Alignment last updated: 12/19/2014 15:59:42

Join Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

Alignment for AC190934.4 and AC197594.4

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AC190934.4 Zea mays chromosome 1 clone CH201-39N2, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces [htgs_limited_order]

Length: 178,748 bp

AC197594.4 Zea mays chromosome 1 clone ZMMBBb-596A11, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces [htgs_limited_order]

Length: 155,802 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

Alignment 1
Align ID: 116836
Total Length: 20633
Aligned Length: 20617
Percent Identity: 99.9272
Number of Gaps: 16
Number of Mismatches: 15
Source: CtgOverlap Seq-Align
Valid Switchpoint: true (A)

Switch Points

Type	Point1	Point2	Orient1	Orient2	Curator	Comment	Time	Id	Alignment	Releases
A	178748	20620	+	+	chenhc	Taxid 4577 chrom 1 Primary assembly	2014-12-19 15:59:42.170	120755	116836

Alignment 1 of 1

 AC190934.4 : + : 158118..178748
 AC197594.4 : + : 1..20619
 Mismatches = 15, Gaps = 16, Length = 20633
 Percent identity = 99.93%
 Score = 3.792e+04 bits (20532), Expect = 0
  1 BAC and 0 Fosmid bridging clones.
  1 BAC and 0 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AC190934.4 >158118  ggagcaaccccctggcttcgaggatgaacggtaccccgaccatgtgtgtaagctctctaa 158177 
AC197594.4 >1       ............................................................ 60     

AC190934.4 >158178  ggcgctctatggacttaagcaagccccaagagcatggtatgaatgccttagagacttttt 158237 
AC197594.4 >61      ......................................................t..c.. 120    

AC190934.4 >158238  aattgctaatgctttcaaggttgggaaagccgatccaactctttttacaaagacatgtga 158297 
AC197594.4 >121     ................................................t.....t...a. 180    

AC190934.4 >158298  tggtgatttgtttgtgtgccaaatttatgtcgatgacataatatttggttctactaacca 158357 
AC197594.4 >181     ............................................................ 240    

AC190934.4 >158358  aaagtcttgtgaagagtttagcagggtgatgacgcagaaattcgagatgtcgatgatggg 158417 
AC197594.4 >241     ............................................................ 300    

AC190934.4 >158418  cgagttgaactacttccttgggttccaagtgaagcaactcaaggatggcaccttcatctc 158477 
AC197594.4 >301     .............................................c.............. 360    

AC190934.4 >158478  ccaaacgaagtacacgcaagatataaaaaagcggtttgggatgaaggacgccaagcccgc 158537 
AC197594.4 >361     ......................c.gct................................. 420    

AC190934.4 >158538  aaagactccgatggggaccgacggacacaccgacctcaacaaaggaggtaagtccgttga 158597 
AC197594.4 >421     ............................................................ 480    

AC190934.4 >158598  tcaaaaagcataccggtcaatgataggttctttgctttacttatgtgctagtagaccgga 158657 
AC197594.4 >481     ............................................................ 540    

AC190934.4 >158658  tattatgcttagcgtatgcatgtgtgctagatttcaatccgatcctaaggagtgtcactt 158717 
AC197594.4 >541     ............................................................ 600    

AC190934.4 >158718  agtggcggtgaagcgaattcttagatatttggttgctacgccttgcttcgggctctggta 158777 
AC197594.4 >601     ............................................................ 660    

AC190934.4 >158778  tccaaaggggtctacctttgacttagttggatactcagactccgactatgctggatgtaa 158837 
AC197594.4 >661     ............................................................ 720    

AC190934.4 >158838  ggtcgataggaagagtacatcggggacgtgccaattcttaggaaggtccctggtgtcatg 158897 
AC197594.4 >721     ............................................................ 780    

AC190934.4 >158898  gaactctaagaaacaaacctccgttgccctatccaccgctgaggccgagtacgttgccgc 158957 
AC197594.4 >781     ............................................................ 840    

AC190934.4 >158958  gggtcagtgttgcgcgcaactgctttggatgaggcaaaccctccgggactttggctacaa 159017 
AC197594.4 >841     ............................................................ 900    

AC190934.4 >159018  tctgagcaaagtcccactcctatgtgacaatgagagtgctatccgcatggcggagaatcc 159077 
AC197594.4 >901     ............................................................ 960    

AC190934.4 >159078  tgttgagcacagccgcacaaagcacatagacatccggcatcactttttgagagaccacca 159137 
AC197594.4 >961     ............................................................ 1020   

AC190934.4 >159138  gcaaaagggagatatcgaagtgtttcatgttagcaccgaaaaccagctagccgatatctt 159197 
AC197594.4 >1021    ............................................................ 1080   

AC190934.4 >159198  cactaagcctctagatgagaagaccttttgcaggttgcgtagtgagctaaatgtcataga 159257 
AC197594.4 >1081    ............................................................ 1140   

AC190934.4 >159258  ttcgcggaacctggattgaattgtagcatacatgtacttatgcttttgatcatgttcctg 159317 
AC197594.4 >1141    ............................................................ 1200   

AC190934.4 >159318  tttgcattttgttgctttattatggtgctcaagttgtaaaaacactccctggacctcaca 159377 
AC197594.4 >1201    ............................................................ 1260   

AC190934.4 >159378  agtccgttgcaaagtgatgcacatgtttagggggagatgtgttacaacttgaccctttga 159437 
AC197594.4 >1261    ............................................................ 1320   

AC190934.4 >159438  gactaaccatgtgcttgagtttgatgttttagtctcgaaggaggattgaaagggaaaagg 159497 
AC197594.4 >1321    ............................................................ 1380   

AC190934.4 >159498  tggacttggaccatgaaagacttccactgcactccgatgagagggtaacgtattccaagt 159557 
AC197594.4 >1381    ............................................................ 1440   

AC190934.4 >159558  tcatctcatgcaatcttattgcctgtgtattcttattgaagatcttggtaaggcaatggg 159617 
AC197594.4 >1441    ...........-................................................ 1499   

AC190934.4 >159618  gttagaaggccaagattgatcctgttttggtgcttgatgctaaagggggagaaaatagag 159677 
AC197594.4 >1500    ............................................................ 1559   

AC190934.4 >159678  gccaaagtgataaatggatcaactaccacttgagagattttg-aaaatagtagaatagag 159736 
AC197594.4 >1560    ..........................................a................. 1619   

AC190934.4 >159737  tttttgttgtgtcaaaagcttttattgtctcta-ttgtcttgtctctattgtcaaaaatt 159795 
AC197594.4 >1620    .................................t.......................... 1679   

AC190934.4 >159796  ggcttcttgtggggagaagtgttgattatgggaaatagggggagtttttgaaatctttga 159855 
AC197594.4 >1680    ............................................................ 1739   

AC190934.4 >159856  tcaatctcttttggaatgactctctttatgcctcaacatgtgtgttttacatagaaatag 159915 
AC197594.4 >1740    ............................................................ 1799   

AC190934.4 >159916  agatttgagtttgatttgcaaaaacaaaccaagtggtggcaaaggatgatccatatatgc 159975 
AC197594.4 >1800    ............................................................ 1859   

AC190934.4 >159976  caaaattgaatcaaaaccaatttgagtttttatttgaagtgattttgcacttgttctatc 160035 
AC197594.4 >1860    ............................................................ 1919   

AC190934.4 >160036  tactttatgttgtgttggcataaatcaccaaaaagggggagattgaaagggaaatgtgcc 160095 
AC197594.4 >1920    ............................................................ 1979   

AC190934.4 >160096  tttgggccatttctaagtattttggtgattgagtgtcaacacaactgcttaaatgtaaat 160155 
AC197594.4 >1980    ............................................................ 2039   

AC190934.4 >160156  caatgcccatggttgaacaaagtgcaaatctagagcaaaggtatgtttctaagtcttagt 160215 
AC197594.4 >2040    ............................................................ 2099   

AC190934.4 >160216  acattggttttgtgtactaatatatttgtctaagtgttagaaacagatagaagaagagaa 160275 
AC197594.4 >2100    ............................................................ 2159   

AC190934.4 >160276  gagaagacttggctgtgtacagccaaggggctgtttcggtctggggcaccggactgtccg 160335 
AC197594.4 >2160    ............................................................ 2219   

AC190934.4 >160336  gtggtgcaccggacagtgtccggtggtgcaccggacagtgtccggtgcgccaggctcccc 160395 
AC197594.4 >2220    ........................................................-... 2278   

AC190934.4 >160396  tcggccgaagagcccgctctcgggaattttgctgacggcgtacggctaaaattcaccgga 160455 
AC197594.4 >2279    ..........................-................................. 2337   

AC190934.4 >160456  cctgtcccggtgtgcaccggactgtccggggagcaaacggtcggccagggccaacggtcg 160515 
AC197594.4 >2338    .-...-.......................t....c......................... 2395   

AC190934.4 >160516  gccgcgcgatcatcgcaggacacgtggccgagccaacggtcggaagggggcaccagactg 160575 
AC197594.4 >2396    ............g............................................... 2455   

