324  gtcggccagctctagccgagttatgccatgagtcggccagctctcgccgagtcacgccat 169383 
AC177947.2 >1381    ............................................................ 1440   

AC194004.4 >169384  aagtcggcagctgaaggagaagggtcactcggctggctgacgaagagacagggtcactcg 169443 
AC177947.2 >1441    ............................................................ 1500   

AC194004.4 >169444  gcagacgaagagacagggtcactcggctgacgtacgcggttagtgagtgctaaaaattaa 169503 
AC177947.2 >1501    ............................................................ 1560   

AC194004.4 >169504  cacaaccacaccacgcccgctcgcccgcccgcccgcctgcctcgccacgccacgcccggc 169563 
AC177947.2 >1561    ............................................................ 1620   

AC194004.4 >169564  ccggccggcggcggcggcggcgcgcgcgcgcgcgtgtggcacgcccttgtccatttcttg 169623 
AC177947.2 >1621    ............................................................ 1680   

AC194004.4 >169624  acttctcaagttaagtggaataaatcccaccatataagtcaaggcaaaagacccttggac 169683 
AC177947.2 >1681    ............................................................ 1740   

AC194004.4 >169684  ttccaatgtggtactattggtattctccaccgttacacaccatagagtttattcaataaa 169743 
AC177947.2 >1741    ............................................................ 1800   

AC194004.4 >169744  tgggccaagcccataaaagatccaacaatccccaccaaactctagggtttgtaatgatga 169803 
AC177947.2 >1801    ............................................................ 1860   

AC194004.4 >169804  agtatcagaatcacaatcctttgatataccagtgtttcgatggagactgttaagttgaac 169863 
AC177947.2 >1861    ............................................................ 1920   

AC194004.4 >169864  atccatctagaataagagtttcactcattcacaactgaacaatggactatgccttgaatt 169923 
AC177947.2 >1921    ............................................................ 1980   

AC194004.4 >169924  gacagttttgtgcgaaataaagatttcactcaaaacctttgctgatacttaggctgcaaa 169983 
AC177947.2 >1981    ....................-..-.........................-.......... 2037   

AC194004.4 >169984  aggggtattcccgctgttttagaaggcatataagtccacactttagtgcctttcatgagt 170043 
AC177947.2 >2038    .-.................-....-..........-........................ 2093   

AC194004.4 >170044  attttagggattacccaagtcgcatacactgtgactagcagactgattcaaatgggggaa 170103 
AC177947.2 >2094    .-...................c....g..............t....c...t..a..t.t. 2152   

AC194004.4 >170104  ttcttcgaaagaaggtttgtaagacaacatttcccccttattaggctcctggaataccat 170163 
AC177947.2 >2153    ...c..ag....t.t......g........c..a..t....a..a...t........at. 2212   

AC194004.4 >170164  aaggtaaaaaccctcctgccttacagataggaaagatgtgcatcagaaatgagttaaaga 170223 
AC177947.2 >2213    ............a............................................... 2272   

AC194004.4 >170224  agggatcttttctcacaatttactcctagcttgtttctccactctacttcacgggatctc 170283 
AC177947.2 >2273    ..........c........c........................................ 2332   

AC194004.4 >170284  cgatcacatagagcaggttaccactagagtagatctcacatgggtctcatacccatttcc 170343 
AC177947.2 >2333    ............................................................ 2392   

AC194004.4 >170344  ctcgatgcactttctatcacattgcgtgatagacccttagtgaattgatctgccagatta 170403 
AC177947.2 >2393    ............................................................ 2452   

AC194004.4 >170404  ttcgatgtgtggacataatccacagtaataactccggagtttttcaactttctgacagat 170463 
AC177947.2 >2453    ............................................................ 2512   

AC194004.4 >170464  ttcaatctcctcttaacatgccttgtagacttcatgttattcctagaactgttaaccttt 170523 
AC177947.2 >2513    ............................................................ 2572   

AC194004.4 >170524  gtaatcaccgtttggttgtcacagttcatggaaatagccggtatcggtttttcaactacc 170583 
AC177947.2 >2573    ............................................................ 2632   

AC194004.4 >170584  ggtaagtccaataggaaatcacgaagccactcggcctcagccccagcagtgtctaatgct 170643 
AC177947.2 >2633    ............................................................ 2692   

