Alignment last updated: 01/15/2014 17:13:59
Join Legend
Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.6%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.6%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Alignment for AC177839.5 and AC190808.3
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AC177839.5 Zea mays chromosome 1 clone CH201-56L20, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces [htgs_limited_order]
Length: 200,931 bp
AC190808.3 Zea mays chromosome 1 clone ZMMBBb-502J8, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces [htgs_limited_order]
Length: 148,334 bp
Alignment Summary
Join evaluation: Alignment count: 1
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(half-dovetail of >50bp)
Alignment 1 of 1
AC177839.5 : + : 158997..167662 AC190808.3 : + : 1..8663 Mismatches = 0, Gaps = 5, Length = 8667 Percent identity = 100% Score = 1.597e+04 bits (8649), Expect = 0 3 BAC and 0 Fosmid bridging clones. 3 BAC and 0 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AC177839.5 >158997 aagcttgtcgctggtgctgtaggcattgctgctcctcctcgagcttgttgtgcaactccc 159056 AC190808.3 >1 ............................................................ 60 AC177839.5 >159057 ggagttgctcgaggtgagccttatggctcctttggggagtctgagcctcgtctgggttac 159116 AC190808.3 >61 ............................................................ 120 AC177839.5 >159117 gtggtggaggttgatcaccttctcgcagcatgccgaggtgatctccttcctcggggatct 159176 AC190808.3 >121 ............................................................ 180 AC177839.5 >159177 cggggtcgacgtggaagtattcccgagtcggatcgtagccctcaccaccagagttgtaac 159236 AC190808.3 >181 ............................................................ 240 AC177839.5 >159237 ccttcgagctttcagagagcatctcgtcacatgcatacaaaaattgtagcatgtacttgg 159296 AC190808.3 >241 ............................................................ 300 AC177839.5 >159297 gatcccatagcctagagaagtccagggcaaagcttgggtcgttttcctcctcagagtcca 159356 AC190808.3 >301 ............................................................ 360 AC177839.5 >159357 ggcaccctgaggggaagggaagcccgacgtacatccaggtgacggagctggtgtcgaaac 159416 AC190808.3 >361 ............................................................ 420 AC177839.5 >159417 tcggttgtaaagggatggggttgaacacagacggttcttccctagccccctccatgtctc 159476 AC190808.3 >421 ............................................................ 480 AC177839.5 >159477 tccagtgagtgtccggctcctcccgacccgtaggtgggagggcccgtgtagctgacaccg 159536 AC190808.3 >481 ............................................................ 540 AC177839.5 >159537 tttgctcaacgccgtgggggactggtgtctcccctgtcggaggaggtggtgctaggaatg 159596 AC190808.3 >541 ............................................................ 600 AC177839.5 >159597 ttggtgcaggtgcagctggcggtgctctgggtgaaatgttgacactgtctaggtcccttg 159656 AC190808.3 >601 ............................................................ 660 AC177839.5 >159657 agagggactcaatgccgtcatccataccggtggcacctccagtgcatggagtgccctagg 159716 AC190808.3 >661 ............................................................ 720 AC177839.5 >159717 tggcacgatcgcggttgctccgtctttgcctcctgcggcgagaagggcggcgacgagagc 159776 AC190808.3 >721 ............................................................ 780 AC177839.5 >159777 ttggacgctcaagagggacaggtgggaggagtatcatgtcatactcgatgccgagggaca 159836 AC190808.3 >781 ............................................................ 840 AC177839.5 >159837 tgaactcaagactcccgaacctaatcatcgtcccaagcttgagcgggtggtggaaacctg 159896 AC190808.3 >841 ............................................................ 900 AC177839.5 >159897 ccatctagagtgctggcgataattgggagtgtttcacacgactagcccctacctggcgcg 159956 AC190808.3 >901 ............................................................ 960 AC177839.5 >159957 ccaactatcggtgtttggaccgcgggtccttaaccaactagtaaatgtgccgcatggcca 160016 AC190808.3 >961 ............................................................ 1020 AC177839.5 >160017 actctagatggtgtgggagaagatacaagcaactatccttgttcgggctacacaaggccc 160076 AC190808.3 >1021 ............................................................ 