AC190934.4 >160576  tccggtgtgcaccggacatgtccggtgcgccaacggctcccgcatctgcaacggtcggct 160635 
AC197594.4 >2456    ............................................................ 2515   

AC190934.4 >160636  tcgccatttaaggaaaggaatcaggcaccggacactgttcggtgtgcaccggactgtccg 160695 
AC197594.4 >2516    ............................................................ 2575   

AC190934.4 >160696  gtgcgcccgacgacagaaggcaaagatggccttccagatttgttttcaacggctcctagc 160755 
AC197594.4 >2576    ............................................................ 2635   

AC190934.4 >160756  tgccttggggctataaaagggacccctaggcgcatggaggagtacaccaagcaactcttg 160815 
AC197594.4 >2636    ............................................................ 2695   

AC190934.4 >160816  agcattcttgatcatccacacccagtctttgcgcatccgtttgtgattctaagtgattcg 160875 
AC197594.4 >2696    ............................................................ 2755   

AC190934.4 >160876  agctctgttcttgtgagaaactgtgagatagtctttgagctcgaatcttggccgtgtgtg 160935 
AC197594.4 >2756    ............................................................ 2815   

AC190934.4 >160936  tgcacgtttcgctgtggatttgtgtgtgttgcttccctcccttactccgtgcttctttgt 160995 
AC197594.4 >2816    ............................................................ 2875   

AC190934.4 >160996  gaatcttaattgtaagggcgagagactccaatctgtggagattcctcgcgagtgggataa 161055 
AC197594.4 >2876    ............................................................ 2935   

AC190934.4 >161056  agataagcaaggcaaaaacaccgtggtattcaagtgggtctttggaccgcttgagagggg 161115 
AC197594.4 >2936    ............................................................ 2995   

AC190934.4 >161116  ttgattgcaaccctcgtccgttgggacgccacaacgtggaagtaggcaagttttgtactt 161175 
AC197594.4 >2996    ............................................................ 3055   

AC190934.4 >161176  ggccgaaccacgggataaatctctgtgtcttctctgtgattgtcatattgtgcaagatct 161235 
AC197594.4 >3056    ............................................................ 3115   

AC190934.4 >161236  cctccttagccacttggcaattattatgctaacccctaacaagtttttgtggctataagt 161295 
AC197594.4 >3116    ............................................................ 3175   

AC190934.4 >161296  taagtttttacaggatcacctattcaccccccctctaggtgctctcacttcttagcgaag 161355 
AC197594.4 >3176    ............................................................ 3235   

AC190934.4 >161356  gcaaggccttgggcgagccggagatgtgtctgccgttaaaaggggggcctcgggcgagac 161415 
AC197594.4 >3236    ............................................................ 3295   

AC190934.4 >161416  ggaaacccctcggggtcggctgcccttgcccgaggctaggctcgggcgaggcgtgatcga 161475 
AC197594.4 >3296    ............................................................ 3355   

AC190934.4 >161476  gtcgctcgtatggactgatccctgacttaatcgcacccatcaggcctctgcagctttatg 161535 
AC197594.4 >3356    ............................................................ 3415   

AC190934.4 >161536  ctgatgggggttaccagctgagaattaggcgtcttgagggtacccctaattatggtcccc 161595 
AC197594.4 >3416    ............................................................ 3475   

AC190934.4 >161596  gacagtagcccccgagcctcgaagggagtgttagcactcgcttggaggctttcgtcgcac 161655 
AC197594.4 >3476    ............................................................ 3535   

AC190934.4 >161656  ttttttgcaaggggaccatcctttctcggttgcattttgttccggtgggtgcgcgcgagc 161715 
AC197594.4 >3536    ............................................................ 3595   

AC190934.4 >161716  gcacccgccgggtgtagcccccgaggcctcggaggagtggtttcactccttcgaggtctt 161775 
AC197594.4 >3596    ............................................................ 3655   

AC190934.4 >161776  aatgccttgcgtaatgcttcggctggtctggttgttccctcatgcgagcaggccgtagcc 161835 
AC197594.4 >3656    ............................................................ 3715   

AC190934.4 >161836  cgggtgcacggtcggggcccaagttctcgggctggtatgttgacgctgtcaacggtttgg 161895 
AC197594.4 >3716    ............................................................ 3775   

AC190934.4 >161896  ccggagccaggtttgcgagagcagcccccgagcctctgcacagagcgagagggcgatcag 161955 
AC197594.4 >3776    ............................................................ 3835   

AC190934.4 >161956  ggacagactcggcttttttacatacgcccctatgtcgcctttccgcaaggaggagggggg 162015 
AC197594.4 >3836    ............................................................ 3895   

AC190934.4 >162016  agagcgccatgttaccctcgatgggcaccgaacatggtgtctccggtgagctgcaagcgg 162075 
AC197594.4 >3896    ............................................................ 3955   

AC190934.4 >162076  gtaatccgagtggacgtccgtgccccgttcgttgggggtcggctaggggcccagaggcac 162135 
AC197594.4 >3956    ............................................................ 4015   

AC190934.4 >162136  gcccaaaagtacctgcgggtgatctgccggacccggtcccctggcgacggggtccgaggg 162195 
AC197594.4 >4016    ............................................................ 4075   

AC190934.4 >162196  ctcgatgcctccctccgatgggattccgttacaagatcgttcccgctggtctcggaaatg 162255 
AC197594.4 >4076    ............................................................ 4135   

AC190934.4 >162256  tcctagggtacctcgggagcacagcccgagccttggttatgtatcgaacgtacccctggt 162315 
AC197594.4 >4136    ............................................................ 4195   

AC190934.4 >162316  catccctcgctcggcgtctgaggctactgtgaacccttcgggggccagccttcgaacccc 162375 
AC197594.4 >4196    ............................................................ 4255   

AC190934.4 >162376  tgatcagtaatgggcgtggagcccgagtagcctgaggcggccgtggaacccttcgggggg 162435 
AC197594.4 >4256    ............................................................ 4315   

AC190934.4 >162436  ccggccttcgaacctctgaccagtagtgggtgtcgggcccacgcgatctgaggcagctgt 162495 
AC197594.4 >4316    ............................................................ 4375   

AC190934.4 >162496  tgaacccttcgggggggccagccttcgaacctctgatcagtaaggaggctcggagccttg 162555 
AC197594.4 >4376    ............................................................ 4435   

AC190934.4 >162556  ttccttcacggggaaggatccctttcggggtatccccctttcccggtccctgtcgcaaga 162615 
AC197594.4 >4436    ............................................................ 4495   

AC190934.4 >162616  gatagagaaaagaggaaaaagggaaaaggatacgaaaccgaacgacgcggcgtacctttt 162675 
AC197594.4 >4496    ............................................................ 4555   

AC190934.4 >162676  ttggcgcggttgttacggcgaaggcgaagcgtcgcccgctactcctgccagaaacgccgc 162735 
AC197594.4 >4556    ............................................................ 4615   

AC190934.4 >162736  ctgtccagccgcggagttagtgcgacggggcgagtagttggcggggcagccgttgcgcgt 162795 
AC197594.4 >4616    ............................................................ 4675   

AC190934.4 >162796  gcgcgagccattcgaggaacggatcacaggcgcgttgtcttcacgccgtgagagggggtt 162855 
AC197594.4 >4676    ............................................................ 4735   

AC190934.4 >162856  ctcttgctgcccccggatgggacgtgagcttggctgacgacgtgaccgctgctcccgcgc 162915 
AC197594.4 >4736    ............................................................ 4795   

AC190934.4 >162916  gcctgccaccgtcattactaccggcccgcttttggccgcgttggccgccgcgtgaggctg 162975 
AC197594.4 >4796    ............................................................ 4855   

AC190934.4 >162976  gtgctgccgggtcgcgcgctgggtcgcctcgagtcgcggtattggttctgcaatcgagga 163035 
AC197594.4 >4856    ............................................................ 4915   

AC190934.4 >163036  ggcgcggtggtggtgcaggcggtgcggttgtttcatgcagcatctggcgcgccggttgcg 163095 
AC197594.4 >4916    ............................................................ 4975   

AC190934.4 >163096  cgacgcgtgggcctgggcctccatgctggtgtgtcgggagttggagaagtgcgtccattt 163155 
AC197594.4 >4976    ............................................................ 5035   

AC190934.4 >163156  ggcgcggttgcatgccgcctgcatggctgcccgcccctttcgcccgttggtctgggcaaa 163215 
AC197594.4 >5036    ............................................................ 5095   

AC190934.4 >163216  agtggagggtcacttgtaaccgctgggcggttgcatgcaccacgcgcggcggtttggctt 163275 
AC197594.4 >5096    ............................................................ 5155   

AC190934.4 >163276  cttctgctcggagccggtctgcatgacatgcgggatccagcccccgcgccgcaggggagg 163335 
AC197594.4 >5156    ............................................................ 5215   

AC190934.4 >163336  gctttggagcgtgttggaggagactccgcccgtgacgattgggggcgcgcgtagggagag 163395 
AC197594.4 >5216    ............................................................ 5275   

AC190934.4 >163396  ttgcctttaaaaggagggcgacccctttcgtaaggcgaccatgtctcctcgctcccttat 163455 
AC197594.4 >5276    ............................................................ 5335   