AC194004.4 >170644  gcgagttctgcttccattgtagacttcgttaagatagtctgcttgcaagacttccaggaa 170703 
AC177947.2 >2693    ............................................................ 2752   

AC194004.4 >170704  acagcgccacctccaaacagaaacacatatccgcttgtggcataaagctcatcagcatca 170763 
AC177947.2 >2753    ............................................................ 2812   

AC194004.4 >170764  gaaatccagttggcatcacaatagccttccaacacttttgggtttctggtataatgaata 170823 
AC177947.2 >2813    ............................................................ 2872   

AC194004.4 >170824  ccgtatgtcatagtacctttcaaatactgcaacactctctcaagagcacgccagtgatca 170883 
AC177947.2 >2873    ............................................................ 2932   

AC194004.4 >170884  tctcctggtttcgacacaaaccggcttagcttactcacagcataagagatgtctggcctt 170943 
AC177947.2 >2933    ............................................................ 2992   

AC194004.4 >170944  gttgcacttgcaaggtacatgagcgagccaatgatctgggagtatgtcaattgatccctt 171003 
AC177947.2 >2993    ............................................................ 3052   

AC194004.4 >171004  gctattctccgattctttcttaatagcacactggggtcataaggtgttggagcaggatca 171063 
AC177947.2 >3053    ............................................................ 3112   

AC194004.4 >171064  cagtcactaaaaccaaagcgactcaataccttttccacataatgggattgtaacagagtt 171123 
AC177947.2 >3113    ............................................................ 3172   

AC194004.4 >171124  accccaccatcagcttctctaacaagcttgatgtttagaatgacatcagcctctcccaaa 171183 
AC177947.2 >3173    ............................................................ 3232   

AC194004.4 >171184  tctttcatctcgaaatttctcgatagaagatttttaacttcctcaatcacattgagattt 171243 
AC177947.2 >3233    ............................................................ 3292   

AC194004.4 >171244  gatccaaagatcaaaatgtcatcaacataaagacacagcataacagactcacccccacca 171303 
AC177947.2 >3293    ............................................................ 3352   

AC194004.4 >171304  taccgatagtatacacacgtgtcagattcatttacaacaaagccagttgttgtaagagta 171363 
AC177947.2 >3353    ............................................................ 3412   

AC194004.4 >171364  ttttcaaacttttcatgccattgcttaggtgcttgttttaggccatacaatgattttatc 171423 
AC177947.2 >3413    ............................................................ 3472   

AC194004.4 >171424  aacctgcacaccttgttctcttgaccatccgcaataaacccttctggctgatccatatag 171483 
AC177947.2 >3473    ............................................................ 3532   

AC194004.4 >171484  atctcctcatccaactctccatttaggaaagctgtcttaacatccatctgatgaatgata 171543 
AC177947.2 >3533    ............................................................ 3592   

AC194004.4 >171544  agaccataagaggctgccacggctattaatgtgcgaattgtagtcaatcgagccactggt 171603 
AC177947.2 >3593    ............................................................ 3652   

AC194004.4 >171604  gagtaggtatcaaagaaatcttcaccctccttttgggtatatcctttggccacaagcctt 171663 
AC177947.2 >3653    ............................................................ 3712   

AC194004.4 >171664  gccttgtacctctcaattgtaccatcaggcctaagctttttcttgaagatccatttgcaa 171723 
AC177947.2 >3713    ............................................................ 3772   

AC194004.4 >171724  cctataggttgacaaccataaggacggtccacgacctcccaagttccattagacataata 171783 
AC177947.2 >3773    ............................................................ 3832   

AC194004.4 >171784  gattctatctcactccttactgcttccttccataagtcagcatcaggagaggaatatgcc 171843 
AC177947.2 >3833    ............................................................ 3892   

AC194004.4 >171844  tcactaatggtagttggtgtgtcttccacaaggtacactataaagtcattaccaaaggat 171903 
AC177947.2 >3893    ............................................................ 3952   

AC194004.4 >171904  tttgcaaccctctgtctcttgctctttcgagtgactatagtgtcatcctcctcagggatg 171963 
AC177947.2 >3953    ............................................................ 4012   

AC194004.4 >171964  tgcacgtgagaatcctcagcatgatctaaaggaatcgacagttcgtgctcatggggaatt 172023 
AC177947.2 >4013    ............................................................ 4072   

AC194004.4 >172024  agtctcatgacttatatcactaggtgtattcttcataggaaactcattctcaaaaaatgt 172083 
AC177947.2 >4073    ............................................................ 4132   