1080 AC177839.5 >160077 tagatctagatgagaggatgaggcttatattactcgcaccgtggtgcctatagtaggggt 160136 AC190808.3 >1081 ............................................................ 1140 AC177839.5 >160137 ttacaagcacagtgggagaggggaagtccccaagtcccttgagatgattgaggcaagtgc 160196 AC190808.3 >1141 ............................................................ 1200 AC177839.5 >160197 caatatctaagacagaatgggagagcgagcgttcgtctacgtgtgtcgatccctcgtccg 160256 AC190808.3 >1201 ............................................................ 1260 AC177839.5 >160257 tggagggaccactaccctatttatacaccaaggggatcatccgcagtgaagctgagtctt 160316 AC190808.3 >1261 ............................................................ 1320 AC177839.5 >160317 gtatttgaaggagagatgccctggcatctgatgtgacggcaaacagtgcagtagattcgt 160376 AC190808.3 >1321 ............................................................ 1380 AC177839.5 >160377 gcatgctgacttctcgtagagagctgaggccgagaccgaggggtcgtccgtacgcccgag 160436 AC190808.3 >1381 ............................................................ 1440 AC177839.5 >160437 ctcctgagggagaggttgcccatgccgtagtggttgtaacagcgccggggtatgggccaa 160496 AC190808.3 >1441 ............................................................ 1500 AC177839.5 >160497 aggctgcttacggggtgcgtcatcgtcctaacgcatgatgacgtcgagattccctgctac 160556 AC190808.3 >1501 ............................................................ 1560 AC177839.5 >160557 actcatcgagattagagcccctgcttgattgatgtggaagtcttctcgaggtgctggccg 160616 AC190808.3 >1561 ............................................................ 1620 AC177839.5 >160617 agccgtccctcgatgtacgctatagtcaggcggagtggctgtctgcgagattagcggtgt 160676 AC190808.3 >1621 ............................................................ 1680 AC177839.5 >160677 agttggtggacgagaccgagctcgggcgaggcgaagaattcgctcgagggctgagcttga 160736 AC190808.3 >1681 ............................................................ 1740 AC177839.5 >160737 tgtcgagcgaggtggagatattccacctgaaggcccattcgctcggcttgtcgtattagg 160796 AC190808.3 >1741 ............................................................ 1800 AC177839.5 >160797 tgtcccatcgagggcgttaggtggcgtgcgcacgctgttgcgtaggtgtaatcatgctac 160856 AC190808.3 >1801 ............................................................ 1860 AC177839.5 >160857 tgcaccagacatgatcgatgtcttgtccgtcactgtgcttcgccgccacggcgtgggttg 160916 AC190808.3 >1861 ............................................................ 1920 AC177839.5 >160917 gcacacgcattaaatgcgcgtgtcccctgcctgttttcgggtgcccttgtccaatctgcc 160976 AC190808.3 >1921 ............................................................ 1980 AC177839.5 >160977 tgaggctggctcgggcgagacggactgagcgacggtgacatcgggcgaggcggagtgagt 161036 AC190808.3 >1981 ............................................................ 2040 AC177839.5 >161037 ggcgttgacctcgagcgaggcggagccctgctcgaggtgggagactctcagtgggatgtc 161096 AC190808.3 >2041 ............................................................ 2100 AC177839.5 >161097 tcagttttttataggtggctcgactgtcaccccttaggagtttagcccttatttctctca 161156 AC190808.3 >2101 ............................................................ 2160 AC177839.5 >161157 gttcattcgtttgggggataattcgggtgtccctaattatcacccccgacactatgtctt 161216 AC190808.3 >2161 ............................................................ 2220 AC177839.5 >161217 tgtaaacttttctcacagggtacatgttaatcaacatagaatataattttattgtttaat 161276 AC190808.3 >2221 ............................................................ 2280 AC177839.5 >161277 cacctaagacttcagaaaactatatcttttcaaccataactccgattttagtggtactcg 161336 AC190808.3 >2281 ............................................................ 2340 AC177839.5 >161337 aacatacgatctcgtagcagcgcgtagaatattcctacatagtttgttctcgtgtttggt 161396 AC190808.3 >2341 ............................................................ 2400 AC177839.5 >161397 gtaatgttattttttatgtactccttgtctatttgtatgtattgctacgagtagcggcga 161456 AC190808.3 >2401 ............................................................ 2460 AC177839.5 >161457 ggtgacgagaaacccgaagaccaacttggtaaagttcctggaatctcaagtcacaagcag 161516 AC190808.3 >2461 ............................................................ 