AC190934.4 >163456  gcgccgcgcctttccaccttccaagcccccggatggggggaacccgccgtcttttcgcct 163515 
AC197594.4 >5336    ............................................................ 5395   

AC190934.4 >163516  tcatcgttgggaggaaacgcaactccgtgggagttggtacctttcagccatcgttcggct 163575 
AC197594.4 >5396    -.......-.....-............................................. 5452   

AC190934.4 >163576  tcaaggattttcatcatgcagcccggccgcacccctccaccggcggtcacccaaggtggt 163635 
AC197594.4 >5453    ............................................................ 5512   

AC190934.4 >163636  gacctccagcttgatggtgggggaaagcgagccgggctgcggcctctgcccctccctcag 163695 
AC197594.4 >5513    ............................................................ 5572   

AC190934.4 >163696  cctcaaggattttcatcaccagggctggggaggggagtgtgccgagttgaggtcggcccc 163755 
AC197594.4 >5573    ............................................................ 5632   

AC190934.4 >163756  gcgtgggcggcggcccgctccttcactcagtgatcggagggaggagcggttgtcgtccat 163815 
AC197594.4 >5633    ............................................................ 5692   

AC190934.4 >163816  ggcgctggcatctgcagcgtgcctggctttcggacgcgagtggcttcggggccgctcgcg 163875 
AC197594.4 >5693    ............................................................ 5752   

AC190934.4 >163876  gcgccggcgtctgccacggcagccggaagaggttcttccgccggcgtgatagccaaggct 163935 
AC197594.4 >5753    ............................................................ 5812   

AC190934.4 >163936  ggccacggaccgccctccaactctacggccttctgcccgtccttgccttacgagttttgg 163995 
AC197594.4 >5813    ............................................................ 5872   

AC190934.4 >163996  catgggcgggggactcctggcagcaacatccgccctgaggtcagtgccgccgctgttcgg 164055 
AC197594.4 >5873    ............................................................ 5932   

AC190934.4 >164056  ccccccggagcagaagtcgtcgtcgtcgccgctgctggagcaggtgacggcgcgccgttc 164115 
AC197594.4 >5933    ............................................................ 5992   

AC190934.4 >164116  gtcggtcttccgttgctccgcaggccttcccccatggagtggggttgttcgtacccgcgg 164175 
AC197594.4 >5993    ............................................................ 6052   

AC190934.4 >164176  aggggggaaccggagttccgtttgtaatggcacttcgaatgccagtgtttttgttcatta 164235 
AC197594.4 >6053    ............................................................ 6112   

AC190934.4 >164236  cggctttcggggcctgaacatgtatgtaacgtcggcacggagccgtgttttttcctcatt 164295 
AC197594.4 >6113    ............................................................ 6172   

AC190934.4 >164296  tttgagcgctaagactcgtctgttgattatctgaatcgcttcaccaagcatgagtcgccc 164355 
AC197594.4 >6173    ............................................................ 6232   

AC190934.4 >164356  cgtgtcaaggtgacgagtgaggtatccgtatcccggaggcgtaggagtccctcggctcgg 164415 
AC197594.4 >6233    ............................................................ 6292   

AC190934.4 >164416  tcggccttgctgtccgaggctcctctagcttagttaaagagacccctcggccgctcttcg 164475 
AC197594.4 >6293    ............................................................ 6352   

AC190934.4 >164476  acgagccgaggccaggggtagcgatatcagtatgaacagaggcggagtcggctcgaaaat 164535 
AC197594.4 >6353    ............................................................ 6412   

AC190934.4 >164536  gaaacctggttggccggagcctagccgggttgtccgttggcgggaccgacgtcggagttg 164595 
AC197594.4 >6413    ............................................................ 6472   

AC190934.4 >164596  atcagccgaggcctcggactgggctggcgcccttggaagacggttggccgaggccccagg 164655 
AC197594.4 >6473    ............................................................ 6532   

AC190934.4 >164656  ggtaaccggccgagccgcctgctcgggctggattcccggagaagtccctggcagcgattg 164715 
AC197594.4 >6533    ............................................................ 6592   

AC190934.4 >164716  cccgggcgtggtgatgacgtcgtccttagagatggccaaacgggccgcccggcccggccc 164775 
AC197594.4 >6593    ............................................................ 6652   

AC190934.4 >164776  ggcccgggcccggtgaagcccggccaaaaaccgggccgggcctgctgtgccagcgtgccc 164835 
AC197594.4 >6653    ............................................................ 6712   

AC190934.4 >164836  aagtttctgtccaagcccggcccgcagcgggcctaaacgggccgggccggcccgtttagc 164895 
AC197594.4 >6713    ............................................................ 6772   

AC190934.4 >164896  acgaaaaaacgggccgaaaagcgggctaaacgggccggtaagcacgttttagtgtaaaaa 164955 
AC197594.4 >6773    ............................................................ 6832   

AC190934.4 >164956  aaccgggcttaacgggcttagaggtaaacgggccgtgccgggctagcccgccgtgcctag 165015 
AC197594.4 >6833    ............................................................ 6892   

AC190934.4 >165016  tttcatgtccaagcccgcccgcttattctaccgtgccgggttcggaccgggcccaaaaag 165075 
AC197594.4 >6893    ............................................................ 6952   

AC190934.4 >165076  cgggcttcgtgccgggctcacgggcctcgtgctttttggccatctatagtcgtccttcgg 165135 
AC197594.4 >6953    ............................................................ 7012   

AC190934.4 >165136  agcggagatcctcggaccgcgtcgccgtccgaggctaggtcgggcctcgtcgaaggtgtc 165195 
AC197594.4 >7013    ............................................................ 7072   

AC190934.4 >165196  gtcgatgccgagggtgttgctgcccccttccagcgtcaagacccgagcctgcaggatcag 165255 
AC197594.4 >7073    ............................................................ 7132   

AC190934.4 >165256  attgtcttgtagcgcgtgccttgtgcggccgccgaggccagaacacacaccctcgctgcg 165315 
AC197594.4 >7133    ............................................................ 7192   

AC190934.4 >165316  ttgtaaagctgcgtctcttttcctcttgtttcgagtatctggactttttgtcggtaacag 165375 
AC197594.4 >7193    ............................................................ 7252   

AC190934.4 >165376  ggatgtttgtgcgagcgagagttgcttctcgcggaaggtgatgagtgaggtatctgtatc 165435 
AC197594.4 >7253    ............................................................ 7312   

AC190934.4 >165436  ccggaggcgtgggagtccctcggctcggtcggccttgccgcttacgcgtactttcacccg 165495 
AC197594.4 >7313    ............................................................ 7372   

AC190934.4 >165496  tccatgaggccctgtcaccgactcggtcgagaaggctcgaaggatcgcttcggcagaagg 165555 
AC197594.4 >7373    ............................................................ 7432   

AC190934.4 >165556  gcttccgaacgtaaagacttgttcgatccgcggagccactttatccaaacgcgagttact 165615 
AC197594.4 >7433    ............................................................ 7492   

AC190934.4 >165616  tatcgcagaaggtgatgagtgaggtatccgtatcccggaggcgtaggagtccctcggctc 165675 
AC197594.4 >7493    ............................................................ 7552   

AC190934.4 >165676  ggtcagccttggctgcttacgtgtactccgtcgtttccaggacccacttttcgaagtagt 165735 
AC197594.4 >7553    ............................................................ 7612   

AC190934.4 >165736  caaaaagcacgaaagatattctggtaaaagagatcttttttcgaggaaaattttgacgca 165795 
AC197594.4 >7613    ............................................................ 7672   

AC190934.4 >165796  gagggggtttccccccttttagcccccgagggagggtcgggctttgccgaggcgaggccg 165855 
AC197594.4 >7673    ............................................................ 7732   

AC190934.4 >165856  accctaccttgttgactaaactttgcgtgggtgcgaggtatatgaacaacttggaaacat 165915 
AC197594.4 >7733    ............................................................ 7792   

AC190934.4 >165916  cttaagggtagaagcgacgtagctgttggatgttccaagcgttgccgtagacctcgcctt 165975 
AC197594.4 >7793    ............................................................ 7852   

AC190934.4 >165976  gactgttggccagcttgtatgtttcgggcttcagaactttggcgatgacgaatggcccct 166035 
AC197594.4 >7853    ............................................................ 7912   

AC190934.4 >166036  cccaggggggcgtgagcttgtgcctccctcgggtgtcttgtcgcagccgaagcaccaggt 166095 
AC197594.4 >7913    ............................................................ 7972   

AC190934.4 >166096  cgcccacctggaggtctcggggtcggacccctcgggcgtggtagcgtcgtagggattgct 166155 
AC197594.4 >7973    ............................................................ 8032   

AC190934.4 >166156  gataccgcgccgagtgtagtaaggccctgtcccgagcctcttccagctggtccagcgagt 166215 
AC197594.4 >8033    ............................................................ 8092   

AC190934.4 >166216  cttctcggctagcttgattgctttgatcgtcgtaggccctcgtcctcggggagccgtatt 166275 
AC197594.4 >8093    ..........................................................-. 8151   

