Alignment last updated: 01/15/2014 17:27:11

Join Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

Alignment for AC191546.4 and AC231618.3

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AC191546.4 Zea mays chromosome 1 clone CH201-417A10, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces [htgs_limited_order]

Length: 198,297 bp

AC231618.3 Zea mays chromosome 1 clone CH201-208E4; ZMMBBc0208E04, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces [predraft]

Length: 145,146 bp

Alignment Summary

Join evaluation: red (half-dovetail of >50bp)

Alignment count: 1

Go to Endhit Table

Alignment 1
Align ID: 116925
Total Length: 14290
Aligned Length: 14271
Percent Identity: 99.965
Number of Gaps: 19
Number of Mismatches: 5
Second Tail: 25994bp
Source: CtgOverlap Seq-Align

Alignment 1 of 1

 AC191546.4 : + : 184023..198297
 AC231618.3 : - : 119152..104867
 Mismatches = 5, Gaps = 19, Length = 14290
 Percent identity = 99.96%
 Score = 2.624e+04 bits (14208), Expect = 0
  0 BAC and 1 Fosmid bridging clones.
  0 BAC and 0 Fosmid concordant clones.
  0 BAC and 1 Fosmid discordant clones.

AC191546.4 >184023  actgccagcatgcacacttagcactaaaactgtcatgggggtccactagagcttgttcaa 184082 
AC231618.3 <119152  ............................................................ 119093 

AC191546.4 >184083  tccatacgtggtagtcatgagtcttcatccctaagactcgaatagtagataagttcaccc 184142 
AC231618.3 <119092  ............................................................ 119033 

AC191546.4 >184143  ctactcagattagttgcatacccatcagagaacattaacatcttgatccactctagtact 184202 
AC231618.3 <119032  ............................................................ 118973 

AC191546.4 >184203  tctttcctctgggccttgcttaggacaaaatcagccttaggcattctccatgtctctcca 184262 
AC231618.3 <118972  ............................................................ 118913 

AC191546.4 >184263  ctacaaggcagcttcatttcttggattggtctatcacataacgctgtcagattcactctt 184322 
AC231618.3 <118912  ............................................................ 118853 

AC191546.4 >184323  gccttacgttatcctttgacttatcaggaatgtccatgattgttgcccaaaatgcatcgg 184382 
AC231618.3 <118852  ............................................................ 118793 

AC191546.4 >184383  cgacattcttttcaatgtgcatcacgttaatgttgcatggaaggagaaggtaatcataat 184442 
AC231618.3 <118792  ............................................................ 118733 

AC191546.4 >184443  aggggagtcgagtcaagcctgacttatgggtccacatatgttgctcaccatatcccacaa 184502 
AC231618.3 <118732  ............................................................ 118673 

AC191546.4 >184503  aaccaccttatggattgaccataagaccatctatctgttagtgaactttggcaccagtca 184562 
AC231618.3 <118672  ............................................................ 118613 

AC191546.4 >184563  tcattgtaggtgggcagtgtgtcactacgacacctttcataaagttcttgatgtctagtt 184622 
AC231618.3 <118612  ............................................................ 118553 

AC191546.4 >184623  ggaatgcatggtcaagagggagaaattgtcgatgcttatcaaacgatgaatattttccac 184682 
AC231618.3 <118552  ............................................................ 118493 

AC191546.4 >184683  ccttattcaaccaaatgaacctaagagcttccttgcaaagtgagcatgggaacttaccgt 184742 
AC231618.3 <118492  ............................................................ 118433 

AC191546.4 >184743  gaacacaccaggtggagaatagcccatacgcggagaactcatgcatggagtactgctacc 184802 
AC231618.3 <118432  ............................................................ 118373 

AC191546.4 >184803  aaacattgtgttttgaagttcttctttgtagctcgatcgtatgtccatacctcttcctcc 184862 
AC231618.3 <118372  ............................................................ 118313 

AC191546.4 >184863  caagcactgaccaattcatcaatcacaggctccatttgcagacccattttattccccggg 184922 
AC231618.3 <118312  ............................................................ 118253 

AC191546.4 >184923  agtccagaaattatcaacgacaagaacatgttctgtcattgaaagcataggccaggggag 184982 
AC231618.3 <118252  ............................................................ 118193 

AC191546.4 >184983  attgagggggataacaaacatgtgccaacatgtgtatggtgtagccatcagtccataagg 185042 
AC231618.3 <118192  ............................................................ 118133 

AC191546.4 >185043  attgaacccatctatggccagcgcaacacatacattacgtgcctcttcgactttcttatg 185102 
AC231618.3 <118132  ............................................................ 118073 

AC191546.4 >185103  gtgaatggcatcaaagtgggtccatgattcaccaatagatgcatgtaccatcttgtcaag 185162 
AC231618.3 <118072  ............................................................ 118013 

AC191546.4 >185163  attgtatcgtttgccttttttgttccatgtcatctatttcgcgaattccttgatcatgta 185222 
AC231618.3 <118012  ............................................................ 117953 

AC191546.4 >185223  taactactggatccttggtatgaacagaagatggcgtaggattgtcacggggatgtcgag 185282 
AC231618.3 <117952  ............................................................ 117893 

AC191546.4 >185283  ctacctcttctgtccatcactagagtctacatccatgaacctagacgatttacacttcgg 185342 
AC231618.3 <117892  ............................................................ 117833 

AC191546.4 >185343  acaacactttgccttcatgcattctttcctaaataggatgcagctcttcggacaagcatg 185402 
AC231618.3 <117832  ............................................................ 117773 

AC191546.4 >185403  tatttgctcatacgtcatcttgagtgcatgaagcagtttctatgccttgtacatgttctt 185462 
AC231618.3 <117772  ............................................................ 117713 

AC191546.4 >185463  tggtagaacatgatcctctagaagcaggctgctaataattgtcaacaaaccatcaaaggc 185522 
AC231618.3 <117712  ............................................................ 117653 

AC191546.4 >185523  gtcttgactcaggctatactgcaacttcaacgccattatacgtccaatgcaatctagttc 185582 
AC231618.3 <117652  ............................................................ 117593 

AC191546.4 >185583  agaaacatttgtctggccatgaaggggtttctgtgtcgcgtcaaacatatagtagaatgc 185642 
AC231618.3 <117592  ............................................................ 117533 

AC191546.4 >185643  ctttgtggtcacctctagctcatccttcgtaaatccttcgatgatctgtgcctcatgata 185702 
AC231618.3 <117532  ............................................................ 117473 

AC191546.4 >185703  gtcgttcaacatgtctgctaccccggcatcagcatcataatcctcgacacgttatctcac 185762 
AC231618.3 <117472  ............................................................ 117413 

AC191546.4 >185763  cacctcctctcttgtacaatgtgcttcaccatggaaggtccatcgggtatagtctggcat 185822 
AC231618.3 <117412  ............................................................ 117353 

AC191546.4 >185823  aaatccattcttccaaatatgttctcccatgaccttctttgtttgtcttttcctatttgc 185882 
AC231618.3 <117352  .................................a.......................... 117293 