2520 AC177839.5 >161517 gttgtacccttgatcactcttctttacccaataatcttcttgttaatcaatgtgacatgc 161576 AC190808.3 >2521 ............................................................ 2580 AC177839.5 >161577 ttaggttaatttgatgagacctaatatgttaccctagttttgtttaccccacaccttata 161636 AC190808.3 >2581 ............................................................ 2640 AC177839.5 >161637 aacaaatgaactattgggtagacttgctattgctctacctagttttaggattaatgttat 161696 AC190808.3 >2641 ............................................................ 2700 AC177839.5 >161697 actgaactatgatcatgttccaccattattgttggtttaattattgttcatgataagact 161756 AC190808.3 >2701 ............................................................ 2760 AC177839.5 >161757 attgtgttaattggaacatggagcttaacttgacataaccgtgctaccacaatggtggaa 161816 AC190808.3 >2761 ............................................................ 2820 AC177839.5 >161817 tgagacgcccttggctgactaattagaaaagctagtggagtactaccttaccaggaatgg 161876 AC190808.3 >2821 ............................................................ 2880 AC177839.5 >161877 ccaagggaaatagaggagttgccagtgtagggaggttctcgggtcgatcttgctgcgatg 161936 AC190808.3 >2881 ............................................................ 2940 AC177839.5 >161937 gcttttcgaacgagggattcctatatcgctcttctcacgaaatcgtagcgggttttctga 161996 AC190808.3 >2941 ............................................................ 3000 AC177839.5 >161997 agctagtggaactttgtgaaggccttgtagtggatccctagccattcacctcggaagtgt 162056 AC190808.3 >3001 ............................................................ 3060 AC177839.5 >162057 ctgagggccttgcaaaccttagctaaacgggatacatgacttctgggtaaagggtgcaac 162116 AC190808.3 >3061 ............................................................ 3120 AC177839.5 >162117 ctctgcagagtgtaaaactggtatatcagccgtgctcacggtgaagagcgactcagaact 162176 AC190808.3 >3121 ............................................................ 3180 AC177839.5 >162177 ctcacatgatcaatttatggaattaaatttaatctgtcatttgcattgcattgtgggatt 162236 AC190808.3 >3181 ............................................................ 3240 AC177839.5 >162237 tattattaattgtgatctcttattttattgggatgatatctacttatatttagtaacttc 162296 AC190808.3 >3241 ............................................................ 3300 AC177839.5 >162297 taataaaactttgactaactttaaaaggcgaggttggttgccgaagggttttgctagaaa 162356 AC190808.3 >3301 ............................................................ 3360 AC177839.5 >162357 gagggtatttattatgaggaaacctttgcccctagtgctcgtttagcagtcattagaatc 162416 AC190808.3 >3361 ............................................................ 3420 AC177839.5 >162417 cttctagcttttgttgcttcgaagggttttaaaccttttcaaatggatgtcaaaagtact 162476 AC190808.3 >3421 ............................................................ 3480 AC177839.5 >162477 ttctaaaacgattatttagaggaatatgtctatgtgaggcatccctggttttggagttca 162536 AC190808.3 >3481 ............................................................ 3540 AC177839.5 >162537 aagattccaaaccatgttttcaaatttcaaaaagctctatatggtttgaaacatggccct 162596 AC190808.3 >3541 ............................................................ 3600 AC177839.5 >162597 agagcctagtatgagcatagaaaacttacttgcttgcaaagggtttttaatacgggctct 162656 AC190808.3 >3601 ............................................................ 3660 AC177839.5 >162657 attgataaaactctttttctcctcaagcaaggcaatgacaccttttggttcaaatataca 162716 AC190808.3 >3661 ............................................................ 3720 AC177839.5 >162717 tggatgtaatcatatttggttgttcttctcatgctcttgtttccaagttttcggataata 162776 AC190808.3 >3721 ............................................................ 3780 AC177839.5 >162777 taagtagggagtttgagatgagcatgatgggagagcacaatttcttccttgggctgcaaa 162836 AC190808.3 >3781 ............................................................ 3840 AC177839.5 >162837 taaagcagacctaagataggaaatttgtgcaccaaggcaaatacaccaaggatgtcctaa 162896 AC190808.3 >3841 ............................................................ 3900 AC177839.5 >162897 aaaggtttgacatgggtgaggccaagcctctttcgacgcccatgtgcaccacaacgactt 162956 AC190808.3 >3901 ............................................................ 3960 AC177839.5 >162957 tggatgctgatgaggacggtgagcccatggaccagaaagagtataggagcatgattggct 163016 AC190808.3 >3961 ............................................................ 