AC190934.4 >166276  tccaggtcagtgggcaagacggcgtcggccccgtagaccaggaagaacggcgtgaaaccc 166335 
AC197594.4 >8152    ............................................................ 8211   

AC190934.4 >166336  gtggctcggctcggcgttgtttctcaggctccagaccaccgaggggagttccttcatcca 166395 
AC197594.4 >8212    ...................-........................................ 8270   

AC190934.4 >166396  tcgcttgccgaacttgttgaggtcgttgtaaatccgatgcctgagccgttgtagaatcat 166455 
AC197594.4 >8271    .....................................g...................... 8330   

AC190934.4 >166456  gccgttggcacgctctacttgcccattcgacatgggatgagccacggcggcccagtccac 166515 
AC197594.4 >8331    ............................................................ 8390   

AC190934.4 >166516  ccggatgtggtgatcctcgcaaaaatccaagaattttctgccggtgaactgggtgccgtt 166575 
AC197594.4 >8391    ............................................................ 8450   

AC190934.4 >166576  gtcggtgatgatggagttggggatcccgaagcgatggatgatgttggtgaagaacgccac 166635 
AC197594.4 >8451    ............................................................ 8510   

AC190934.4 >166636  cgcctgctcggacctgatgctgttcaggggtcggacctcgatccacttggagaacttgtc 166695 
AC197594.4 >8511    ............................................................ 8570   

AC190934.4 >166696  gatggcgaccagcaggtgcgtgtagcccccgggcgccttctgcaagggaccgacgaggtc 166755 
AC197594.4 >8571    ............................................................ 8630   

AC190934.4 >166756  cagaccccacacagcaaagggccaggtgatgggtatcgtctgcagggcctgagcgggcag 166815 
AC197594.4 >8631    ............................................................ 8690   

AC190934.4 >166816  gtgggtctgcttcgcatagaattgacacccttcgcaggtgcggacaattctagtagcgtc 166875 
AC197594.4 >8691    ............................................................ 8750   

AC190934.4 >166876  ggccaccgccgttggccagtagaagccttgccggaaagcattcccgacaagggctcgggg 166935 
AC197594.4 >8751    ............................................................ 8810   

AC190934.4 >166936  cgctgcgtgatggccgcaagcccccgagtgtatctcttgcaggagttcctgaccttcggc 166995 
AC197594.4 >8811    ............................................................ 8870   

AC190934.4 >166996  gatggagatgcatcgctggaggatgcccgagggactgcggtggtagagctccttcccatc 167055 
AC197594.4 >8871    ............................................................ 8930   

AC190934.4 >167056  gcccagcaggacgaacgacttggcgcgtcgcgctatccgccgagcctcggctcggtcgag 167115 
AC197594.4 >8931    ............................................................ 8990   

AC190934.4 >167116  gggcagctccccttggcggagatattgcaggtacggggtctgccaatctcgatcaggcgt 167175 
AC197594.4 >8991    ............................................................ 9050   

AC190934.4 >167176  ggccccgctccgctcctcctcgatgtgcagcgcctcgccctcgggggccgagggtacctc 167235 
AC197594.4 >9051    ............................................................ 9110   

AC190934.4 >167236  gggctgaaccgaggacacctcgggctggaccgaggatgcctcgggctggaccgagggtgc 167295 
AC197594.4 >9111    ............................................................ 9170   

AC190934.4 >167296  ctcgggctcgggcgtgtcgttgatcttgacggagggctgatgcagatcccgggagaagac 167355 
AC197594.4 >9171    ............................................................ 9230   

AC190934.4 >167356  gtccgggggaaccgttgttcgccccgaggctatttttgccagctcgtccgcagtctcgtt 167415 
AC197594.4 >9231    ............................................................ 9290   

AC190934.4 >167416  gtagcgccgagcgatgtggttaagctcgagcccgtagaaattgtcttccaggcgccgaac 167475 
AC197594.4 >9291    ............................................................ 9350   

AC190934.4 >167476  ctcatcgcagtaggcctccatcttcgggtcgcggcagtgggagttcttcatgacttggtc 167535 
AC197594.4 >9351    ............................................................ 9410   

AC190934.4 >167536  gatgacgagctgcgagtcgccgcgagcgtcgaggcgtcggacccctagctcgatggcgat 167595 
AC197594.4 >9411    ............................................................ 9470   

AC190934.4 >167596  tcgcaatccgttgatcagagcttcgtactcagccacattgttggacgccgggaaatggag 167655 
AC197594.4 >9471    ............................................................ 9530   

AC190934.4 >167656  gcgtagcacgtagcgtaggtgtttcccgaagggcgagatgaagagcaggcccgcgccgac 167715 
AC197594.4 >9531    ............................................................ 9590   

AC190934.4 >167716  tcccgtcttcatcagcgacccgtcgaaaaacatggtccagagctccggttggatcggagc 167775 
AC197594.4 >9591    ............................................................ 9650   

AC190934.4 >167776  cgtcggcagctgggtgtcgacccattcggctacgaagtccgccaatacctgggacttgat 167835 
AC197594.4 >9651    ............................................................ 9710   

AC190934.4 >167836  ggccttccggggcgcgaacgagatggtctcgcccatgatttccaccgcccactttgcgat 167895 
AC197594.4 >9711    ............................................................ 9770   

AC190934.4 >167896  cctgctcgaggcctctcggcactggatgatctcccccagggggaaggatgacaccacagt 167955 
AC197594.4 >9771    ............................................................ 9830   

AC190934.4 >167956  taccgggtgagactcaaagtagtgtcgcaacttccgcctcgtcaggatcactgcgtacag 168015 
AC197594.4 >9831    ............................................................ 9890   

AC190934.4 >168016  cagcttctgtacttgtgggtagcggatcttggtttcggacagtacctcgctgacgaagta 168075 
AC197594.4 >9891    ............................................................ 9950   

AC190934.4 >168076  aactggcctctgaacgggcaatgcatgcccctcttcttgcctctcgaccacaatcgcggc 168135 
AC197594.4 >9951    ............................................................ 10010  

AC190934.4 >168136  gctaaccacctgagtggtcgcggcgacatagaccaagagggcttctccatcagctggggg 168195 
AC197594.4 >10011   ............................................................ 10070  

AC190934.4 >168196  taccaagataggcgccttggtgaggagcgccttcaggtccccgagagcttcctcgacctc 168255 
AC197594.4 >10071   ............................................................ 10130  

AC190934.4 >168256  aggggtccaagtgaagcactcggccttccttaacaggcggtacagaggcagacctctttc 168315 
AC197594.4 >10131   ............................................................ 10190  

AC190934.4 >168316  gccgaggcgtgagatgaaccggctcagggccgcgagacatcccatgaccctctgtacacc 168375 
AC197594.4 >10191   ............................................................ 10250  

AC190934.4 >168376  ttttaagtccttgatgggccccatgttggtgatggctgcgatcttctccgggttggcttc 168435 
AC197594.4 >10251   ............................................................ 10310  

AC190934.4 >168436  gatgccccactcggagacgatgaaccccaagagcatgcctcggggcaccccgaagacaca 168495 
AC197594.4 >10311   ............................................................ 10370  

AC190934.4 >168496  cttctcgggattgagcttgacgcctttcgctttgagacaccggaatgtcacttcaaggtc 168555 
AC197594.4 >10371   ............................................................ 10430  

AC190934.4 >168556  ggagaggaggttggaagccttccttgtcttgactacgatgtcatcgacgtaggcctcgac 168615 
AC197594.4 >10431   ............................................................ 10490  

AC190934.4 >168616  tgtgcgaccgatgtgttcaccgaacacatggttcatgcaccgctggtacgtcgtgcccgc 168675 
AC197594.4 >10491   ............................................................ 10550  

AC190934.4 >168676  attcctcgaaccgaacggcatggtgacatagcagtacattccgaagggcgtgatgaaaga 168735 
AC197594.4 >10551   ............................................................ 10610  

AC190934.4 >168736  agtcgcgagctggtcggactctttcatccggatttggtgataccctgagtaggcatcgag 168795 
AC197594.4 >10611   ............................................................ 10670  

AC190934.4 >168796  gaaggacagggtttcgcacccagcagtggaatccacgatttgatcgatgcgaggtagagg 168855 
AC197594.4 >10671   ............................................................ 10730  

AC190934.4 >168856  gtagggaaccttcggacatgctttgttgagaccagtgtagtctacacacatccgccattt 168915 
AC197594.4 >10731   ............................................................ 10790  

AC190934.4 >168916  cccccctttctttctcacaagcacagggttggcaagccattcgggatggaatacctcttt 168975 
AC197594.4 >10791   ............................................................ 10850  

AC190934.4 >168976  gatgaaccctgctgccattagcttgtggatctcctcgcctatcactctgcgcttctcctc 169035 
AC197594.4 >10851   ............................................................ 10910  

AC190934.4 >169036  gtcgaatcggcgcagaggctgcctgacgggtcgggctccggcccgaatatccagcgagtg 169095 
AC197594.4 >10911   ............................................................ 10970  

AC190934.4 >169096  ctcggcgacatccctcggtatgtcgggcatgtccgagggactccacgcaaagacgtcggc 169155 
AC197594.4 >10971   ............................................................ 11030  