AC194004.4 >172084  tgcgtctcttgattccatgatagtatcaacatacatatcaggcacatcagattttataat 172143 
AC177947.2 >4133    ............................................................ 4192   

AC194004.4 >172144  taagaacctatatccagtgctgtgaaaagagtacccaaggaatacacaatcaacagtttt 172203 
AC177947.2 >4193    ............................................................ 4252   

AC194004.4 >172204  aggcccaagtttacgctttttgttgattggcacattcactttagccaaacaaccccaagt 172263 
AC177947.2 >4253    ............................................................ 4312   

AC194004.4 >172264  gcgcaaatatgagagatttaatcttctcttttcccattcctcaaatggtgtgatctcttt 172323 
AC177947.2 >4313    ............................................................ 4372   

AC194004.4 >172324  gttctttgttggaactctattcaggacatgacatgctgtcaaaatcgcctcaccccacca 172383 
AC177947.2 >4373    ............................................................ 4432   

AC194004.4 >172384  tgccttggataatcccgctgtactcaacatggcattcaccaaatctgttagagtgcggtt 172443 
AC177947.2 >4433    ............................................................ 4492   

AC194004.4 >172444  tttcctttcagcaatcccattggattgtggtgagaatggcggtgtcctctcatgaataat 172503 
AC177947.2 >4493    ............................................................ 4552   

AC194004.4 >172504  accatgttccacacagaactcatcgaacacattagagaagtattctccacctcgatcaga 172563 
AC177947.2 >4553    ............................................................ 4612   

AC194004.4 >172564  ccttaaccgttttattttcctctcaagctggttctcaacttcagctttataggccttaaa 172623 
AC177947.2 >4613    ............................................................ 4672   

AC194004.4 >172624  ataattgaacgcttcatcttttgtttttaagagatacacataacaaaatctagtggagtc 172683 
AC177947.2 >4673    ............................................................ 4732   

AC194004.4 >172684  atctataaaagtgagaaagtatcttttaccacctttggttaaaattccattcatctcaca 172743 
AC177947.2 >4733    ............................................................ 4792   

AC194004.4 >172744  cagatcagaatgaacaagttctagaggtgccaaactcctcgcctcagcagccttgtgagg 172803 
AC177947.2 >4793    ............................................................ 4852   

AC194004.4 >172804  cttgcgaggttgttttgattcaacacacacatggcacttagactttttgaccaagttaaa 172863 
AC177947.2 >4853    ............................................................ 4912   

AC194004.4 >172864  tttaggaattaaatttatatttgctaaccgcataagacagccaaagcttgcatgacaaaa 172923 
AC177947.2 >4913    ............................................................ 4972   

AC194004.4 >172924  acgtgaatgccataaatctgactcatcagaaaaatgaacagaattcaccagtttattaca 172983 
AC177947.2 >4973    ............................................................ 5032   

AC194004.4 >172984  cacatcatgcagtgataagcggaacaagcctccgcaatcatatcctttaccaacaaaagt 173043 
AC177947.2 >5033    ............................................................ 5092   

AC194004.4 >173044  accatgtttcgacacaacacatttattggactcaagaacaactttatatccatctcgaca 173103 
AC177947.2 >5093    ............................................................ 5152   

AC194004.4 >173104  tagcatcgaagcgctaacgagattcttcttgatagagggcacatgctgcacgctcttcaa 173163 
AC177947.2 >5153    ............................................................ 5212   

AC194004.4 >173164  tggcaccgtctttcccgaagtaaacttcagaatgaccgtaccaacaccaagaacatgagc 173223 
AC177947.2 >5213    ............................................................ 5272   

AC194004.4 >173224  acgcgacccatttcccatcaacaaggcgccagacctcccgacctgataggaagtgaacat 173283 
AC177947.2 >5273    ............................................................ 5332   

AC194004.4 >173284  agaggcatcagcacacacatgaatgtttgcaccactgtccatccaccactcaggtgaatt 173343 
AC177947.2 >5333    ............................................................ 5392   

AC194004.4 >173344  acagactgaaagaacaaatggtaaagaattaccatacccagatgttccttcttcagtttc 173403 
AC177947.2 >5393    ............................................................ 5452   

AC194004.4 >173404  agtggttacaacattagctgatttcttgtcttgagtgaacttgcgatcagggcactctct 173463 
AC177947.2 >5453    ............................................................ 5512   