4020 AC177839.5 >163017 ccctcctgtactagatggcgatgaagccaaacatacacttcgtagtgtgcctatgcgctc 163076 AC190808.3 >4021 ............................................................ 4080 AC177839.5 >163077 agttctaggcttccccgtgtacttcccacaggtaggctatcaaacagatcatgaggtatc 163136 AC190808.3 >4081 ............................................................ 4140 AC177839.5 >163137 tttgtttcacacctgagtttgtcttatgctattcctcttcatccattatgtctttgtgtg 163196 AC190808.3 >4141 ............................................................ 4200 AC177839.5 >163197 gttatccagatgctgattgtgtgggatgccgcttagatcgcaagtccacttctaggactt 163256 AC190808.3 >4201 ............................................................ 4260 AC177839.5 >163257 gtcagtttttgggttcctccctggtttcttggtcttctcgcaagcagtctagtgttgccc 163316 AC190808.3 >4261 ............................................................ 4320 AC177839.5 >163317 agtctaccacataggctgagtatgttgctactactagctgttgctcgtatttgctttgga 163376 AC190808.3 >4321 ............................................................ 4380 AC177839.5 >163377 tgatgaccactttgtgggattttggcttttttgcatgtgcctctgctttatgatagcatg 163436 AC190808.3 >4381 ............................................................ 4440 AC177839.5 >163437 agtgccatcaatgttaccaaaaatttgtactgcattctaaaccaagcacatcaatgttcg 163496 AC190808.3 >4441 ............................................................ 4500 AC177839.5 >163497 ctttcattttcttagagatcattatgagaatgaggacattgatcctcatcatgttgatac 163556 AC190808.3 >4501 ............................................................ 4560 AC177839.5 >163557 ccaaagacaacatgcagataccctcataaaacaccttgttcaatccacttgctcatttgc 163616 AC190808.3 >4561 ............................................................ 4620 AC177839.5 >163617 gaggggagttaggcgtgtgttttcccttttagctgaggaatttctttctgtcgtttctct 163676 AC190808.3 >4621 ............................................................ 4680 AC177839.5 >163677 aaattttctgtcattttcatttttctttgcaattttgtaacataactgcattgcatatca 163736 AC190808.3 >4681 ............................................................ 4740 AC177839.5 >163737 ttttgtacaattttgagcttcatttatatatctgttagaatgtaagtatgctctttatag 163796 AC190808.3 >4741 ............................................................ 4800 AC177839.5 >163797 tatgttctttgtgtacataatgatgttatggcaaacttaggctctttttgatcatattga 163856 AC190808.3 >4801 ............................................................ 4860 AC177839.5 >163857 taaaatgttgttgagctaagcttattttcataattgtgaacatgattattagttgcaata 163916 AC190808.3 >4861 ............................................................ 4920 AC177839.5 >163917 tccaaaaattgtcaccattgagattggcacctagcatgtgtatgatgtgttgagatcctt 163976 AC190808.3 >4921 ............................................................ 4980 AC177839.5 >163977 tctgttgttactaatatgctaggtggctatgtatcatgccttgtgtcattcactatcttg 164036 AC190808.3 >4981 ............................................................ 5040 AC177839.5 >164037 atattttaattctatgctaaaatataaaccaagataagcgaaaattagaaagatcaagat 164096 AC190808.3 >5041 ............................................................ 5100 AC177839.5 >164097 gggttggcatttttcatcgcatcactttatcgagactacttatattttcacttttggaag 164156 AC190808.3 >5101 ............................................................ 5160 AC177839.5 >164157 aacttgagtagtgtagtggatgatcaaaatcagtgtctttagcttctgattgcattcttg 164216 AC190808.3 >5161 ............................................................ 5220 AC177839.5 >164217 cataggctacactcggttaaaaagttagacaatgcgatggttaaagctctcagactcaca 164276 AC190808.3 >5221 ............................................................ 5280 AC177839.5 >164277 tgcttttgagtaaaatttgtgatccgctgcaaactctgatttcccccccaattttaggtt 164336 AC190808.3 >5281 ............................................................ 5340 AC177839.5 >164337 aaaaaaactattttggcatgatgagaaaccgttgtttggggtagttcaccctttatgctt 164396 AC190808.3 >5341 ............................................................ 5400 AC177839.5 >164397 ttgactagcacttggttgattccatgcttacattatgcatagtgttgttttagtggtgaa 164456 AC190808.3 >5401 ............................................................ 