AC191546.4 >185883  acatttgttgcacgaacatgggacaagactggctcctttagcggctttgccaaatgttag 185942 
AC231618.3 <117292  ............................................................ 117233 

AC191546.4 >185943  ttccatgaaagcatcaacctttgtaatccatttaggggtgacatcatcccttcttctgtg 186002 
AC231618.3 <117232  ............................................................ 117173 

AC191546.4 >186003  gcccatgtacatccactcacggtcctccatcctctaatatattagcacagagtaatataa 186062 
AC231618.3 <117172  ............................................................ 117113 

AC191546.4 >186063  acctcttcctcaaggaacactacactcgtaccttctaataggtaagcataggtcctaatc 186122 
AC231618.3 <117112  ............................................................ 117053 

AC191546.4 >186123  ccacccatagttatatagatggggttaatggatcctaatgattcctctgccatgagctag 186182 
AC231618.3 <117052  ............................................................ 116993 

AC191546.4 >186183  aggattgactttgacatgtagtccatcgctcccatgaactcaatgtccagaggctgacac 186242 
AC231618.3 <116992  ............................................................ 116933 

AC191546.4 >186243  atactatgtaggatcacaataaggacgcttcctgcgaggaccattaacaagagggatgct 186302 
AC231618.3 <116932  ............................................................ 116873 

AC191546.4 >186303  cctccaaagattttggctcacacattaatgagtgagatgtggacgagacacttgtcgtct 186362 
AC231618.3 <116872  ............................................................ 116813 

AC191546.4 >186363  tgagttgagggtcaggcgaggcggaaccctttcatcaaagattgggtggactaagatggt 186422 
AC231618.3 <116812  ............................................................ 116753 

AC191546.4 >186423  tgaagattcatcatctcttgctaatcttgtgccacatcatatctgttatattcaccccaa 186482 
AC231618.3 <116752  ............................................................ 116693 

AC191546.4 >186483  caatgcttcatattttgtagcatccactaggatgcattagaagagacaaccgaacctatg 186542 
AC231618.3 <116692  ............................................................ 116633 

AC191546.4 >186543  aagaccaaggaataattaccaaaacaagggaggctagctagtccatgccctcaaggaaat 186602 
AC231618.3 <116632  ............................................................ 116573 

AC191546.4 >186603  caacgtcaaaacattggaggcttaagaaatccttagcccaatcaacttcggggcgaccta 186662 
AC231618.3 <116572  ............................................................ 116513 

AC191546.4 >186663  cattattcgctccatgctcatgacctccatagatgactaaagtccatacgagtgaatcac 186722 
AC231618.3 <116512  ............................................................ 116453 

AC191546.4 >186723  gatcatatagagtcttctaatgaagttaggtgtgacaacaatgtgatatatgtggatagt 186782 
AC231618.3 <116452  ............................................................ 116393 

AC191546.4 >186783  tttccctacttttgtagaaggttaaactcgattaggtactcgaggaggcttaatcctatc 186842 
AC231618.3 <116392  ............................................................ 116333 

AC191546.4 >186843  aacatggctaagtatgctagaaagaaagaccctaattagtggatctgatgttactcatcc 186902 
AC231618.3 <116332  ............................................................ 116273 

AC191546.4 >186903  accatgaactaggctaaagtagtcgatgatattaaggaagtctacttcccattgatactc 186962 
AC231618.3 <116272  ............................................................ 116213 

AC191546.4 >186963  gaggctactttgctgacttgattgaaacaactcaaaatggactctatcaacaattcaccc 187022 
AC231618.3 <116212  ............................................................ 116153 

AC191546.4 >187023  atgccaaccaaaaaaaatggagaacttctagggcgcatgggctcgatcatctagtcaaat 187082 
AC231618.3 <116152  ............................................................ 116093 

AC191546.4 >187083  gtgatgaccttcagaattgcaagcagaaagatgattaaagcatatatgactattatagcc 187142 
AC231618.3 <116092  ............................................................ 116033 

AC191546.4 >187143  atttcaccgacattcgctacatattggtggatgtatcagaaaaaaacatcatcgactact 187202 
AC231618.3 <116032  ............................................................ 115973 

AC191546.4 >187203  tcaatgatgggcttagagatacatgcctctactaagatttcatcagaaattggctaagaa 187262 
AC231618.3 <115972  ............................................................ 115913 

AC191546.4 >187263  ccataggtgagttccaagacatgggcgtgtttggttcggcttttttctggccagcttatc 187322 
AC231618.3 <115912  ............................................................ 115853 

AC191546.4 >187323  tgaaaagctggctgtggggaaaagctggctgttgggaaaagctggtggttagaatttagg 187382 
AC231618.3 <115852  ............................................................ 115793 

AC191546.4 >187383  tgtttggttcgccagctgtgcagaaaagctgatcgtcagaatctacgtgtttggatacag 187442 
AC231618.3 <115792  ............................................................ 115733 

AC191546.4 >187443  attctcaagttgcagattctgttcgaacaaacgataaaatgaaacccataacgcagataa 187502 
AC231618.3 <115732  ............................................................ 115673 

AC191546.4 >187503  agttcattacaaaataattagtggagttcattacatcataagtaccgttacaattgcact 187562 
AC231618.3 <115672  ............................................................ 115613 

AC191546.4 >187563  aagtcaactacgccactaatgcatttgcaattgcatctcgaaattcactcatgtctaact 187622 
AC231618.3 <115612  ............................................................ 115553 

AC191546.4 >187623  catcagatgtgctagtactactctcacctgcaggtagatcatgacttaggctattaggtc 187682 
AC231618.3 <115552  ............................................................ 115493 

AC191546.4 >187683  ctacttcatcaaaatctctatcgtgtagagcactatctctaatgaagttatggagcgtca 187742 
AC231618.3 <115492  ............................................................ 115433 

AC191546.4 >187743  tacatgcaataattatcttcgattgtttctcaagcgaaaatgaagggagacttaatagaa 187802 
AC231618.3 <115432  ............................................................ 115373 

AC191546.4 >187803  ttctccacttcatttttagcaccccaaatgatcgcttaataacatttcgtagggatgagt 187862 
AC231618.3 <115372  ............................................................ 115313 

AC191546.4 >187863  gcgcatagttgaatacttctttactcccaataggttgcctcgcattttgccattccgtaa 187922 
AC231618.3 <115312  ............................................................ 115253 

AC191546.4 >187923  tgtggtacttctgccccttataaggtgcaaggtacccctttctatttggataacccgaat 187982 
AC231618.3 <115252  ............................................................ 115193 

AC191546.4 >187983  cgacaagatagtatttacctgcacaaactcaaaatacaaatgttacgtacatgtgatata 188042 
AC231618.3 <115192  ............................................................ 115133 

AC191546.4 >188043  aaatagtaatgtattgtacaaatgtacaaaatatttatataccttccggtggatggggga 188102 
AC231618.3 <115132  ............................................................ 115073 