AC194004.4 >173464  tgcccaatgttgatcactgccacagacaaagcatcctccctttcccttgttattgttgtt 173523 
AC177947.2 >5513    ............................................................ 5572   

AC194004.4 >173524  cttctttttaaactgtgctgtatgaacatgtttatttgcattctcttgtttgttctggtt 173583 
AC177947.2 >5573    ............................................................ 5632   

AC194004.4 >173584  tttcttcttgttaaacttgcgaaagtttctcttctgcaccacattagcagtagaggtctc 173643 
AC177947.2 >5633    ............................................................ 5692   

AC194004.4 >173644  aacaccttttccactgtcctttgttctagccctttcctcaacatcaagagtaccaatgag 173703 
AC177947.2 >5693    ............................................................ 5752   

AC194004.4 >173704  ctcttccacattgaactcttgtctcttatgtttgagagaggtagcaaagtccttccaaga 173763 
AC177947.2 >5753    ............................................................ 5812   

AC194004.4 >173764  aggtggcaacttggcgattataccgccagccacaaacttgtcaggcaaaggacaaggaaa 173823 
AC177947.2 >5813    ............................................................ 5872   

AC194004.4 >173824  aagttcgagttccttagctagtgcttgaaactcatgagcctgttccactacagatcggtt 173883 
AC177947.2 >5873    ............................................................ 5932   

AC194004.4 >173884  ctcaaccatcttgtagtcatacagctgctccatgagatacagctcgctaccagcgtcagt 173943 
AC177947.2 >5933    ............................................................ 5992   

AC194004.4 >173944  aactccaaactttccaacaagagcatcccacagctctttccccgtgggaaggatgatata 174003 
AC177947.2 >5993    ............................................................ 6052   

AC194004.4 >174004  gcttttctggaattttgtgtcaagtgcgctaatcactgcacctcgaaagaggttgtcttc 174063 
AC177947.2 >6053    ............................................................ 6112   

AC194004.4 >174064  agccttaaacttagcctcatcctcaggaggtaagttgacaggcttgccctcagcggcatg 174123 
AC177947.2 >6113    ............................................................ 6172   

AC194004.4 >174124  aaaacaagacattgcagttagccacaattctatcttagctttccatatcaagaagttttt 174183 
AC177947.2 >6173    ............................................................ 6232   

AC194004.4 >174184  accatcaaaaggatcaggctttagcacagcagcaaaacctctgacagaaaaatgcctaac 174243 
AC177947.2 >6233    ............................................................ 6292   

AC194004.4 >174244  attaggtttttggattgttagaaatataggcattttccgtattattttaattccataaat 174303 
AC177947.2 >6293    ............................................................ 6352   

AC194004.4 >174304  taacattatgatgatgacatataaaatatgtttaatcatagaaatcattatctcaaatat 174363 
AC177947.2 >6353    ............................................................ 6412   

AC194004.4 >174364  atccataacaatatggatcaagagaacatgaaacatatgaatcatataaatataataagc 174423 
AC177947.2 >6413    ............................................................ 6472   

AC194004.4 >174424  aaataaacatgaaacatgtattattatggaacaactgaaattaaacagatagcgacataa 174483 
AC177947.2 >6473    ............................................................ 6532   

AC194004.4 >174484  acagcatgactgtaaaattaagacaaacagatttatcatattactagtatgatcaggcat 174543 
AC177947.2 >6533    ............................................................ 6592   

AC194004.4 >174544  cagacatgtcatgatataatacgacaaaacagattggataaatttatggctataaataaa 174603 
AC177947.2 >6593    ............................................................ 6652   

AC194004.4 >174604  acagcaggtatgaacatatataatttgcagaatgaaaaacagtaaggagatgaattgatc 174663 
AC177947.2 >6653    ............................................................ 6712   

AC194004.4 >174664  ataccctgccatgcgctccgaggatctagatccttgtccaacttcacttgtcatgtcagc 174723 
AC177947.2 >6713    ............................................................ 6772   

AC194004.4 >174724  aggaagaagactttgggcagtcgcgtagacgctccccaaaaacctaattgccgatccctc 174783 
AC177947.2 >6773    ............................................................ 6832   

AC194004.4 >174784  gtgcaaggtctcgaacggcaagggctccggaggcacctgctctctcgcttctctgtgcgc 174843 
AC177947.2 >6833    ............................................................ 6892   