5460 AC177839.5 >164457 cttctcttttgagatgcttaaaaatgaatcaaatgcttattcttcacatatcttatgcat 164516 AC190808.3 >5461 ............................................................ 5520 AC177839.5 >164517 ataataagtttgaccatctgttagcacatgcacttattgatgcacacattgcacaacacc 164576 AC190808.3 >5521 ............................................................ 5580 AC177839.5 >164577 acttagagccttttttacactctgtttgctatgctccttaagttcctacacattctacat 164636 AC190808.3 >5581 ............................................................ 5640 AC177839.5 >164637 tttttgcattcttcttttgatccttgcattctcttagggggagttgttttctttctcctt 164696 AC190808.3 >5641 ............................................................ 5700 AC177839.5 >164697 ttacgatgtttcgacgcttgctgagtgcacttgtcaaaaagggggagaagttttgggaga 164756 AC190808.3 >5701 ............................................................ 5760 AC177839.5 >164757 atttgttgctttttggtctttcgagggagagttcctcaagggggagcaatttgtagattt 164816 AC190808.3 >5761 ............................................................ 5820 AC177839.5 >164817 tggggacttccttgcatatatatctttttgttgaagatgtctggctttctgtgaggtctt 164876 AC190808.3 >5821 ............................................................ 5880 AC177839.5 >164877 gagatgtgcttcaaggggagttttttaccttctaagagcttttgctagttgtgttgggcc 164936 AC190808.3 >5881 ............................................................ 5940 AC177839.5 >164937 tttgccttttctggaggaactatctttgatttcaacatttctgttgttttatgctttgag 164996 AC190808.3 >5941 ............................................................ 6000 AC177839.5 >164997 ttggctttcactgctagctagtgttgctgagcctctttttgtctcttcttgaggactatc 165056 AC190808.3 >6001 ............................................................ 6060 AC177839.5 >165057 cattttctcgcttggacgtgttgagtcgttgtccatttcttttggtaccaagctttgctc 165116 AC190808.3 >6061 ............................................................ 6120 AC177839.5 >165117 actctggatgaccttttgatttttgtctggcttttggtcatttgagtcagcttctcttct 165176 AC190808.3 >6121 ............................................................ 6180 AC177839.5 >165177 tcttcattctttctactgattcgtgttcatatggtggtgtcgacaatgcaatcatcaagg 165236 AC190808.3 >6181 ............................................................ 6240 AC177839.5 >165237 ggtagattgcaaacacaaggttgatttgtcccttttggttcgggttgtcatgagtaattg 165296 AC190808.3 >6241 ............................................................ 6300 AC177839.5 >165297 tcaatgggtagcgtcttaggttgagtcgtgtggactaactagggcgtgagtatatgtatt 165356 AC190808.3 >6301 ............................................................ 6360 AC177839.5 >165357 ttgcaaccatgtctcttgacttgcggtatgcaagtgtgtagtacaaggatggtgggtgat 165416 AC190808.3 >6361 ............................................................ 6420 AC177839.5 >165417 ggtgaaggtgaagatcatgcgggtttgtgccaatgggccacgagcggtgaaggatgagcg 165476 AC190808.3 >6421 ............................................................ 6480 AC177839.5 >165477 ctgagccttgattgagggactagagaagccgagtgactagccacattatctgacacttgg 165536 AC190808.3 >6481 ............................................................ 6540 AC177839.5 >165537 gacacgcaccagtgcgaggacatggcagagcggatcgtgacaccggcacggtcgaggact 165596 AC190808.3 >6541 ............................................................ 6600 AC177839.5 >165597 ggcggcacacatgtccaggacgtgggggacgcgcatgcggtgcgctactcgtggaagttt 165656 AC190808.3 >6601 ............................................................ 6660 AC177839.5 >165657 tggtagttgagcctcaaaaccactcagtgctttagtgtcacacccggttttagaaggcaa 165716 AC190808.3 >6661 ............................................................ 6720 AC177839.5 >165717 accgaatgcgaaccatgtacgtgccaggatcagttattcacgtacacagcagctacataa 165776 AC190808.3 >6721 ............................................................ 6780 AC177839.5 >165777 tatggacatcatcacacagtgctcaaaatagtattaataagggaaatagtcgattacatc 165836 AC190808.3 >6781 ............................................................ 6840 AC177839.5 >165837 atacgtctgggacgtccatatagttcttacaataaatcaaagtgcggaaaagaaacgtag 165896 AC190808.3 >6841 ............................................................ 