AC190934.4 >169156  gtttgcgcggagaaagtcgacgagcactgcttcctatttggggtcgagcccggaaccgat 169215 
AC197594.4 >11031   ............................................................ 11090  

AC190934.4 >169216  ccggatctgcttggaggtgtcgccactggggtcgagagggatggccttaaccgtctccgc 169275 
AC197594.4 >11091   ............................................................ 11150  

AC190934.4 >169276  tggctcgaagttgccggcatgtcgcttcacgtccggcacctctttggagaggttctccat 169335 
AC197594.4 >11151   ............................................................ 11210  

AC190934.4 >169336  gttggcgatgagggcctcggactcggcgagggcctcggcgtactccacgcactccacgtc 169395 
AC197594.4 >11211   ............................................................ 11270  

AC190934.4 >169396  gcattcgaacgcgtgtttgtatgtggggccgacggtgatgaccccgttggggcccggcat 169455 
AC197594.4 >11271   ............................................................ 11330  

AC190934.4 >169456  cttgagcttcaggtaggtgtagttggggacggccatgaacttcgcgtagcatggcctccc 169515 
AC197594.4 >11331   ............................................................ 11390  

AC190934.4 >169516  cagcaccgcgtggtaggttcctcggaacccgaccacctcgaacgtcaaaatcttccttcg 169575 
AC197594.4 >11391   ............................................................ 11450  

AC190934.4 >169576  gaagttggagggcgttccgaagcagacgggaaggtcgagccgtctgaggggctggacgcg 169635 
AC197594.4 >11451   ............................................................ 11510  

AC190934.4 >169636  cttccccggaatgatcccgtggaagggcgcagcgcctgctcggacggaggacagatcgac 169695 
AC197594.4 >11511   ............................................................ 11570  

AC190934.4 >169696  gcgcaggagcctgagggtctcggcgtagatgatgttgaggcagctgcccccatccatcag 169755 
AC197594.4 >11571   ............................................................ 11630  

AC190934.4 >169756  gaccttggtgagcctgacgtcgccgacgatggggtcgacgacgagcgggtatttccccgg 169815 
AC197594.4 >11631   ............................................................ 11690  

AC190934.4 >169816  gctcggcacgtggtcggggtggtcagcttggtcgaaggtgatgggcttgtcggaccagtc 169875 
AC197594.4 >11691   ............................................................ 11750  

AC190934.4 >169876  caggtagactggcgccgccaccttcaccgagcagacctcccggcgctcttgcttgcgatg 169935 
AC197594.4 >11751   ............................................................ 11810  

AC190934.4 >169936  tcgagccgaggcattcgccgcatgccctccgtagatcatgaagcagtcgcggacctcagg 169995 
AC197594.4 >11811   ............................................................ 11870  

AC190934.4 >169996  gaactctcctgcttggtggtcttcccttttgtcgtcatcgcgggccctgccaccctctgc 170055 
AC197594.4 >11871   ............................................................ 11930  

AC190934.4 >170056  gggtggcccggccttgtggaagtggcgccgaagcatgacgcactcctcgagggtgtgctt 170115 
AC197594.4 >11931   ............................................................ 11990  

AC190934.4 >170116  gacgggcccctgatggtaggggcacgactccttgagcatcttgttgaataggttagcacc 170175 
AC197594.4 >11991   ............................................................ 12050  

AC190934.4 >170176  tccggggggctttcgagggttcttgtactcggcggcggcgacaaggtccgcgtcggcggc 170235 
AC197594.4 >12051   ............................................................ 12110  

AC190934.4 >170236  gtcgcgtttcgcttgcgacttcttcttgcctttctttttggcgccgcgcggagtagacgc 170295 
AC197594.4 >12111   ............................................................ 12170  

AC190934.4 >170296  ctcgggggcctcttccgacgggcggccctggggctgcttgtccttttggaagatggcctc 170355 
AC197594.4 >12171   ............................................................ 12230  

AC190934.4 >170356  gaccgcctcctggccagaggcgaacttggtggcgatgtccattagctcgctcgccctggt 170415 
AC197594.4 >12231   ............................................................ 12290  

AC190934.4 >170416  gggggtcttgcgacccaacttgctcaccaggtcgcggcaggtggtgccggcaaggaacgc 170475 
AC197594.4 >12291   ............................................................ 12350  

AC190934.4 >170476  gccgatgacatctgagtcggtgatgttgggcagctcggtgcgctgcttcgagaatcgccg 170535 
AC197594.4 >12351   ............................................................ 12410  

AC190934.4 >170536  gatgtagtcccgaagagactctcccggctgttgccggcagctccggaggtcccaggaatt 170595 
AC197594.4 >12411   ............................................................ 12470  

AC190934.4 >170596  cccggggcgcacgtacgtgccctggaaattgccggcgaaggcttggaccaaatcatccca 170655 
AC197594.4 >12471   ............................................................ 12530  

AC190934.4 >170656  gttggagatctgccccggaggcaggtgctccaaccaggcgcgagcagtgtcggagaggaa 170715 
AC197594.4 >12531   ............................................................ 12590  

AC190934.4 >170716  cagggggaggttgcggatgatgaggttgtcgtcgtctgttccacccagttggcaggccag 170775 
AC197594.4 >12591   ............................................................ 12650  

AC190934.4 >170776  gcggtagtctgcgagccacagttccggtctcgtttcccccgagtacttcgtgatagtagt 170835 
AC197594.4 >12651   ............................................................ 12710  

AC190934.4 >170836  cgggggtcggaaccgggccgggaacggcgcccgtcggatggcccgactgaaggcctgcgg 170895 
AC197594.4 >12711   ............................................................ 12770  

AC190934.4 >170896  accgggtggtttgggcgagggactccgatcctccccgctgtcgtagcgtcccccacgcct 170955 
AC197594.4 >12771   ............................................................ 12830  

AC190934.4 >170956  ggggttgtagcctcggcgcaccctttcgtcgaggtgagcccgacggtcgcgacgatggtg 171015 
AC197594.4 >12831   ............................................................ 12890  

AC190934.4 >171016  ctcgttgccgaggtggcccggggccgcaggcgcggtgttgcgcgtgcgcccggtgtagac 171075 
AC197594.4 >12891   ............................................................ 12950  

AC190934.4 >171076  cgaggcttcccgcatgaatcgggaagtcgcggcatgaggttccgaggggtatccctgcct 171135 
AC197594.4 >12951   ............................................................ 13010  

AC190934.4 >171136  tcgggaggcagagctctcggcccgtcgggccgcagcgccttccagaagattcttgagctc 171195 
AC197594.4 >13011   ............................................................ 13070  

AC190934.4 >171196  tccctggattcgccgaccctcggtggttgacggctccggcatcgcgcggaggagcatcgc 171255 
AC197594.4 >13071   ............................................................ 13130  

AC190934.4 >171256  cgcggctgccaggttctgaccgacctcgctggatgcgggtggcggcctgaccctgacgtc 171315 
AC197594.4 >13131   ............................................................ 13190  

AC190934.4 >171316  gttggcgacgcggtgctggaaaccctggggcaggtgacgtatttctccggccgggggctg 171375 
AC197594.4 >13191   ............................................................ 13250  

AC190934.4 >171376  gcccgcccatacctgcccgacgtcccggcggatcgactcgagcgctcctgctccctcgtc 171435 
AC197594.4 >13251   ............................................................ 13310  

AC190934.4 >171436  gagcctggcctgcgccccgcggacttgctcgagctgtgggtcgtgaccccccgccggaac 171495 
AC197594.4 >13311   ............................................................ 13370  

AC190934.4 >171496  ggggaccacagctagctcccgcgggatgtcggtgcgaggcaccggcctagggagatcacc 171555 
AC197594.4 >13371   ............................................................ 13430  

AC190934.4 >171556  gtccttcggcatgccgaggtggttgcctttggagggatcccctagctcgacgtggaaaca 171615 
AC197594.4 >13431   ............................................................ 13490  

AC190934.4 >171616  ttcgcggctcgggccgcagtcctcatcgtcaaggctgcggctaccgccggaatagtcgga 171675 
AC197594.4 >13491   ............................................................ 13550  

AC190934.4 >171676  gaggcagtagtcacatgcggtcataaagtcccgcatggcactagggttgccaaacccaga 171735 
AC197594.4 >13551   ............................................................ 13610  

AC190934.4 >171736  gaaatcccgacagatgatgggatcatcatcttcctcggacccagagggtccgtaggtcga 171795 
AC197594.4 >13611   ............................................................ 13670  

AC190934.4 >171796  gacgtccgtcaatcggtcccaacgcgaccgcatacgaaaccccagaggggttgcactcgc 171855 
AC197594.4 >13671   ............................................................ 13730  

AC190934.4 >171856  ctcaacgggagcgcccgccaaagcgaggtcgctaggcaggttgaggccgagtcgaaatga 171915 
AC197594.4 >13731   ............................................................ 13790  

AC190934.4 >171916  cgtaggattggaatcagtcagtaccttttgatcgacgaggagcgacatagtcacgtcggg 171975 
AC197594.4 >13791   ............................................................ 13850  