AC194004.4 >174844  gcagagtcacgagatggaaataccctcactcggctgctggactgtgttctgaaattgttt 174903 
AC177947.2 >6893    ............................................................ 6952   

AC194004.4 >174904  gctcgcgtgtaccgaatgacagggatgctcctctatttaacctctcgcagagggaagctg 174963 
AC177947.2 >6953    ............................................................ 7012   

AC194004.4 >174964  aaggagaaaggtcgccgagtcatgccaagagtcggccagctctagccgagttatgccatg 175023 
AC177947.2 >7013    ............................................................ 7072   

AC194004.4 >175024  agtcagccagctctcgccgagtcacgccataagtcggcagctgaaggagaaggatc 175079 
AC177947.2 >7073    ........................................................ 7128

Events

Type

Date

Whodid

Comment

295108

InitHasAlign

01/15/2014 17:15:50

cgi_chen

find_overlapId: find_overlap_app.cpp 404199 2013-06-20 22:08:27Z rafanovi $ built Aug  1 2013. Toolkit wrapper  using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib
Info: Blast Including ID: 112734911
Info: Running Blast Filter: 0
Info: Determined ID: gi|112734911 needs Merging.
Info: Blast Warning: Empty Query Set
Info: Determined ID: gi|112734911 needs Merging.
Info: Blast Warning: Empty Query Set
Info: Determined ID: gi|112734911 needs Merging.
Info: Best Rank: 3 in  for 112734911 of 1
Info:  NG returned 1 alignments

tpf_solo for TPF_updated_1_v2

381425

CreateSwitchPt

12/19/2014 15:59:44

chenhc

tpf_m_BuilderId: t Toolkit wrapper version: built Nov 13 2014 using /home/boukn/code/toolkit/c++/GCC481-ReleaseMT64/lib