6900 AC177839.5 >165897 ataacgcggccttcacaggcagccgactgggggttgccgctaacccacacctagaactcg 165956 AC190808.3 >6901 ............................................................ 6960 AC177839.5 >165957 tcgtaatcttggaactcctggaagtctccttccacagcttcatcttcgcctgagcagtgg 166016 AC190808.3 >6961 ............................................................ 7020 AC177839.5 >166017 ttgcaatgctgacaacctgggggggtttggtgtgtagagcaagggtgagtacacatcaac 166076 AC190808.3 >7021 ............................................................ 7080 AC177839.5 >166077 atactcagcaagtatcctgtttggctgtagtggactagctttatgtggggataagtcaag 166136 AC190808.3 >7081 ............................................................ 7140 AC177839.5 >166137 cagttgcttttagttggtcagattattatttactattagaaagccaagttttagcattaa 166196 AC190808.3 >7141 ............................................................ 7200 AC177839.5 >166197 cccaagttattaacccgatgtaccctttccaaacggaaagaataccacttaccagcacca 166256 AC190808.3 >7201 ............................................................ 7260 AC177839.5 >166257 tagtcataaccaaaaccatcaatctcataaccacctgtaccacaatgtctctgatcaagt 166316 AC190808.3 >7261 ............................................................ 7320 AC177839.5 >166317 accactaatcactggagctcccttggccgctcataaccgcgagcacggctgatatatcag 166376 AC190808.3 >7321 ............................................................ 7380 AC177839.5 >166377 tttcataacactctgcagaggttgtgcactttacccacaagccgtgattccctcttgcct 166436 AC190808.3 >7381 ............................................................ 7440 AC177839.5 >166437 cgggccgatcaaacccttaaacactaccaaggtgaataggcagggtttcactacgtagcc 166496 AC190808.3 >7441 ............................................................ 7500 AC177839.5 >166497 tttacaaagattccccggggctgtagccacccgttaggtttcctaaatgcaccgcactcc 166556 AC190808.3 >7501 ............................................................ 7560 AC177839.5 >166557 tccccaaggggcgaacccaagcttggcagagcgagccgcatacaccgagccccattgacg 166616 AC190808.3 >7561 ............................................................ 7620 AC177839.5 >166617 gcacgacggctaagtgaactacaccccggatcctctaattattcagctaagggcacccca 166676 AC190808.3 >7621 ............................................................ 7680 AC177839.5 >166677 ttccacccttatggttgcactgttttcccgggcggtcatccatagaacaggtccttacgg 166736 AC190808.3 >7681 ............................................................ 7740 AC177839.5 >166737 agaggcactcgagaaaccgctcgagcccccttgaataccacaagtacaacatcataataa 166796 AC190808.3 >7741 ............................................................ 7800 AC177839.5 >166797 gagaagggaaaacagcgtatcatagataatctcatcatgttcattgattagagttgagca 166856 AC190808.3 >7801 ............................................................ 7860 AC177839.5 >166857 atagcataaagctaaacagtaataatccaacccaaataggtaaacaaggacatggataac 166916 AC190808.3 >7861 ............................................................ 7920 AC177839.5 >166917 aaaagctagtcaatccttaggtataaaggtgtaatgcgggaggtgaattaaataatgaat 166976 AC190808.3 >7921 ............................................................ 7980 AC177839.5 >166977 aggacagagataggtcaaaggacacttgcctccaccaaacgactgctgctcaggggcttc 167036 AC190808.3 >7981 ............................................................ 8040 AC177839.5 >167037 tcctgcgggttcctcgggctcttcgaccgaatcgttctctatgcgattgcaaacatacat 167096 AC190808.3 >8041 ............................................................ 8100 AC177839.5 >167097 acatccacatatttaatacaaaagaacagtacaccatacaaggaaacaaataaagcg-aa 167155 AC190808.3 >8101 .........................................................c.. 8160 AC177839.5 >167156 tatgcatcaagtatgacattcgatatcgcatttgttatggttagaaagaaacgggaaagg 167215 AC190808.3 >8161 ....................................................-....... 8219 AC177839.5 >167216 gtctcgcagggggttaaatcttatgcgctaacgatcaattacaattggttcttaacaaaa 167275 AC190808.3 >8220 ............-.......-..............................-........ 8276 AC177839.5 >167276 gaattctgttatatgcactagtgggaacctaatcgttttaagttgatcaacatcgcacga 167335 AC190808.3 >8277 ............................................................ 