AC191546.4 >188103  acctgtccgcataagttattaaagtatcctgtagtactcttgtgtcatgaacggaacctg 188162 
AC231618.3 <115072  ............................................................ 115013 

AC191546.4 >188163  gccagcctgtgaccacaaatgtgaacctcatatcgaagtcacatacggccattacattct 188222 
AC231618.3 <115012  ............................................................ 114953 

AC191546.4 >188223  gcgacgtgtaaccgtgtcggccaatatatttcgcttgttccgaagccgggactgccgctg 188282 
AC231618.3 <114952  ............................................................ 114893 

AC191546.4 >188283  ggaagtgactaccatctattgcgcctatgcaatccttgaagtgtggccaaaacctcgcct 188342 
AC231618.3 <114892  ............................................................ 114833 

AC191546.4 >188343  ctcgcaaacgatgatgaatctcgacaaaatgtgggtcttttggcttgattgtgtcagatg 188402 
AC231618.3 <114832  ............................................................ 114773 

AC191546.4 >188403  acatcttataaagtgcattaaggacatcactatacttgcggctaattgtttccaatgagt 188462 
AC231618.3 <114772  ............................................................ 114713 

AC191546.4 >188463  gaccaaatttatttctgatctgcctaaacgattgtggacccccacatgcccacaagaata 188522 
AC231618.3 <114712  ............................................................ 114653 

AC191546.4 >188523  tgccaagagcttccatagtactgacacccctgcttggaagcagaccataattttgtacca 188582 
AC231618.3 <114652  ............................................................ 114593 

AC191546.4 >188583  acgtgtcatgcaatcgtcgaaaaacagttcttcgcatccgaaacatgtcaaaacagtcgt 188642 
AC231618.3 <114592  ............................................................ 114533 

AC191546.4 >188643  tactaatctccaacgttctttgaacccattgaataccagattcgaccaatgttcttctag 188702 
AC231618.3 <114532  ............................................................ 114473 

AC191546.4 >188703  gagcccgactgaaatgcctgccccaaatgtcaacagcataaagagcaacaagcatttctc 188762 
AC231618.3 <114472  ............................................................ 114413 

AC191546.4 >188763  catctgtttcgtcattagatgtgtgtgcatccatttcatcatcagatgtgtgtgcatcca 188822 
AC231618.3 <114412  ............................................................ 114353 

AC191546.4 >188823  tttcatcatcatatgtgtgttcataagggtcacacatctgcatggagacaaccaagagcc 188882 
AC231618.3 <114352  ............................................................ 114293 

AC191546.4 >188883  acaatttcatatgcaaccacagtttaaaaaacacatattaaagaagccgaacagtgtaca 188942 
AC231618.3 <114292  ............................................................ 114233 

AC191546.4 >188943  ggcatttgaagttcacagattcacatagctcacaaagttacaactctgattattctgata 189002 
AC231618.3 <114232  ............................................................ 114173 

AC191546.4 >189003  catgttcaactcgaatttgtggaaaattgtttgaaagcgaaatgatactaacaaaaactg 189062 
AC231618.3 <114172  ............................................................ 114113 

AC191546.4 >189063  acacgacatgactcattaagcagacacaactaacatactaaacatataagcctcagttgt 189122 
AC231618.3 <114112  ............................................................ 114053 

AC191546.4 >189123  ccgaccagcagcatgtaggtggactttttgaacatctaatgaaacgacatgcctgatgaa 189182 
AC231618.3 <114052  ............................................................ 113993 

AC191546.4 >189183  aaacacaaccaacgataatagtaaacatgtacgactctgttgtcggacgtccaccagcta 189242 
AC231618.3 <113992  ............................................................ 113933 

AC191546.4 >189243  agtgctctttttggtttctaactcgtaagcattgcgaagccaagcgattcttccttcttt 189302 
AC231618.3 <113932  ............................................................ 113873 

AC191546.4 >189303  tgtctccaagtttgcaaaaacatctctatacttcttatgaatcagaagatgcgtcgcaaa 189362 
AC231618.3 <113872  ............................................................ 113813 

AC191546.4 >189363  caaatgtagttcgctcccttcaggtgatccatcttccttgacttgtagcaactgcttttt 189422 
AC231618.3 <113812  ............................................................ 113753 

AC191546.4 >189423  aatctctaatcgaaccgggtcattgtcagaagaggtaatggacttgttagtggtcaatga 189482 
AC231618.3 <113752  ............................................................ 113693 

AC191546.4 >189483  gcgggactcaaaagcctccacaagtcttttcatgtactcttccctcgaatcttttttctt 189542 
AC231618.3 <113692  ............................................................ 113633 

AC191546.4 >189543  ctttggttttggggaatcatggcgcatcttacgcttcccagtagcatttgtgcaggggtc 189602 
AC231618.3 <113632  ............................................................ 113573 

AC191546.4 >189603  aggtgtgctgttttcacccccacctaaagtgtattccaaatgatcatcagaagatgaatt 189662 
AC231618.3 <113572  ............................................................ 113513 

AC191546.4 >189663  agcatcctccacgccaggaaccagggttctttcatttgtgcacacaatgggtccaaacat 189722 
AC231618.3 <113512  ............................................................ 113453 

AC191546.4 >189723  aacctttagctcgtcctcattctctagggggctgttttgaacataatacaacctggcatt 189782 
AC231618.3 <113452  ...................................a........................ 113393 

AC191546.4 >189783  gcctgcaccaattggtagttcctactttagatggccaatactaatgttagtctacgaaaa 189842 
AC231618.3 <113392  ............................................................ 113333 

AC191546.4 >189843  aaaagatgaacttacttcattttgcttggcccaccactcatctggcgcactgattgaacc 189902 
AC231618.3 <113332  ............................................................ 113273 

AC191546.4 >189903  agtatgagggtctcgaccaagacctgtagccctttcattaagagttttccactgggtgaa 189962 
AC231618.3 <113272  ............................................................ 113213 

AC191546.4 >189963  cattctcttcaacgaatcccacctattctttatttgatccctggtgtaagtgcgaccagt 190022 
AC231618.3 <113212  ............................................................ 113153 

AC191546.4 >190023  gcgttccttaaacttccttatgaggttagcatacccttctgcatttaggaattgttgtgg 190082 
AC231618.3 <113152  ............................................................ 113093 

AC191546.4 >190083  cctgttccgagcattgacctcttctacacaaatttctgtgtaaatttttgttgctctact 190142 
AC231618.3 <113092  ............................................................ 113033 

AC191546.4 >190143  atcccactttgcaatcactttgtcggacttgtccatctagtgcataacaagtatatagtt 190202 
AC231618.3 <113032  ............................................................ 112973 

AC191546.4 >190203  ttcaacatacttagtactgttctccgattaaaaacaacaaaaaagatgaggtcaacaata 190262 
AC231618.3 <112972  ............................................................ 112913 

AC191546.4 >190263  tactggccatattatgttcagataataccataagtactaagattccaatttgcttaatta 190322 
AC231618.3 <112912  ............................................................ 112853 