AC190934.4 >171976  gactgattgcgtcgtcatcttaggtacgagggcgacgtcctgtaggccctccgcgagcgc 172035 
AC197594.4 >13851   ............................................................ 13910  

AC190934.4 >172036  gctggcgtcgtccacttgctcgggattggcgtgtcgcggggggacggctctcgccttcgt 172095 
AC197594.4 >13911   ............................................................ 13970  

AC190934.4 >172096  ctcaaacgcgaagtcgacgcccgacgcgccccccgttggggcgctggggacgtcgattcg 172155 
AC197594.4 >13971   ............................................................ 14030  

AC190934.4 >172156  ctcgacagccgacgaagcgcggcctcccgcttggccttggttgccccgcctcctcctccg 172215 
AC197594.4 >14031   ............................................................ 14090  

AC190934.4 >172216  ttggcggggagaggacggggtgagctcgaatgtcgttcttccaccatgcggggaagatgt 172275 
AC197594.4 >14091   ............................................................ 14150  

AC190934.4 >172276  catcgattccgccgccggcgggcgggttgtcggccgccattgtcgtcgtcgcgcggcggt 172335 
AC197594.4 >14151   ............................................................ 14210  

AC190934.4 >172336  ggaaggagtatcatgtcttagctgccgtcgagggacatgaactcaagactcccgaaacgg 172395 
AC197594.4 >14211   ............................................................ 14270  

AC190934.4 >172396  agcaccgtctcgggttggagaggttgttggagactgcccatctggagcttgacgggaaac 172455 
AC197594.4 >14271   ............................................................ 14330  

AC190934.4 >172456  tgctcgtcaacacgcagcgtgcccctacctggcgcgccaactgtcggcgtctcgagaccg 172515 
AC197594.4 >14331   ............................................................ 14390  

AC190934.4 >172516  gggggtccctaaggccgacgagtgagtgtgccgcgtgccccagcccagagggggcgagcg 172575 
AC197594.4 >14391   ............................................................ 14450  

AC190934.4 >172576  cgtgggcgagcgcgaaggggggaagcgaggtggccggagacgggcgtgagagaggtggaa 172635 
AC197594.4 >14451   ............................................................ 14510  

AC190934.4 >172636  atcccgcggccttcgtgttcgtcccgcgcccaggtcgggtgcgcttgcagtagggggtta 172695 
AC197594.4 >14511   ............................................................ 14570  

AC190934.4 >172696  caagcgtccacgcgggtgagggaagcgagcggccccaagagagcgcctgccccgtcctcg 172755 
AC197594.4 >14571   ............................................................ 14630  

AC190934.4 >172756  tccccgcgcggccaaccttctctaagaaggcactggtccttccttttataggcgtaagga 172815 
AC197594.4 >14631   ............................................................ 14690  

AC190934.4 >172816  gaggatccaggtgtacaatgggggtgtagcagagtgctacgtgtctagcgggggagagct 172875 
AC197594.4 >14691   ............................................................ 14750  

AC190934.4 >172876  agcgccctaagtacatgccaatgtggcagccggagagatcttggcaccctgctggtgtga 172935 
AC197594.4 >14751   ............................................................ 14810  

AC190934.4 >172936  tgtcgtggctgtcggaggagcaatggagcctggcggagggacagctgtcggagcggttga 172995 
AC197594.4 >14811   ............................................................ 14870  

AC190934.4 >172996  gtccttgctgacgtccccctacttccataagggagctgagagccgccgtcgtcacagggc 173055 
AC197594.4 >14871   ............................................................ 14930  

AC190934.4 >173056  tagcggggcgccatcattgcctatctggcggagctagccagatgggacaccggtcttgtt 173115 
AC197594.4 >14931   ............................................................ 14990  

AC190934.4 >173116  ctctgtggcccgagtcggctcggggtagagtgatgatggcacttcctgtggacgtggcgg 173175 
AC197594.4 >14991   ............................................................ 15050  

AC190934.4 >173176  gcctgtgccctaggtcgggcgacgtggaggctcctccgaagccgaggtcgagtctgtctt 173235 
AC197594.4 >15051   ............................................................ 15110  

AC190934.4 >173236  ccatggtcgaggccgagcccgagctcctgggtcgggcgaggcggaggttgttcggcagag 173295 
AC197594.4 >15111   ............................................................ 15170  

AC190934.4 >173296  gccagggcggagtccgagccctggggtcggacgaagcggagttcgtcgtcttctggggct 173355 
AC197594.4 >15171   ............................................................ 15230  

AC190934.4 >173356  gagctcgagtctgagccctgggtcggggcggaagcggagttcgccatcttccggggcctt 173415 
AC197594.4 >15231   ...........................-...-............................ 15288  

AC190934.4 >173416  agcccgtgtccgagccctggggtcgggcggagcggagttcgccgtcttccggggccttag 173475 
AC197594.4 >15289   ..................-......................................... 15347  

AC190934.4 >173476  cccgagtccgagccctgggtcgggcggagcggagttcgccgtcttccggggctttagccc 173535 
AC197594.4 >15348   ............................................................ 15407  

AC190934.4 >173536  gagtccgagccctgggtcgggcggagcggagttcaccgtcttccggggctttagcccgag 173595 
AC197594.4 >15408   ............................................................ 15467  

AC190934.4 >173596  tccgagccctgggtcgggcagagcggagttcgccatcttctggggctttagcccgagtcc 173655 
AC197594.4 >15468   ............................................................ 15527  

AC190934.4 >173656  gagccctgggtcgggcggagcggagttcgccgtcttccggggctttagcccgagtccgag 173715 
AC197594.4 >15528   ............................................................ 15587  

AC190934.4 >173716  ccctgggtcgggcagagcggagttcgccatcttccggggctgagcccgagtccgagccct 173775 
AC197594.4 >15588   ............................................................ 15647  

AC190934.4 >173776  gggtcgggcggagcttcctatggcgcctttggcaaggcctgactgcctgtcagtctcact 173835 
AC197594.4 >15648   ............................................................ 15707  

AC190934.4 >173836  ctgtcaagtggcactgcagtcggagtggcgcaggcggcgctgtccttttgtcagaccagt 173895 
AC197594.4 >15708   ............................................................ 15767  

AC190934.4 >173896  cagtggagcggcgaagtgacggcggtcacttcggctctgccggagggcgcgtgtcaggat 173955 
AC197594.4 >15768   ............................................................ 15827  

AC190934.4 >173956  aaaggtgtcaggccacctttgcgttaaatgctcctgcgactcggtcggtcggcgcggcga 174015 
AC197594.4 >15828   ............................................................ 15887  

AC190934.4 >174016  ttcagtcagggctgcttcttagcgaaggcaaggcctcgggcgagccggagatgtgtccgc 174075 
AC197594.4 >15888   ............................................................ 15947  

AC190934.4 >174076  cgttaaaagggggggcctcgggcgagacggaaacccctcggggtcggctgcccttgcccg 174135 
AC197594.4 >15948   ............................................................ 16007  

AC190934.4 >174136  aggctaggctcaggcgaggcgtgatcgagtcgctcgtatggactgatccctgacttaatc 174195 
AC197594.4 >16008   ............................................................ 16067  

AC190934.4 >174196  gcacccatcaggcctctgcagctttatgctgatggcggttaccagctgagaattaggcgt 174255 
AC197594.4 >16068   ............................................................ 16127  

AC190934.4 >174256  cttgagggtacccctaattatggtccccgacaggtagtaaagaccctcgtggctagcaat 174315 
AC197594.4 >16128   ............................................................ 16187  

AC190934.4 >174316  atgctacgaatgcttcttgagggatcggggaaatacaacaataagatatgaagattgtaa 174375 
AC197594.4 >16188   ............................................................ 16247  

AC190934.4 >174376  atatttttggtcattccttggaggcttggacatcatagaatctattgataggaaggcacc 174435 
AC197594.4 >16248   ............................................................ 16307  

AC190934.4 >174436  aaggactgtcattttggcctagactctaatccgtaagtgtgtttatatgatgacagaata 174495 
AC197594.4 >16308   ............................................................ 16367  

AC190934.4 >174496  gaacaatggttaaggcagcggcagccgtaaatagtagagtagaactaaccacaaatgctg 174555 
AC197594.4 >16368   ............................................................ 16427  

AC190934.4 >174556  aaaagaaaatttgtgaaacgaaatgcatatgactttcacttacggaaagcaagatgtgtc 174615 
AC197594.4 >16428   ............................................................ 16487  

AC190934.4 >174616  ttcctgtctcagcagtcagcacccatcggaggttgtcgtcgctctcggttttgtccgcgg 174675 
AC197594.4 >16488   ............................................................ 16547  

AC190934.4 >174676  gagtgggcgacggcgacggatttcctgtcacccagtaggagccatcccagtggcacgatg 174735 
AC197594.4 >16548   ....................-.........a............................. 16606  

AC190934.4 >174736  gtcgtctctggctccaccggagcaacccatggaagggatttcggccgtttgaagattgag 174795 
AC197594.4 >16607   ............................................................ 16666  