8336 AC177839.5 >167336 gataaacaattaactacatgaatcaattagcataacggaattttaaattaaacttcctat 167395 AC190808.3 >8337 ............................................................ 8396 AC177839.5 >167396 ttcaatggcatatgaacaacgattagcctacttaaaataaaatagctatgatcacagaaa 167455 AC190808.3 >8397 ............................................................ 8456 AC177839.5 >167456 gtaaataaaataaaataaaacgaaataataaaaaaaagggggggcggttgaaccggccct 167515 AC190808.3 >8457 ............................................................ 8516 AC177839.5 >167516 aggggcggttgaaccggccggctgggcggcgagctgggcggcggggcggctgagccggcc 167575 AC190808.3 >8517 ............................................................ 8576 AC177839.5 >167576 cggttgaaccggcggccaggcgagcgcgcgggggggggggtcgggctggccaggcggccg 167635 AC190808.3 >8577 ............................................................ 8636 AC177839.5 >167636 agccggccaaacggccaggcgagcgcg 167662 AC190808.3 >8637 ........................... 8663
Events
| Id | Type | Date | Whodid | Comment |
| 295014 | InitHasAlign | 01/15/2014 17:13:59 | cgi_chen | find_overlapId: find_overlap_app.cpp 404199 2013-06-20 22:08:27Z rafanovi $ built Aug 1 2013. Toolkit wrapper using /home/boukn/code/toolkit/c++/GCC442-ReleaseMT64/lib Info: Blast Including ID: 545481409 Info: Running Blast Filter: 0 Info: Determined ID: gi|545481409 needs Merging. Info: Blast Including ID: 545481409 Info: Running Blast Filter: 0 Info: Determined ID: gi|545481409 needs Merging. Info: Blast Including ID: 545481409 Info: Running Blast Filter: 0 Info: Determined ID: gi|545481409 needs Merging. Info: Best Rank: 13 in for 545481409 of 1 Info: NG returned 1 alignments tpf_solo for TPF_updated_1_v2 |
BAC Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| CH201-122J17 | AC190808.3 | 100% | pos 26917 (R-) | |||
| AC177839.5 | 100% | pos 182066 (R+) | ||||
| CH201-132B13 | AC177839.5 | 99.52% | pos 19394 (F-) | |||
| CH201-139K13 | AC190808.3 | 100% | pos 123503 (F-) | |||
| AC190808.3 | 100% | pos 128577 (F+) | ||||
| CH201-146D8 | AC177839.5 | 100% | pos 116218 (R+) | |||
| CH201-149E7 | AC177839.5 | 100% | pos 19396 (R-) | |||
| CH201-169H1 | AC177839.5 | 100% | pos 182180 (F+) | |||
| AC190808.3 | 100% | pos 27327 (F-) | ||||
| CH201-170O16 | AC177839.5 | 100% | pos 19796 (R+) | AC190808.3 | 100% | pos 41509 (F-) |
| AC177839.5 | 100% | pos 168000 (F+) | ||||
| CH201-173N2 | AC190808.3 | 100% | pos 42619 (F-) | |||
| AC190808.3 | 99.09% | pos 42189 (F-) | ||||
| CH201-198B3 | AC190808.3 | 100% | pos 64794 (R-) | AC177839.5 | 99.78% | pos 50532 (F+) |
| CH201-1M5 | AC190808.3 | 100% | pos 52487 (R-) | |||
| AC190808.3 | 100% | pos 52435 (R-) | ||||
| CH201-217G14 | AC190808.3 | 100% | pos 102848 (F-) | |||
| CH201-242E12 | AC190808.3 | 99.57% | pos 25690 (R-) | |||
| AC177839.5 | 99.57% | pos 183262 (R+) | ||||
| CH201-243C14 | AC190808.3 | 100% | pos 62863 (R+) | |||
| CH201-274H15 | AC177839.5 | 98.99% | pos 23325 (F-) | |||
| AC177839.5 | 98.99% | pos 16307 (F-) | ||||
| CH201-294G7 | AC190808.3 | 100% | pos 38675 (R+) | |||
| AC190808.3 | 100% | pos 38616 (R+) | ||||
| AC177839.5 | 100% | pos 170717 (R-) | ||||
| AC177839.5 | 100% | pos 170768 (R-) | ||||
| CH201-316K9 | AC177839.5 | 98.42% | pos 108109 (F+) | |||
| AC177839.5 | 97.26% | pos 108148 (F+) | ||||
| CH201-320L4 | AC177839.5 | 99.29% | pos 136973 (R+) | |||
| AC177839.5 | 99.77% | pos 137307 (R+) | ||||
| CH201-345D6 | AC190808.3 | 100% | pos 52081 (R+) | |||
| AC190808.3 | 100% | pos 52244 (R+) | ||||
| CH201-347F7 | AC177839.5 | 100% | pos 108811 (F-) | |||
| CH201-348J14 | AC177839.5 | 100% | pos 129013 (R-) | |||
| AC177839.5 | 100% | pos 135084 (R-) | ||||
| CH201-445A6 | AC177839.5 | 99.87% | pos 110046 (R-) | |||
| AC177839.5 | 100% | pos 110476 (R-) | ||||
| CH201-463J1 | AC190808.3 | 98.96% | pos 56101 (F+) | |||
| CH201-517E2 | AC177839.5 | 100% | pos 28546 (R+) | AC190808.3 | 100% | pos 53900 (F-) |
| AC190808.3 | 99.26% | pos 54309 (F-) | ||||
| CH201-528M14 | AC177839.5 | 100% | pos 128484 (R-) | |||
| CH201-546A9 | AC190808.3 | 100% | pos 2823 (F-) | |||
| AC177839.5 | 100% | pos 161819 (F-) | ||||