AC191546.4 >190323  cacaacgagaaccttaaataaactgctactggacagaaaatgacagcgaacacatttaca 190382 
AC231618.3 <112852  ............................................................ 112793 

AC191546.4 >190383  tcagcccattaaccaaaagaacaaactgattccctttttccctacgcccttagtacacaa 190442 
AC231618.3 <112792  ............................................................ 112733 

AC191546.4 >190443  aagctaagggacttcaaccctgtcattaaaacacctaactccaaggttcactcccttcta 190502 
AC231618.3 <112732  ............................................................ 112673 

AC191546.4 >190503  ccttaaacatcattgtcattaaacgaaggcatctgatcggagtcatattcaactccccag 190562 
AC231618.3 <112672  ............................................................ 112613 

AC191546.4 >190563  aagttttggaaatgctccgcaaagtcccaatgtggagtcaggtcgtcgtcagatgggggt 190622 
AC231618.3 <112612  ............................................................ 112553 

AC191546.4 >190623  ggtgacgacaaggtagaaggttcataggtgctgtcaaccgggatgttaaagttgttcacg 190682 
AC231618.3 <112552  ............................................................ 112493 

AC191546.4 >190683  atgtccaaatgctcttgcaacaccagagagtcttgctccagcatgcaagctatctcctcc 190742 
AC231618.3 <112492  ............................................................ 112433 

AC191546.4 >190743  aaagctacacgaagtttggtagcatcaaatgaggtcaacccgcgtccaggacggattgtt 190802 
AC231618.3 <112432  ............................................................ 112373 

AC191546.4 >190803  tccctcgctacggaaaatatcttgtccgaaatctcctgcatccgtccaattgccttgtca 190862 
AC231618.3 <112372  ............................................................ 112313 

AC191546.4 >190863  gctatggagtctgctgaatccatctgatgtggattaggtcgttagtataccagacatggg 190922 
AC231618.3 <112312  ............................................................ 112253 

AC191546.4 >190923  gactatctacacaaattaggcgtacttacatgtccactgcctaggctggtgacaaaggag 190982 
AC231618.3 <112252  ............................................................ 112193 

AC191546.4 >190983  ggtacaactacgactgattactagtctcctatgcactaataacaatacgaagacacgttg 191042 
AC231618.3 <112192  ............................................................ 112133 

AC191546.4 >191043  atgcagtactcagtacatggacacacattgaaagaaagcattaacaattaatagggctat 191102 
AC231618.3 <112132  ............................................................ 112073 

AC191546.4 >191103  tcacattaccttggctgaagtggatcttggaacctcagacgaataaccagagttgatgcg 191162 
AC231618.3 <112072  ............................................................ 112013 

AC191546.4 >191163  gaaatctgaagggtactcctgtttcgttcggcttctgggatatgaagaacaaaaacgtta 191222 
AC231618.3 <112012  ............................................................ 111953 

AC191546.4 >191223  gtacatcgatggtaatcagttctgatgtactgaaaaa-ctggacatggtgtcaatctact 191281 
AC231618.3 <111952  .....................................a...................... 111893 

AC191546.4 >191282  acaatccagttattgaaatgtattattgcgtcggcagctaacaaacaaaaatagggtaca 191341 
AC231618.3 <111892  ............................................................ 111833 

AC191546.4 >191342  agtaccaaattaacaaataatagtgcaaaacacagtgcaatggtttcccctaaaccgtga 191401 
AC231618.3 <111832  ............................................................ 111773 

AC191546.4 >191402  ccaacaatcgttgaacaccatctctgcatcacgttgctaggagtcaataaaggggggata 191461 
AC231618.3 <111772  ............................................................ 111713 

AC191546.4 >191462  aacatcttaaccacggacgtagatgcaacctaaaccctaatcatgacatggggatgcaac 191521 
AC231618.3 <111712  ............................................................ 111653 

AC191546.4 >191522  ggatccggaaaagcacaatacgagaatgagatgggggagacgaagatggtacctgcgaag 191581 
AC231618.3 <111652  ............................................................ 111593 

AC191546.4 >191582  acgccgagatgcaaaagaggggaggagtccaaggttgacgatggcagtgggagttgacga 191641 
AC231618.3 <111592  ............................................................ 111533 

AC191546.4 >191642  cggagttgcggctcctcggtcaaaaccctagcgcagtgaagggtgacggagccatcaacg 191701 
AC231618.3 <111532  ............................................................ 111473 

AC191546.4 >191702  accgcggcaatggtcacggcccttttcgaaacgaggcagccgggggaggaggacgagcgg 191761 
AC231618.3 <111472  ............................................................ 111413 

AC191546.4 >191762  atacgaaacggaatgcaaatgaaccgcgtacctgaggaggaatgcggcggatgagcaaat 191821 
AC231618.3 <111412  ............................................................ 111353 

AC191546.4 >191822  gggagtgtggtcgtggcccccgagccgctgcagcggaggcggcggcggcggtccttgcga 191881 
AC231618.3 <111352  ............................................................ 111293 

AC191546.4 >191882  ggggagagacctctgaggtgcgggcgcggtggaaaccctatcgcgagaccgcggcttcta 191941 
AC231618.3 <111292  ............................................................ 111233 

AC191546.4 >191942  gaggaagcctgcttcgcccggcttttggtttcatgtgacgcgcgcggcttctgtgcgaag 192001 
AC231618.3 <111232  ............................................................ 111173 

AC191546.4 >192002  cgcggccgtgagaagctgcccagaatctgggcgtttggccgtggcttctgcttctggcgg 192061 
AC231618.3 <111172  ............................................................ 111113 

AC191546.4 >192062  ccagaagccgcccagaatctgaaccaaacaggcacatggtcgacgagtgcacaaacaaag 192121 
AC231618.3 <111112  ............................................................ 111053 

AC191546.4 >192122  aagactggatatcgacaagtacaatgaccaaaaccacagagacaatgcattgctctactt 192181 
AC231618.3 <111052  ............................................................ 110993 

AC191546.4 >192182  cggtgataatttattctataaaattggtgacctacacttcactgaggcatacgatgcgat 192241 
AC231618.3 <110992  ............................................................ 110933 

AC191546.4 >192242  caaacttgatggttttttatttgcatgaactttggtgtgtaattgaacatcttatttata 192301 
AC231618.3 <110932  ............................................................ 110873 

AC191546.4 >192302  ttgatttgatttaaactattatggtttgtattgacttgataagtgaaaatgatctcattg 192361 
AC231618.3 <110872  ............................................................ 110813 

AC191546.4 >192362  taatatgcgagcatagaataggtacataaaaaccaagttagaataaaaaacccatagaat 192421 
AC231618.3 <110812  ............................................................ 110753 

AC191546.4 >192422  aattttttttaaaaaaataggctttatttattcttatttgggtacattgagactggagat 192481 
AC231618.3 <110752  ............................................................ 110693 