BAC Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
CH201-102N13	AC177947.2	99.28%	pos 182204 (R-)	AC177947.2	99.7%	pos 113 (F+)
				AC194004.4	100%	pos 168130 (F+)
				AC177947.2	100%	pos 187 (F+)
				AC194004.4	99.7%	pos 168056 (F+)
CH201-105F16				AC177947.2	99.26%	pos 47011 (F-)
CH201-105F16				AC177947.2	100%	pos 47006 (F-)
CH201-11P4				AC177947.2	100%	pos 182328 (F-)
CH201-135I24	AC177947.2	99.86%	pos 61 (R+)	AC177947.2	100%	pos 169596 (F-)
CH201-135I24	AC194004.4	99.86%	pos 168004 (R+)	AC177947.2	100%	pos 170028 (F-)
CH201-144B15	AC177947.2	100%	pos 28006 (R+)
CH201-151F4	AC177947.2	100%	pos 60935 (R-)
CH201-158K5	AC177947.2	99.84%	pos 47166 (R-)
CH201-15D1				AC177947.2	98.73%	pos 60730 (F-)
CH201-16H6	AC194004.4	100%	pos 36545 (R-)
CH201-205G7				AC194004.4	99.39%	pos 166172 (F-)
CH201-218F24				AC194004.4	100%	pos 168459 (F+)
CH201-218F24				AC177947.2	100%	pos 516 (F+)
CH201-230G19	AC177947.2	100%	pos 181859 (R-)	AC177947.2	99.57%	pos 123 (F+)
CH201-230G19				AC194004.4	99.57%	pos 168066 (F+)
CH201-233F22	AC177947.2	99.65%	pos 148608 (R-)	AC194004.4	100%	pos 148758 (F+)
CH201-245J3	AC177947.2	99.85%	pos 137157 (R-)	AC194004.4	99.67%	pos 144081 (F+)
CH201-276G4	AC177947.2	100%	pos 61170 (R-)
CH201-276G4	AC177947.2	100%	pos 60695 (R-)
CH201-278O7				AC177947.2	99.5%	pos 26006 (F+)
CH201-318A20	AC177947.2	100%	pos 173932 (R+)
CH201-318I8	AC177947.2	99.38%	pos 173955 (R+)
CH201-318I8	AC177947.2	100%	pos 173853 (R+)
CH201-320K6	AC194004.4	99.2%	pos 48012 (R+)	AC177947.2	99.45%	pos 58033 (F-)
CH201-320K6	AC194004.4	100%	pos 48026 (R+)	AC177947.2	100%	pos 58560 (F-)
CH201-337L7	AC194004.4	99.3%	pos 33746 (R+)
CH201-371B7	AC194004.4	100%	pos 50871 (R+)
CH201-38B24	AC194004.4	100%	pos 49456 (R-)
CH201-38B24	AC194004.4	99.85%	pos 49460 (R-)
CH201-38O19				AC177947.2	100%	pos 29703 (F+)
CH201-426H6	AC177947.2	100%	pos 131005 (R-)
CH201-426K12	AC177947.2	100%	pos 51039 (R-)
CH201-439F23	AC194004.4	99.85%	pos 159125 (R+)
CH201-465A20				AC177947.2	100%	pos 44247 (F+)
CH201-484D1	AC177947.2	100%	pos 61924 (R-)
CH201-491C12				AC177947.2	100%	pos 43230 (F+)
CH201-491C12				AC177947.2	98.31%	pos 43296 (F+)
CH201-537F11	AC177947.2	100%	pos 51040 (R-)
CH201-537F11	AC177947.2	100%	pos 50608 (R-)
CH201-538O19	AC177947.2	100%	pos 6728 (R-)	AC194004.4	100%	pos 80 (F+)
	AC194004.4	100%	pos 168687 (R-)	AC194004.4	100%	pos 196 (F+)
	AC194004.4	100%	pos 174679 (R-)	AC194004.4	99.71%	pos 112 (F+)
	AC177947.2	100%	pos 744 (R-)
	AC177947.2	100%	pos 6406 (R-)
	AC194004.4	100%	pos 174357 (R-)
CH201-547M12	AC177947.2	99.13%	pos 58602 (R-)
CH201-547P9	AC177947.2	100%	pos 58562 (R-)
CH201-570A11	AC177947.2	99.85%	pos 124710 (R-)
CH201-570A11	AC177947.2	100%	pos 125108 (R-)
CH201-570E11	AC177947.2	100%	pos 13456 (R+)	AC177947.2	99.31%	pos 144124 (F-)
CH201-570E11	AC177947.2	100%	pos 13622 (R+)	AC177947.2	99.86%	pos 143639 (F-)
CH201-574B10	AC177947.2	100%	pos 61872 (R-)
CH201-575F15	AC177947.2	100%	pos 74251 (R+)
CH201-72I21				AC177947.2	99.33%	pos 47410 (F-)
				AC177947.2	100%	pos 47411 (F-)
				AC177947.2	100%	pos 47519 (F-)
ZMMBBb-11H23	AC177947.2	99.51%	pos 141641 (R+)
ZMMBBb-143A13	AC177947.2	99.22%	pos 15855 (R+)	AC177947.2	99.03%	pos 140292 (F-)
ZMMBBb-160D17	AC177947.2	100%	pos 36746 (R+)
ZMMBBb-170L5				AC177947.2	98.26%	pos 98643 (F+)
ZMMBBb-180D9				AC194004.4	99.43%	pos 16381 (F-)
ZMMBBb-260B24	AC194004.4	99.65%	pos 137364 (R-)	AC194004.4	99.05%	pos 6740 (F+)
ZMMBBb-360M9	AC177947.2	97.67%	pos 62152 (R+)
ZMMBBb-3O2				AC194004.4	100%	pos 49406 (F+)
ZMMBBb-414B1				AC177947.2	98.64%	pos 137207 (F-)
ZMMBBb-429A12	AC194004.4	97.75%	pos 8424 (R+)
ZMMBBb-453E6	AC177947.2	97.27%	pos 20150 (R+)	AC177947.2	98.15%	pos 138017 (F-)
ZMMBBb-536L17				AC194004.4	97.97%	pos 12966 (F+)
ZMMBBb-537N16	AC177947.2	98.68%	pos 15295 (R-)
ZMMBBb-616N19				AC194004.4	98.89%	pos 48289 (F-)
ZMMBBb-625A20				AC177947.2	99.63%	pos 60966 (F+)
ZMMBBb-631L16	AC177947.2	98.51%	pos 31146 (R+)
ZMMBBb-89I23				AC194004.4	97.71%	pos 48386 (F-)

