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Study Description
This study includes whole genome sequencing from 44 pediatric patients at Memorial Sloan Kettering derived from formalin-fixed paraffin-embedded (FFPE) tissue. This dataset was used to train and validate a classification strategy called FFPErase for detecting artifact mutations from FFPE damage.
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Diseases/Traits Related to Study (MeSH terms)
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Study Attribution
  • First Author Investigator
    • Dylan Domenico. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
  • Co-Investigators
    • Gunes Gundem. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Max F. Levine. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Juan Esteban Arango Ossa. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Pauline Robbe. RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
    • Georgios Asimomitis. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Cassidy Cobbs. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Emily Stockfisch. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Tara O'Donohue. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Charlotte Brierley. Oxford University, Oxford, UK.
    • Janine Senz. BC Cancer, Vancouver, CA.
    • Dawn Cochrane. BC Cancer, Vancouver, CA.
    • Neeman Mohibullah. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Umesh Bhanot. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Joachim Silber. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Neerav Shukla. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Sohrab P. Shah. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Britta Weigelt. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Oliver Zivanovic. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Andrew Mcpherson. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
    • Anna Schuh. Oxford University, Oxford, UK.
    • Andrew L. Kung. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
  • Principal Investigator
    • Elli Papaemmanuil. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
  • Funding Source
    • Olayan Fund for Precision Pediatric Cancer Medicine. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
  • Sequencing Center
    • Integrated Genomics Operation. Memorial Sloan Kettering Cancer Center, New York, NY, USA.
  • Project Coordinator
    • Pediatrics Translational Medicine Program at MSK Kids. Memorial Sloan Kettering Cancer Center, New York, NY, USA.