AC191546.4 >192482  gcgatgcccgcgctatgactccatcgaagttacgttatcagttagtcctggatatatacg 192541 
AC231618.3 <110692  ............................................................ 110633 

AC191546.4 >192542  tcgtccctaccgatgtttttgtttttaacctattttctaacaaaaattacatttagaccc 192601 
AC231618.3 <110632  ............................................................ 110573 

AC191546.4 >192602  ctggatgacttatttccggatttggacccagcgctaggcaccgtagcctatggcgccgag 192661 
AC231618.3 <110572  ............................................................ 110513 

AC191546.4 >192662  gtaacacagctcggtggcatagcctttggcgctgagctctgatgtggcggtggcggctcg 192721 
AC231618.3 <110512  ............................................................ 110453 

AC191546.4 >192722  gagcggctagggctagcgtggcgccgacgcggcctcctagctcggcgccacagatcttgg 192781 
AC231618.3 <110452  ............................................................ 110393 

AC191546.4 >192782  cgctgagctaggaagtcctataaatcggtcgttctgttggccgagaggagctcatttctc 192841 
AC231618.3 <110392  ............................................................ 110333 

AC191546.4 >192842  aacttcccctccattcaaaccttcttcaaaagcggccagatttgagttggaatactttgt 192901 
AC231618.3 <110332  ............................................................ 110273 

AC191546.4 >192902  ataccaaggtatggtgtctcactgattcgttttgtatattgggttgtaatttttcgatta 192961 
AC231618.3 <110272  ............................................................ 110213 

AC191546.4 >192962  ttagttttgattgttgctcctaggatatatagtatagttcatatgatgactacaatttat 193021 
AC231618.3 <110212  ............................................................ 110153 

AC191546.4 >193022  ttgatagtttgtgaaatccaattatacagtctattaggtacttgtgttaatatattgtcg 193081 
AC231618.3 <110152  ............................................................ 110093 

AC191546.4 >193082  gggaccataattaggggtaccctcaaggctcctaattctcagctggtaacccccatcaaa 193141 
AC231618.3 <110092  ............................................................ 110033 

AC191546.4 >193142  ataaagctgcaaaggcctgatgggtgcgactaagttagggatcagtccattcgagcgact 193201 
AC231618.3 <110032  ............................................................ 109973 

AC191546.4 >193202  cgatcacgcctcgcccgagcctagcctcggacaagggcagccgaccccggaggatttccg 193261 
AC231618.3 <109972  ............................................................ 109913 

AC191546.4 >193262  tctcgcccgaggcccccctccaacggcggatatatttccggctcgcccgaggccctgcct 193321 
AC231618.3 <109912  ............................................................ 109853 

AC191546.4 >193322  tcgctaagaagcaaccctgaccaaatcgccgcaccaaccgaccaaatcgcaggagcattt 193381 
AC231618.3 <109852  -........................................................... 109794 

AC191546.4 >193382  aatgcaaaggtggcctgacacctttatcctgacgcgcgcccccagccggcagagccgaag 193441 
AC231618.3 <109793  ............................................................ 109734 

AC191546.4 >193442  tgaccgccgtcacttcgccgctccactgaccggcctgacagaaggacagcaccgcctgcg 193501 
AC231618.3 <109733  ............................................................ 109674 

AC191546.4 >193502  ccacttcgactgcggtgccacttgacagagtgagactgacaggcagtcaggcccagccga 193561 
AC231618.3 <109673  ............................................................ 109614 

AC191546.4 >193562  aggcaccataggaagctccgcttcgcccgacccagggctcgaactcgggctaagtcccgg 193621 
AC231618.3 <109613  ............................................................ 109554 

AC191546.4 >193622  aagacggcgaactccgcttcacccgacccagggctcggactcgggctaagtcccggaaga 193681 
AC231618.3 <109553  ............................................................ 109494 

AC191546.4 >193682  cggtgaactccactccgcccgacccagggctcggactcaggctaagtcccggaagacggc 193741 
AC231618.3 <109493  ............................................................ 109434 

AC191546.4 >193742  gaactccgctccgcccgacccagggctcggactcgggctaagtcccggaagacggcgaac 193801 
AC231618.3 <109433  ............................................................ 109374 

AC191546.4 >193802  tccgctccgcccgacccagggctcggactcgggctaagtcctggaagacggcgaa-ctcc 193860 
AC231618.3 <109373  .......................................................a.... 109314 

AC191546.4 >193861  gctccgcccgacctagggctcggactcggg-ctaagtcccagaagacgg-cgaactccgc 193918 
AC231618.3 <109313  ..............................g..................g.......... 109254 

AC191546.4 >193919  -tccgccc-g-acccagggctcggactcaggctcagcccc-aggagac-gacgaactccg 193973 
AC231618.3 <109253  c.......c.a.............................c.......g........... 109194 

AC191546.4 >193974  cttcgcccgacccc-agggctcggactccgccctggcctcagccgacggcctccgcctcg 194032 
AC231618.3 <109193  ..............c............................................. 109134 

AC191546.4 >194033  ccc-gacccaggggctcggactcgacctcggccacggaagacagactcgacctcggcttc 194091 
AC231618.3 <109133  ...c........................................................ 109074 

AC191546.4 >194092  ggaggagcttccacatcgcccaacctagggcgcaggccagccacgtcgacaggaggcgcc 194151 
AC231618.3 <109073  ............................................................ 109014 

AC191546.4 >194152  atcatcgccctaccccgagctgacacgggccgcaggaaacaagaccggcgtcccatctcg 194211 
AC231618.3 <109013  ............................................................ 108954 

AC191546.4 >194212  ctcgctctgccagataggcaatgatggcgccccccatactctgtgacgacggcggctctc 194271 
AC231618.3 <108953  ............................................................ 108894 

AC191546.4 >194272  ggcccccttacggaagcaggaggacgtcagcaaggactcaaccgctccgacagctgtccc 194331 
AC231618.3 <108893  ............................................................ 108834 

AC191546.4 >194332  tccgccag-gctccatcgctcctccgacggccacgacatcacaccagctgggtgccaaa- 194389 
AC231618.3 <108833  ........a..................................................a 108774 

AC191546.4 >194390  gtctctccggctgccacaatggcatgtacttagggcgctagctctcctccgctagacacg 194449 
AC231618.3 <108773  ............................................................ 108714 

AC191546.4 >194450  tagcactctgctacacccccattgtacacctggatcccctccttacgcctataaaaggaa 194509 
AC231618.3 <108713  ............................................................ 108654 

AC191546.4 >194510  ggaccagggccctcttagagagggtgggccgcgcggggacgaggacgagataggcgctcg 194569 
AC231618.3 <108653  ............................................................ 108594 

AC191546.4 >194570  cttggggccgctcgctccctctcccgcgtggacgcttgtaaccccctactgcaagcgcac 194629 
AC231618.3 <108593  ............................................................ 108534 

AC191546.4 >194630  ccgacctgggcgcgggacgaacacgaaggccgcgggattcccacctctctcacgccggtc 194689 
AC231618.3 <108533  ............................................................ 108474 