| CH201-56L20 | AC190808.3 | 99.49% | pos 41386 (F-) | |||
| AC177839.5 | 99.49% | pos 167862 (F+) | ||||
| AC190808.3 | 99.74% | pos 41026 (F-) | ||||
| AC177839.5 | 99.74% | pos 168228 (F+) | ||||
| ZMMBBb-141J8 | AC177839.5 | 99.48% | pos 88540 (R+) | |||
| ZMMBBb-170M20 | AC177839.5 | 98.65% | pos 113683 (F+) | |||
| ZMMBBb-235D8 | AC177839.5 | 99.29% | pos 39851 (F-) | |||
| AC177839.5 | 97.68% | pos 40039 (F-) | ||||
| AC177839.5 | 99.74% | pos 39775 (F-) | ||||
| ZMMBBb-236F1 | AC177839.5 | 98.64% | pos 75304 (R-) | |||
| ZMMBBb-262B24 | AC177839.5 | 98.96% | pos 113711 (F+) | |||
| ZMMBBb-285M6 | AC190808.3 | 99.62% | pos 142327 (R+) | |||
| ZMMBBb-293D12 | AC177839.5 | 97.04% | pos 103471 (R-) | |||
| ZMMBBb-324G20 | AC177839.5 | 98.94% | pos 114116 (F-) | |||
| ZMMBBb-359D16 | AC177839.5 | 98.87% | pos 112884 (R+) | |||
| ZMMBBb-429F3 | AC177839.5 | 97.93% | pos 75440 (F-) | |||
| ZMMBBb-502J8 | AC177839.5 | 99.84% | pos 159004 (R+) | |||
| AC190808.3 | 99.84% | pos 8 (R+) | ||||
| ZMMBBb-576H7 | AC190808.3 | 97.8% | pos 113577 (R-) | |||
| ZMMBBb-93I17 | AC177839.5 | 98.42% | pos 111758 (F-) | |||
Fosmid Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| Z_AI-1021D7 | AC177839.5 | 100% | pos 136904 (R+) | |||
| Z_AI-1021H16 | AC177839.5 | 99.71% | pos 131588 (R-) | |||
| Z_AI-1047H23 | AC177839.5 | 100% | pos 17585 (R-) | |||
| Z_AI-1099A12 | AC190808.3 | 98.82% | pos 136223 (F-) | |||
| Z_AI-1101A15 | AC190808.3 | 100% | pos 96056 (R-) | |||
| Z_AI-1165M11 | AC177839.5 | 99.28% | pos 129010 (R-) | |||
| AC177839.5 | 99.28% | pos 135081 (R-) | ||||
| Z_AI-1186J2 | AC190808.3 | 100% | pos 22207 (F+) | |||
| AC177839.5 | 100% | pos 187364 (F-) | ||||
| Z_AI-1256J7 | AC190808.3 | 99.43% | pos 37824 (R-) | |||
| AC177839.5 | 99.43% | pos 171110 (R+) | ||||
| Z_AI-1280E13 | AC177839.5 | 99.05% | pos 44547 (R+) | |||
| Z_AI-1291P18 | AC177839.5 | 100% | pos 17629 (F-) | |||
| Z_AI-1296D12 | AC177839.5 | 100% | pos 133735 (R+) | |||
| Z_AI-1329I4 | AC190808.3 | 100% | pos 110894 (R-) | AC190808.3 | 99.56% | pos 76052 (F+) |
| Z_AI-1402E15 | AC190808.3 | 99.44% | pos 107674 (R+) | |||
| Z_AI-1407J19 | AC177839.5 | 99.73% | pos 77866 (F-) | |||
| Z_AI-1441A13 | AC190808.3 | 99.86% | pos 31946 (R-) | |||
| AC177839.5 | 99.86% | pos 176979 (R+) | ||||
| Z_AI-1485C8 | AC190808.3 | 99.72% | pos 21332 (F-) | |||
| AC177839.5 | 99.72% | pos 187957 (F+) | ||||
| Z_AI-259F20 | AC177839.5 | 100% | pos 103451 (F-) | |||
| Z_AI-304O14 | AC177839.5 | 100% | pos 39591 (F-) | |||
| Z_AI-309D19 | AC190808.3 | 100% | pos 114974 (F+) | |||
| Z_AI-330M6 | AC177839.5 | 100% | pos 190877 (R-) | AC190808.3 | 100% | pos 51359 (F-) |
| AC190808.3 | 100% | pos 18521 (R+) | ||||
| Z_AI-339H9 | AC190808.3 | 99.37% | pos 29471 (F+) | |||
| AC177839.5 | 99.37% | pos 179853 (F-) | ||||
| AC177839.5 | 99.87% | pos 179817 (F-) | ||||
| AC190808.3 | 99.87% | pos 29051 (F+) | ||||
| Z_AI-362E15 | AC177839.5 | 100% | pos 178055 (R-) | AC190808.3 | 100% | pos 66874 (F-) |
| AC190808.3 | 100% | pos 31458 (R+) | ||||
| Z_AI-474L12 | AC177839.5 | 100% | pos 115977 (R-) | |||
| Z_AI-491P3 | AC177839.5 | 100% | pos 137419 (R-) | AC177839.5 | 100% | pos 102490 (F+) |
| Z_AI-501A17 | AC190808.3 | 100% | pos 55793 (F-) | |||
| Z_AI-568O22 | AC177839.5 | 99.56% | pos 3569 (F-) | |||
| Z_AI-591D2 | AC190808.3 | 100% | pos 50161 (F-) | |||
| Z_AI-59L21 | AC177839.5 | 100% | pos 51159 (F+) | |||
| Z_AI-630J6 | AC177839.5 | 100% | pos 43490 (F+) | |||
| Z_AI-651A5 | AC177839.5 | 100% | pos 38246 (R+) | AC177839.5 | 100% | pos 66718 (F-) |
| Z_AI-652P17 | AC190808.3 | 100% | pos 44655 (R+) | |||
| Z_AI-654C20 | AC190808.3 | 99.26% | pos 115047 (R-) | |||
| Z_AI-764N17 | AC190808.3 | 100% | pos 42602 (R-) | |||
| Z_AI-784N10 | AC177839.5 | 99.35% | pos 3283 (F-) | |||
| Z_AI-794A18 | AC177839.5 | 100% | pos 74233 (R+) | AC177839.5 | 100% | pos 108963 (F-) |
| Z_AI-816O17 | AC177839.5 | 100% | pos 114175 (F+) | |||
| Z_AI-860L15 | AC177839.5 | 100% | pos 38496 (R-) | |||
Repeats
| acc | start | stop | repeat id | strand | name | family | class |
|---|