AC190934.4 >174796  tacagcagcggtggccccatgataccagcgtcgcctacaaatcgtagataatgaagcggc 174855 
AC197594.4 >16667   ............................................................ 16726  

AC190934.4 >174856  tgggcagcgtcgaaggtgtagtcatcgccatcatcatccatcttcatgtccgtgtgttcc 174915 
AC197594.4 >16727   ............................................................ 16786  

AC190934.4 >174916  tgtatgttgctactgctcgcattcgatccccatggtcggacgacgatcacgaagatgact 174975 
AC197594.4 >16787   ............................................................ 16846  

AC190934.4 >174976  gagaagtaagccactaccacatcccatggtcgaagggaggtgtgcgggtgagggtagcgg 175035 
AC197594.4 >16847   ............................................................ 16906  

AC190934.4 >175036  cagcgggtggaggttggacgaggacgcagacctaggcgtcgacgccccgggcggaaggga 175095 
AC197594.4 >16907   ............................................................ 16966  

AC190934.4 >175096  ggtgtgcgggtgagggtaggagatggaggtaatggcggcgtcgatctgcgtgttggtgca 175155 
AC197594.4 >16967   ............................................................ 17026  

AC190934.4 >175156  tcttttctcatgtctgcttcgtgttctatctagaaagatccggtcgtgtctggtgtggcc 175215 
AC197594.4 >17027   ............................................................ 17086  

AC190934.4 >175216  gacacaacagatcgtacgcttgtgctgtagaaatcaaaggatgcagagaaggttattggc 175275 
AC197594.4 >17087   ............................................................ 17146  

AC190934.4 >175276  attgatggccgttgttgacggatcgtgtgacttaaaattgaagtgatgatgtggccacat 175335 
AC197594.4 >17147   ............................................................ 17206  

AC190934.4 >175336  gagatgcgacctttgcgtcctcctttaatatatagaatagaatgggccagctgcatgcgt 175395 
AC197594.4 >17207   ............................................................ 17266  

AC190934.4 >175396  ttgtatgagctttcattctacgaatggttgctgcttatgtttttatgtcgttggcatcta 175455 
AC197594.4 >17267   ............................................................ 17326  

AC190934.4 >175456  tctcttgaattacagagtttttatttggtgttcacgggagtttttttaaaaaaattgcag 175515 
AC197594.4 >17327   ............................................................ 17386  

AC190934.4 >175516  ccaagttttaaaactgaatattgatgtaaccatggaatgtcatggacgggacacactggc 175575 
AC197594.4 >17387   ............................................................ 17446  

AC190934.4 >175576  tactactataagtctataactataactgtgctgtagacttgtataaacagcaaataatgg 175635 
AC197594.4 >17447   ............................................................ 17506  

AC190934.4 >175636  catccgatgtgaagcgacagtgtattatatgtattgtactgtgtcatagagagctaatgc 175695 
AC197594.4 >17507   ............................................................ 17566  

AC190934.4 >175696  caaaatatctgatggaatgtatgtgtgccctacttaacgggaatggataataatttggat 175755 
AC197594.4 >17567   ............................................................ 17626  

AC190934.4 >175756  tcgattttctttattttattaggttctcaccgaatatggttctcagttatgacttccagg 175815 
AC197594.4 >17627   ............................................................ 17686  

AC190934.4 >175816  cccagtaaaactttatttttttctactagtagtagtaattagtcatgtatataaataacg 175875 
AC197594.4 >17687   ............................................................ 17746  

AC190934.4 >175876  gtgcccacaagagttcgtcagaatttatacaactgttttcttatttatttctttaacatt 175935 
AC197594.4 >17747   ............................................................ 17806  

AC190934.4 >175936  ttcccttctacgcacagtaggagataatgtcaggcgttgacggtgtacatatatttgttt 175995 
AC197594.4 >17807   ............................................................ 17866  

AC190934.4 >175996  ttttaaaggcatagtggcgtatgtgcaaacacttcctcacaggaaggacactaagaaaca 176055 
AC197594.4 >17867   ............................................................ 17926  

AC190934.4 >176056  tggtccatggcccattataaagcaccgccacaaagcccaaatagcagttcgtcggtggag 176115 
AC197594.4 >17927   ............................................................ 17986  

AC190934.4 >176116  caagcatcgcgctaggcaacaggcaaacagtttgtcccacctcgtccagtcacaaaataa 176175 
AC197594.4 >17987   ............................................................ 18046  

AC190934.4 >176176  aagcacgagttataaaccaaaccggaagcaccgcatcgtctcttcggagacatccgataa 176235 
AC197594.4 >18047   ............................................................ 18106  

AC190934.4 >176236  aattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatc 176295 
AC197594.4 >18107   ............................................................ 18166  

AC190934.4 >176296  gagaaatggtccaaatttttttgcggatttgcgcactggtcccctggtgttcgcgactag 176355 
AC197594.4 >18167   ............................................................ 18226  

AC190934.4 >176356  gtcctcccgcactagtttttcttcacgatttagccctcgcggatttctggcagcccgcag 176415 
AC197594.4 >18227   ............................................................ 18286  

AC190934.4 >176416  ccgtttgtgccagaaactttttgttcgccgctaggcccttacttttatgcttccttttgc 176475 
AC197594.4 >18287   ............................................................ 18346  

AC190934.4 >176476  aggcttgcccctaacatttttttcctttagcccttcagttttctcttctgtacaattata 176535 
AC197594.4 >18347   ............................................................ 18406  

AC190934.4 >176536  ctctgcagccccaggaaagtttatattttgctcttacgttcaagtttgttcgcaacggac 176595 
AC197594.4 >18407   ............................................................ 18466  

AC190934.4 >176596  tgctgtgctagaacaccaccatgttatacggtagaattttgcaatgatacagcgaacctt 176655 
AC197594.4 >18467   ............................................................ 18526  

AC190934.4 >176656  tttctctctttattaaaagtcaaaatctctgctgctcctcttgtccaccaccttcaccac 176715 
AC197594.4 >18527   ............................................................ 18586  

AC190934.4 >176716  ggctatagatgaccaataagtacgagacccgcgagcccagcacaaagcccgttgtttaga 176775 
AC197594.4 >18587   ............................................................ 18646  

AC190934.4 >176776  tctaatccgaacccgtcacaaataagtgggtcgggctcggacagaaaaataggtacggtg 176835 
AC197594.4 >18647   ............................................................ 18706  

AC190934.4 >176836  ggctagctcggcatggctcgtttaactctaagcccgcttttcggcccgcttttttcgtgc 176895 
AC197594.4 >18707   ............................................................ 18766  

AC190934.4 >176896  taaccgtttagacctgttgcgagccgagcttggacagaaaatcgagccggcgggcttaga 176955 
AC197594.4 >18767   ............................................................ 18826  

AC190934.4 >176956  cggcccggcccggttttctaaccgtgcctagcgggccgtgcggcccgtttggccatctct 177015 
AC197594.4 >18827   ............................................................ 18886  

AC190934.4 >177016  aaccacgtcacagccctcctccccccttcgccgttaatctcgcgcccgccctcgcctgtg 177075 
AC197594.4 >18887   ............................................................ 18946  

AC190934.4 >177076  tctgcctttgacattgtgacaccccagtgtcacctagggtttctctagcaatgccaaacc 177135 
AC197594.4 >18947   ............................................................ 19006  

AC190934.4 >177136  cagaaccattattttatgtgaaccaaagtaagcataagcatcaaaataacttaagtaaga 177195 
AC197594.4 >19007   ............................................................ 19066  

AC190934.4 >177196  aggaattcaccaagcatatacttaaaagtatcatgatcaaaacaattgagtctttaaaaa 177255 
AC197594.4 >19067   ............................................................ 19126  

AC190934.4 >177256  ggaaagaatgtgtaaccctaataaaaaccctaagtaagccccatgagcaaaattcaagaa 177315 
AC197594.4 >19127   ............................................................ 19186  

AC190934.4 >177316  aataaggaaaagggtatgaaaaatttaaaattatgacttgagccaattataaaaattaaa 177375 
AC197594.4 >19187   ............................................................ 19246  

AC190934.4 >177376  gtatatttaataagcaacaagaaaggttcagaaagcttagccaaaataactcaagcaaat 177435 
AC197594.4 >19247   ............................................................ 19306  

AC190934.4 >177436  tcccaaatcagcccttgaactatgaagccttggaggaattcagatttctgaatttctgaa 177495 
AC197594.4 >19307   ............................................................ 19366  

AC190934.4 >177496  attcagacctctttccaaagatcaactgcgttctctgtttttcaaaactcaaaactatga 177555 
AC197594.4 >19367   ............................................................ 19426  

AC190934.4 >177556  gatccaaatatcaaagttgtgccaaattcccttgaacacatcctggaaaagtttgaactc 177615 
AC197594.4 >19427   ............................................................ 19486  

AC190934.4 >177616  aaaccaaattcatttgacacggttttggcacagtttgacctcgggaccaggcattctgac 177675 
AC197594.4 >19487   ............................................................ 19546  

AC190934.4 >177676  actggcaccttggtgacgctacaactccctgtccctagcctaaaaccgtgcgacgtccat 177735 
AC197594.4 >19547   ............................................................ 19606  