AC191546.4 >194690  tccggccgcctcgctctccccccttcgcgctcgccctcgcgctcgacccatctgagctgg 194749 
AC231618.3 <108473  ............................................................ 108414 

AC191546.4 >194750  ggcacgcggcgacattcacttgtcggcccagggaccccccggtctcgaaacgccgacagt 194809 
AC231618.3 <108413  ....................-....................................... 108355 

AC191546.4 >194810  tggcgcgccaggtaggggcttgctgcgtgttgacgaacagcttcccatcaagctccagat 194869 
AC231618.3 <108354  ................................t..g........................ 108295 

AC191546.4 >194870  gggcagtctccagcaacctctcc-aacccgggacggtgctccatttcgggagtcttgagt 194928 
AC231618.3 <108294  .......................c.................................... 108235 

AC191546.4 >194929  tcatgtccctcgacggcagctacgacatgatactccttccaccgccgcgcgacaacgaca 194988 
AC231618.3 <108234  ............................................................ 108175 

AC191546.4 >194989  atggtggccgacagcccgcccgccggtggcggaatcgacgacgtcttccccgtgtggtgg 195048 
AC231618.3 <108174  ............................................................ 108115 

AC191546.4 >195049  aagaacaaccttcgagctcatcctgcccttcccccgccgacggaggggaaggcagggcga 195108 
AC231618.3 <108114  ............................................................ 108055 

AC191546.4 >195109  ccaaggccaagcaggaggcagcgcctcgtcgactgtcgagcgagtcgacagtcccggcac 195168 
AC231618.3 <108054  ............................................................ 107995 

AC191546.4 >195169  cccaacgaggggcgcactgggtatcgacttcgcgcttgagacgaagacgagcgccgtctc 195228 
AC231618.3 <107994  ............................................................ 107935 

AC191546.4 >195229  cccgcgacacgccaatcccgagcaagcggacgacgccagcgcgctcgcggagaacttgct 195288 
AC231618.3 <107934  ............................................................ 107875 

AC191546.4 >195289  ggatgtcaccctcgtacctgagacgacggtgcagtcagtccctgacgtgactttatcgcc 195348 
AC231618.3 <107874  ............................................................ 107815 

AC191546.4 >195349  gctcgtcgaccaagaggtaccgaccgattcccatcccacgtcatttggattcagcctcaa 195408 
AC231618.3 <107814  ............................................................ 107755 

AC191546.4 >195409  cccgcctagcgaccgtgctttggcgggcgctctcgtagaggcaagtccaaaccctctggg 195468 
AC231618.3 <107754  ............................................................ 107695 

AC191546.4 >195469  gtttcgcatgcggtcgccttgggaccggctgacggacgtctcgacctacgggccctctgg 195528 
AC231618.3 <107694  ............................................................ 107635 

AC191546.4 >195529  gtccgaggaagacgacgagcccagcatctgttgggatttctctggacttggcaaccccag 195588 
AC231618.3 <107634  ............................................................ 107575 

AC191546.4 >195589  tgccatgcgggacttcatgaccgcatgtgactactgcctctccgactgttccgacggtag 195648 
AC231618.3 <107574  ............................................................ 107515 

AC191546.4 >195649  ccgcagcctgggcgacgagggctgcggcccaagccgcgaatgtttccacgtcgatctagg 195708 
AC231618.3 <107514  ............................................................ 107455 

AC191546.4 >195709  gggtccctccgaaggcaatcatctcggcatgccggaggacgatgacctccctaggccggc 195768 
AC231618.3 <107454  ............................................................ 107395 

AC191546.4 >195769  gccccgcgttgacatcccacgggagctagctgtggtccccattcaggcggggggccatga 195828 
AC231618.3 <107394  ............................................................ 107335 

AC191546.4 >195829  cccacagctcgggcaaatccgcggagtgcaggccaggctcgacgagggagcaggagcgct 195888 
AC231618.3 <107334  ............................................................ 107275 

AC191546.4 >195889  tgagccgatccgccgggatgtcgggcaggcatgggcgggccaacccccggccggagaaat 195948 
AC231618.3 <107274  ............................................................ 107215 

AC191546.4 >195949  tcgtcatccgccccagggcttccagcaccgcgtcgccaacgacgtcagggacagggccgc 196008 
AC231618.3 <107214  .......................................................-...- 107157 

AC191546.4 >196009  ccacccgcatctagtggggtcggccagaacctggctacagcagcaatgcttctccgcgcg 196068 
AC231618.3 <107156  ............................................................ 107097 

AC191546.4 >196069  atgccggagccatcaaccaccgagggccggcgaatccagggggaactcaagaatctcctg 196128 
AC231618.3 <107096  ............................................................ 107037 

AC191546.4 >196129  gaaggcgccgcggtccgacgggccgagagctctgcctcccgaaggcagggatacccctcg 196188 
AC231618.3 <107036  ............................................................ 106977 

AC191546.4 >196189  gaacctcatgccgcgacttcccgattcatgcgggaagcctcggtctacacaggacgcacg 196248 
AC231618.3 <106976  ............................................................ 106917 

AC191546.4 >196249  cgcaacaccgcgcctgcggccccgggccgcctcggcaacgagcaccatcaccgcgaccgt 196308 
AC231618.3 <106916  ............................................................ 106857 

AC191546.4 >196309  cgggctcacctcgacgagagggtgcgccgaggctaccaccccagacgtgggggacgctac 196368 
AC231618.3 <106856  ............................................................ 106797 

AC191546.4 >196369  gacagcggggaggatcggagtccctcgcccgaaccgcccggtccacaggccttcagccgg 196428 
AC231618.3 <106796  ............................................................ 106737 

AC191546.4 >196429  ccatccgacgggcaccgttcccgacccggttccgacccccgactactatcacaaagtact 196488 
AC231618.3 <106736  ............................................................ 106677 

AC191546.4 >196489  cgggggagacgagaccagaactgtggctcgcggactaccgtctggcctgccaactgggtg 196548 
AC231618.3 <106676  ............................................................ 106617 

AC191546.4 >196549  gaatggacgatgacaacctcatcatccgcaacctccccctgttcctctccgacaccgctc 196608 
AC231618.3 <106616  ............................................................ 106557 

AC191546.4 >196609  gcgcctggttggagcacctgcctccggggcagatctccaactgggatgacctagttcaag 196668 
AC231618.3 <106556  ............................................................ 106497 

AC191546.4 >196669  ccttcgccggcaatttccagggcacgtacgtgcgccccgggaattccagggatctccgaa 196728 
AC231618.3 <106496  ...............................................t............ 106437 

AC191546.4 >196729  gctgccggcagcaggcgggagagtccctccgggactacatccggcgattctcgaagcagc 196788 
AC231618.3 <106436  ............................................................ 106377 

AC191546.4 >196789  gcaccgagttgcccaacatcaccgactcggatgtcatcggcgcgttcctcgccggcacca 196848 
AC231618.3 <106376  ............................................................ 106317 