Fosmid Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
Z_AI-1045D14	AC194004.4	100%	pos 88719 (R-)
Z_AI-1070N4				AC177947.2	98.68%	pos 55478 (F+)
Z_AI-1070N4				AC177947.2	98.68%	pos 63871 (F+)
Z_AI-1072E9				AC177947.2	99.61%	pos 66226 (F+)
Z_AI-1120K5	AC194004.4	99.71%	pos 136293 (R-)
Z_AI-1138M15	AC194004.4	99.47%	pos 113449 (R+)
Z_AI-1195F8	AC177947.2	100%	pos 523 (R+)
Z_AI-1195F8	AC194004.4	100%	pos 168466 (R+)
Z_AI-1213D24	AC194004.4	97.83%	pos 51462 (R-)
Z_AI-1223O23				AC177947.2	100%	pos 75954 (F+)
Z_AI-1243I13				AC177947.2	100%	pos 29635 (F-)
Z_AI-1245J5	AC194004.4	99.1%	pos 13286 (R-)
Z_AI-1296H3	AC194004.4	100%	pos 88461 (R-)
Z_AI-1317O8	AC177947.2	97.3%	pos 48255 (R-)
Z_AI-1344C7				AC177947.2	100%	pos 140013 (F-)
Z_AI-1353C11	AC177947.2	99.67%	pos 8584 (R+)
Z_AI-1401A6	AC177947.2	99.85%	pos 138097 (R-)
Z_AI-1402F5				AC194004.4	99.86%	pos 14366 (F+)
Z_AI-1404E12	AC177947.2	100%	pos 23051 (R-)	AC194004.4	99.53%	pos 161221 (F+)
Z_AI-1474B19	AC177947.2	98.57%	pos 60856 (R-)
Z_AI-1482B5				AC194004.4	100%	pos 14354 (F-)
Z_AI-1482J14	AC194004.4	100%	pos 61286 (R+)
Z_AI-255D14				AC177947.2	100%	pos 180783 (F+)
Z_AI-328B14	AC177947.2	100%	pos 128988 (R-)	AC177947.2	100%	pos 103602 (F+)
Z_AI-340G8				AC177947.2	100%	pos 125606 (F-)
Z_AI-400G15	AC177947.2	100%	pos 61840 (R-)
Z_AI-508L4	AC177947.2	100%	pos 178364 (R+)
Z_AI-522P19				AC177947.2	99.87%	pos 128058 (F-)
Z_AI-528H21				AC194004.4	98.44%	pos 49117 (F+)
Z_AI-537B11				AC194004.4	100%	pos 2691 (F-)
Z_AI-545A13				AC177947.2	98.82%	pos 136120 (F+)
Z_AI-558F11				AC194004.4	100%	pos 155038 (F+)
Z_AI-568M10	AC194004.4	100%	pos 164920 (R-)	AC194004.4	99.87%	pos 134895 (F+)
Z_AI-570D14	AC177947.2	99.85%	pos 108280 (R+)	AC177947.2	100%	pos 140599 (F-)
Z_AI-581F13	AC177947.2	100%	pos 38246 (R-)	AC177947.2	99.88%	pos 7240 (F+)
Z_AI-603J8	AC177947.2	100%	pos 108924 (R+)	AC177947.2	99.86%	pos 147549 (F-)
Z_AI-608O11	AC194004.4	99.82%	pos 87710 (R-)
Z_AI-636M19				AC194004.4	99.73%	pos 53148 (F+)
Z_AI-640A4	AC194004.4	99.83%	pos 46797 (R+)
Z_AI-648P5				AC177947.2	100%	pos 50088 (F+)
Z_AI-660E4	AC194004.4	100%	pos 136261 (R-)
Z_AI-665F22	AC194004.4	99.24%	pos 12952 (R-)
Z_AI-684F8	AC177947.2	100%	pos 9317 (R+)
Z_AI-704J15	AC194004.4	100%	pos 168998 (R+)
Z_AI-704J15	AC177947.2	100%	pos 1055 (R+)
Z_AI-733G21	AC177947.2	100%	pos 27636 (R+)
Z_AI-770L22	AC177947.2	100%	pos 104514 (R+)	AC177947.2	100%	pos 134119 (F-)
Z_AI-926A11	AC177947.2	100%	pos 47290 (R-)	AC177947.2	100%	pos 11025 (F+)
Z_AI-975N9				AC177947.2	99.7%	pos 52388 (F+)

Repeats

acc	start	stop	repeat id	strand	name	family	class

Join Legend

Curator Links

Alignment for AC194004.4 and AC177947.2

Alignment Summary

Alignment 1 of 1