AC190934.4 >177736  tcacaaaagacaaagcatggtcaggtgaacaaatccttcacagcgatcttgcccaaattc 177795 
AC197594.4 >19607   ............................................................ 19666  

AC190934.4 >177796  acgaagatttgcacccaaccagcgcttgaacatggacagaagcaacgggaacacgtgttc 177855 
AC197594.4 >19667   ............................................................ 19726  

AC190934.4 >177856  gaccgtggctgacacccccggttcacgcccgttcgcgcaccgcgcctcccattgcacgcc 177915 
AC197594.4 >19727   ............................................................ 19786  

AC190934.4 >177916  cgcgcgcgctcgccggtccacgaccgcccgtgcaccgcgtcgtgcctataaagccttccc 177975 
AC197594.4 >19787   ............................................................ 19846  

AC190934.4 >177976  aggcgcgccccacttcgccccgcactcaccagcaccggccggccaccttcccttagctcc 178035 
AC197594.4 >19847   ............................................................ 19906  

AC190934.4 >178036  ggtgagctcaattccgcccaccattgccgccagagctttggccaccgtggccagcccact 178095 
AC197594.4 >19907   ............................................................ 19966  

AC190934.4 >178096  ccagccacccccaagtcgagccagtgcttcggctagctccgccagtagcccgtgaagctt 178155 
AC197594.4 >19967   ............................................................ 20026  

AC190934.4 >178156  gccaagctctcggaccaggccggacttcaccggaggcccgagatcgacctcaccggactt 178215 
AC197594.4 >20027   ............................................................ 20086  

AC190934.4 >178216  cggtccttcgccgccgcgcgtggacagagctcaccggtgagtctccgcccaattccttgc 178275 
AC197594.4 >20087   ............................................................ 20146  

AC190934.4 >178276  acccatatcttctctggcatcccgtgaacctctctgacccatccaattgttctatctcgc 178335 
AC197594.4 >20147   ............................................................ 20206  

AC190934.4 >178336  cgtgagtaggccggacccctcgccgccgacgagcatccccgcctgcgcgcgtggaccgac 178395 
AC197594.4 >20207   ............................................................ 20266  

AC190934.4 >178396  cgactccggccatccccgacggcgacccgcacaccgttgtgatccccaagacctccccta 178455 
AC197594.4 >20267   ............................................................ 20326  

AC190934.4 >178456  cgtcctcgaccacttcaccggagccatctcgccgccggtaagcccctcctccctttcttc 178515 
AC197594.4 >20327   ............................................................ 20386  

AC190934.4 >178516  cgccgcggttactatttaagttagaagaaggacctcgggttaggatttgtagaacccgag 178575 
AC197594.4 >20387   ............................................................ 20446  

AC190934.4 >178576  gggttttctgtaacgtcagtgactcatgtgaatagtaacctaaggaccaatccgcgaaga 178635 
AC197594.4 >20447   ............................................................ 20506  

AC190934.4 >178636  aaacttaagaacccgccagggaccccagtgcaaagtggatttccattaaaccaattttgt 178695 
AC197594.4 >20507   ............................................................ 20566  

AC190934.4 >178696  taatctttttaaaataaccatagaacttagaaaacccataacttgatgaattc 178748 
AC197594.4 >20567   ..................................................... 20619

Events

Type

Date

Whodid

Comment

295577

InitHasAlign

01/15/2014 17:25:28

cgi_chen

find_overlapId: find_overlap_app.cpp 404199 2013-06-20 22:08:27Z rafanovi $ built Aug  1 2013. Toolkit wrapper  using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib
Info: Blast Including ID: 545480123
Info: Running Blast Filter: 0
Info: Determined ID: gi|545480123 needs Merging.
Info: Blast Warning: Empty Query Set
Info: Determined ID: gi|545480123 needs Merging.
Info: Blast Warning: Empty Query Set
Info: Determined ID: gi|545480123 needs Merging.
Info: Best Rank: 1 in  for 545480123 of 1
Info:  NG returned 1 alignments

tpf_solo for TPF_updated_1_v2

381407

CreateSwitchPt

12/19/2014 15:59:42

chenhc

tpf_m_BuilderId: t Toolkit wrapper version: built Nov 13 2014 using /home/boukn/code/toolkit/c++/GCC481-ReleaseMT64/lib

BAC Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
CH201-116N4				AC197594.4	100%	pos 67353 (F-)
CH201-124C4	AC197594.4	99.85%	pos 82582 (R-)	AC190934.4	100%	pos 65713 (F+)
CH201-200I21	AC197594.4	100%	pos 43038 (R+)
CH201-200I21	AC197594.4	100%	pos 42686 (R+)
CH201-304H12				AC190934.4	99.72%	pos 127694 (F-)
CH201-400M18				AC190934.4	99%	pos 128093 (F-)
CH201-400M18				AC190934.4	100%	pos 128153 (F-)
CH201-42E18	AC190934.4	99.69%	pos 18376 (R-)
CH201-441O22				AC190934.4	100%	pos 91260 (F+)
CH201-535P23				AC190934.4	99.81%	pos 125610 (F+)
CH201-538G23				AC190934.4	100%	pos 150383 (F+)
CH201-540I18				AC197594.4	99.86%	pos 45384 (F+)
CH201-540I18				AC197594.4	100%	pos 45435 (F+)
CH201-549D13				AC190934.4	99.74%	pos 84205 (F-)
CH201-560N1	AC190934.4	100%	pos 37263 (R-)
CH201-567P10				AC190934.4	99.53%	pos 36604 (F-)
CH201-576G10				AC190934.4	99.63%	pos 56059 (F+)
ZMMBBb-147D1				AC190934.4	98.95%	pos 68172 (F+)
ZMMBBb-152J5	AC190934.4	99.83%	pos 65788 (R-)
ZMMBBb-161H24	AC190934.4	99.11%	pos 25583 (R-)
ZMMBBb-231O15				AC197594.4	97.9%	pos 34025 (F+)
ZMMBBb-289N7				AC190934.4	99.71%	pos 25559 (F-)
ZMMBBb-298O11				AC190934.4	99.14%	pos 94173 (F+)
ZMMBBb-300B18				AC190934.4	99.41%	pos 86454 (F-)
ZMMBBb-365N6				AC197594.4	99.16%	pos 62987 (F-)
ZMMBBb-386P1	AC190934.4	99.07%	pos 83873 (R+)
ZMMBBb-416A12	AC197594.4	98.95%	pos 68690 (R-)
ZMMBBb-618G23				AC190934.4	98.46%	pos 26428 (F-)

Fosmid Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
Z_AI-1002J3	AC190934.4	100%	pos 33797 (R+)
Z_AI-1036B8				AC190934.4	100%	pos 76881 (F+)
Z_AI-1049G4				AC197594.4	98.15%	pos 77297 (F+)
Z_AI-1154J14	AC190934.4	100%	pos 21642 (R+)
Z_AI-1203P19				AC190934.4	100%	pos 34793 (F-)
Z_AI-1236E18				AC190934.4	100%	pos 82002 (F+)
Z_AI-1244B23	AC190934.4	100%	pos 66499 (R-)
	AC190934.4	100%	pos 68089 (R-)
	AC190934.4	100%	pos 94160 (R-)
Z_AI-317H18	AC190934.4	97.62%	pos 68264 (R+)
Z_AI-317H18	AC190934.4	97.62%	pos 94335 (R+)
Z_AI-331H8	AC197594.4	99.45%	pos 135931 (R+)
Z_AI-458J10	AC197594.4	98.55%	pos 38129 (R+)
Z_AI-493P24				AC197594.4	100%	pos 136590 (F+)
Z_AI-532C11				AC190934.4	100%	pos 18435 (F+)
Z_AI-535K7	AC197594.4	99.12%	pos 43259 (R-)
Z_AI-538G8				AC190934.4	100%	pos 28423 (F-)
Z_AI-560O15	AC197594.4	99.64%	pos 70430 (R-)
Z_AI-561E8	AC190934.4	100%	pos 31903 (R-)
Z_AI-565B2	AC197594.4	100%	pos 64418 (R+)
Z_AI-615J20				AC197594.4	100%	pos 66151 (F+)
Z_AI-662F1	AC190934.4	100%	pos 39273 (R-)
Z_AI-737A10				AC190934.4	99.87%	pos 83570 (F-)
Z_AI-761N17	AC190934.4	100%	pos 79426 (R-)
Z_AI-820J5	AC190934.4	100%	pos 9219 (R-)
Z_AI-864K6	AC197594.4	99.87%	pos 63712 (R-)	AC197594.4	99.75%	pos 44822 (F+)
Z_AI-876M8				AC190934.4	100%	pos 27862 (F-)
Z_AI-905L3				AC197594.4	97.87%	pos 69626 (F+)
Z_AI-925K6	AC190934.4	99.84%	pos 115366 (R+)
Z_AI-958E6				AC190934.4	100%	pos 26207 (F-)

Repeats

acc	start	stop	repeat id	strand	name	family	class

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Curator Links

Alignment for AC190934.4 and AC197594.4

Alignment Summary

Alignment 1 of 1