AC191546.4 >196849  cctgccgcgacctagtgagcaagttgggtcgcaagacccccaccagggcgagcgagctga 196908 
AC231618.3 <106316  ............................................................ 106257 

AC191546.4 >196909  tggacatcgccaccaagttcgcctccggccaggaggcggtcgaggccatcttccgaaagg 196968 
AC231618.3 <106256  ............................................................ 106197 

AC191546.4 >196969  acaagcagccccagggccgcccatcggaagatgctcccgaggcgtcaactcagcgcggca 197028 
AC231618.3 <106196  ............................................................ 106137 

AC191546.4 >197029  ccaagaagaaaggcaagaagaagtcgcaagcgaaacacgacgccgccgacgcggaccttg 197088 
AC231618.3 <106136  ............................................................ 106077 

AC191546.4 >197089  tcgccgccgccgagtacaagaaccctcggaaaccccccagaggtgccaacctcttcgaca 197148 
AC231618.3 <106076  ............................................................ 106017 

AC191546.4 >197149  agatgctcaaggagtcgtgcccctatcaccaggggcccgtcaagcacacccttgaggagt 197208 
AC231618.3 <106016  ............................................................ 105957 

AC191546.4 >197209  gcgtcatgcttcggcgccacttccacagggccgggccacccgcggagggtggcagggccc 197268 
AC231618.3 <105956  ............................................................ 105897 

AC191546.4 >197269  gcgacgacgacaagaaggaagatcaccaagcaggagagttccccgaggtccgcgactgct 197328 
AC231618.3 <105896  ............................................................ 105837 

AC191546.4 >197329  tcatgatctacggtgggcaagcggcgaatgcctcggctcggcaccgcaagcaagagcgcc 197388 
AC231618.3 <105836  ............................................................ 105777 

AC191546.4 >197389  gggaggtctgcgcggtgaaggtggcggcgccagtctacctagactggtccgacaagccca 197448 
AC231618.3 <105776  ............................................................ 105717 

AC191546.4 >197449  tcaccttcgaccaagccgaccaccccgaccatgtgccgagctcggggaaatacccgctcg 197508 
AC231618.3 <105716  ............................................................ 105657 

AC191546.4 >197509  tcgtcgaccccgtcatcggcgacgtcaggctcaccaaggtcctcatggatggcggcagca 197568 
AC231618.3 <105656  ............................................................ 105597 

AC191546.4 >197569  gcctcaacatcatctacgccgagaccctcgggctcctgcgtgtcgatctgtcctccgtcc 197628 
AC231618.3 <105596  ............................................................ 105537 

AC191546.4 >197629  aagcaggcgctgtgcccttccatgggatcattccttggaagcgcgtccagcccctcggac 197688 
AC231618.3 <105536  ............................................................ 105477 

AC191546.4 >197689  aactcaacctccccgtctgcttcggaacgccctccaacttccgaagggaaaccctgatgt 197748 
AC231618.3 <105476  ............................................................ 105417 

AC191546.4 >197749  tcgaggtggtcgggttccgaggaacctaccacgcggtactgggaaggccatgctacgcga 197808 
AC231618.3 <105416  ............................................................ 105357 

AC191546.4 >197809  agttcatggccgtccccaactacacctacctgaagctcaagatgccgggccccaacgggg 197868 
AC231618.3 <105356  ............................................................ 105297 

AC191546.4 >197869  tcatcaccgtcggccccacgtacaagcacgcgttcgaatgcgacgtggagtgcgtggagt 197928 
AC231618.3 <105296  ............................................................ 105237 

AC191546.4 >197929  acgtcgaggcccttgccgagtccgaggccctcatcgctgacctggaaagcctctccaagg 197988 
AC231618.3 <105236  ............................................................ 105177 

AC191546.4 >197989  aggtgccagacgtgaaacgtcatgccggcaacttcgagccagtggagacggttaaggccg 198048 
AC231618.3 <105176  ............................................................ 105117 

AC191546.4 >198049  tccccctcgaccccagcggcgacgcctccaagcagatccggatcggctccgggctcaatc 198108 
AC231618.3 <105116  ............................................................ 105057 

AC191546.4 >198109  ccaaataggaagcagtgctcgtcgacttcctccgtgcaaacaccgacgtcttcgcgtgga 198168 
AC231618.3 <105056  ............................................................ 104997 

AC191546.4 >198169  gtccctcggacatgcccggcataccgagggatgtcgccgagcactcgctggatattcggg 198228 
AC231618.3 <104996  ............................................................ 104937 

AC191546.4 >198229  ccagagccc-gacccgtcaagcagcctctgcgccgattcgacgaggagaagcgcagagcg 198287 
AC231618.3 <104936  .........c.................................................. 104877 

AC191546.4 >198288  ataggcgagg 198297 
AC231618.3 <104876  .......... 104867

Events

Type

Date

Whodid

Comment

295661

InitHasAlign

01/15/2014 17:27:11

cgi_chen

find_overlapId: find_overlap_app.cpp 404199 2013-06-20 22:08:27Z rafanovi $ built Aug  1 2013. Toolkit wrapper  using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib
Info: Blast Including ID: 545482346
Info: Running Blast Filter: 0
Info: Determined ID: gi|545482346 needs Merging.
Info: Blast Including ID: 545482346
Info: Running Blast Filter: 0
Info: Determined ID: gi|545482346 needs Merging.
Info: Blast Including ID: 545482346
Info: Running Blast Filter: 0
Info: Determined ID: gi|545482346 needs Merging.
Info: Best Rank: 13 in  for 545482346 of 1
Info:  NG returned 1 alignments

tpf_solo for TPF_updated_1_v2

BAC Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
CH201-108O6				AC231618.3	100%	pos 140679 (F-)
				AC191546.4	100%	pos 163732 (F+)
				AC231618.3	100%	pos 140414 (F-)
				AC191546.4	100%	pos 163590 (F+)
CH201-110D16	AC191546.4	99.7%	pos 146921 (R+)
CH201-111C17	AC231618.3	100%	pos 120061 (R+)
	AC231618.3	100%	pos 120191 (R+)
	AC191546.4	100%	pos 146690 (R-)
	AC191546.4	100%	pos 146732 (R-)
CH201-111P20				AC191546.4	100%	pos 160822 (F+)
				AC231618.3	100%	pos 143499 (F-)
				AC231618.3	100%	pos 143544 (F-)
				AC191546.4	100%	pos 160387 (F+)
CH201-143A7				AC191546.4	100%	pos 81648 (F-)
CH201-144O13	AC191546.4	100%	pos 63848 (R-)
CH201-144O13	AC191546.4	99.7%	pos 64105 (R-)
CH201-146F14				AC191546.4	100%	pos 190679 (F+)
CH201-146F14				AC231618.3	100%	pos 112415 (F-)
CH201-155K9	AC191546.4	100%	pos 32325 (R-)
CH201-158F13				AC231618.3	100%	pos 114779 (F+)
CH201-158F13				AC191546.4	100%	pos 188258 (F-)
CH201-18N18	AC191546.4	100%	pos 32433 (R-)
CH201-198O8				AC191546.4	100%	pos 182298 (F+)
CH201-210B13	AC191546.4	100%	pos 38646 (R+)	AC191546.4	100%	pos 181808 (F-)
CH201-210B13	AC191546.4	100%	pos 38698 (R+)	AC191546.4	100%	pos 181769 (F-)
CH201-216D12				AC191546.4	99.2%	pos 149726 (F-)
CH201-216D12				AC191546.4	100%	pos 150150 (F-)
CH201-238G5	AC191546.4	99.86%	pos 187031 (R-)
	AC231618.3	99.86%	pos 115433 (R+)
	AC191546.4	99.57%	pos 187441 (R-)
	AC231618.3	99.57%	pos 115503 (R+)
CH201-239K13				AC191546.4	100%	pos 142770 (F+)
CH201-239K13				AC231618.3	100%	pos 123882 (F-)
CH201-244F11	AC231618.3	99.75%	pos 143803 (R-)
CH201-244F11	AC191546.4	99.75%	pos 160351 (R+)
CH201-244H11	AC231618.3	99.19%	pos 143956 (R-)
CH201-244H11	AC191546.4	99.19%	pos 160347 (R+)
CH201-264M8				AC231618.3	100%	pos 140823 (F-)
CH201-264M8				AC191546.4	100%	pos 163661 (F+)
CH201-26I9				AC191546.4	99.86%	pos 61774 (F-)
CH201-322D19				AC231618.3	100%	pos 141188 (F-)
CH201-322D19				AC191546.4	100%	pos 163076 (F+)
CH201-340A5				AC231618.3	99.64%	pos 19933 (F+)
CH201-340A5				AC231618.3	100%	pos 19929 (F+)
CH201-400D1				AC231618.3	97.92%	pos 125342 (F-)
				AC191546.4	99.38%	pos 178876 (F+)
				AC231618.3	99.38%	pos 125349 (F-)
				AC191546.4	97.92%	pos 179059 (F+)
CH201-417A10	AC191546.4	99.27%	pos 82 (R+)
CH201-417A10	AC191546.4	100%	pos 5 (R+)
CH201-41L22				AC231618.3	100%	pos 4556 (F-)
CH201-451C9	AC191546.4	100%	pos 81317 (R-)
CH201-494E6	AC231618.3	100%	pos 19467 (R-)
CH201-49M10				AC231618.3	100%	pos 115131 (F-)
CH201-49M10				AC191546.4	100%	pos 187985 (F+)
CH201-528P24				AC191546.4	98.87%	pos 180896 (F-)
CH201-573A4				AC191546.4	99.26%	pos 78603 (F+)
CH201-68O20				AC231618.3	100%	pos 7850 (F-)
CH201-68O20				AC191546.4	100%	pos 131141 (F+)
CH201-72N5	AC191546.4	99.83%	pos 63916 (R-)
CH201-72N5	AC191546.4	100%	pos 64163 (R-)
CH201-95I9				AC191546.4	99.67%	pos 38697 (F+)
ZMMBBb-140B12				AC191546.4	99.24%	pos 140034 (F-)
ZMMBBb-196J8				AC191546.4	97.83%	pos 149695 (F+)
ZMMBBb-312B24	AC191546.4	99.51%	pos 13115 (R-)
ZMMBBb-314N12				AC191546.4	99.54%	pos 73873 (F-)
ZMMBBb-342N16				AC191546.4	98.88%	pos 62597 (F+)
ZMMBBb-385P21				AC231618.3	99.55%	pos 4325 (F+)
ZMMBBb-390O9	AC191546.4	100%	pos 13542 (R+)
ZMMBBb-419L10				AC191546.4	98.44%	pos 13041 (F-)
ZMMBBb-497J10				AC191546.4	97.16%	pos 82051 (F-)
ZMMBBb-540G8				AC191546.4	98.17%	pos 113120 (F+)
ZMMBBb-543L5	AC191546.4	98.85%	pos 31004 (R+)	AC191546.4	98.7%	pos 161016 (F-)
ZMMBBb-543L5				AC231618.3	98.7%	pos 142609 (F+)
ZMMBBb-573L14				AC191546.4	99.22%	pos 135696 (F+)
ZMMBBb-598D7	AC191546.4	97.84%	pos 147926 (R-)	AC191546.4	98.79%	pos 30911 (F+)
ZMMBBb-604I16	AC191546.4	98.04%	pos 152785 (R+)
ZMMBBb-617D14	AC231618.3	97.29%	pos 142640 (R+)
ZMMBBb-617D14	AC191546.4	97.29%	pos 161536 (R-)
ZMMBBb-621E9				AC231618.3	98.88%	pos 72375 (F-)
ZMMBBb-96E11				AC191546.4	99.13%	pos 30911 (F+)

Fosmid Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
Z_AI-1284M7				AC231618.3	100%	pos 118815 (F-)
Z_AI-1284M7				AC191546.4	100%	pos 184116 (F+)
Z_AI-1325M2				AC191546.4	98.28%	pos 32158 (F+)
Z_AI-1382B18				AC191546.4	100%	pos 55339 (F+)
Z_AI-1430O11				AC191546.4	98.34%	pos 60826 (F-)
Z_AI-1489K2				AC191546.4	99.34%	pos 14670 (F+)
Z_AI-1492N14				AC231618.3	100%	pos 37303 (F-)
Z_AI-16N12	AC191546.4	100%	pos 30379 (R+)	AC191546.4	100%	pos 59939 (F-)
Z_AI-261N11	AC191546.4	100%	pos 82795 (R-)
Z_AI-309E19	AC191546.4	99.63%	pos 76650 (R+)	AC191546.4	99.59%	pos 76702 (F+)
Z_AI-329I19				AC191546.4	100%	pos 2337 (F-)
Z_AI-438C15				AC191546.4	100%	pos 140890 (F-)
Z_AI-442P8				AC231618.3	100%	pos 119907 (F-)
Z_AI-442P8				AC191546.4	100%	pos 146337 (F+)
Z_AI-591P9				AC191546.4	100%	pos 136876 (F-)
Z_AI-628P1				AC191546.4	98.29%	pos 56026 (F-)
Z_AI-634N6	AC191546.4	100%	pos 189460 (R-)
Z_AI-658L21	AC191546.4	99.77%	pos 39899 (R+)
Z_AI-731E22				AC231618.3	100%	pos 13197 (F+)
Z_AI-794L6	AC231618.3	100%	pos 115263 (R-)	AC231618.3	100%	pos 37116 (F+)
Z_AI-794L6	AC191546.4	100%	pos 187495 (R+)
Z_AI-804K11				AC231618.3	100%	pos 125537 (F-)
Z_AI-804K11				AC191546.4	100%	pos 178397 (F+)
Z_AI-840J21				AC231618.3	100%	pos 12987 (F+)

Repeats

acc	start	stop	repeat id	strand	name	family	class

Join Legend

Curator Links

Alignment for AC191546.4 and AC231618.3

Alignment Summary

Alignment 1 of 1