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View SNP Submission Batch
Submitter Handle:EGP_SNPS
Submitter Batch ID:MSH3-PDR90-041703
Submitter Method ID:METHOD-E
Citation:NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
Population:PDR90
Comment:THESE SNPS WERE GENERATED AS PART OF THE NIEHS SUPPORTED GRANT (HL66682) FOR THE ENVIRONMENTAL GENOME PROJECT TO DEVELOP SNP RESOURCES DISTRIBUTED TO THE RESEARCH COMMUNITY. PLEASE SEE EGP.GS.WASHINGTON.EDU FOR DETAILS ON HOW TO CITE THIS WORK. THE FIRST DESCRIPTOR IN THE "SUBMITTER SNP ID:" FIELD INDICATES THE HUGO ASSIGNED NAME OF THE GENE STUDIED. THE SECOND NUMBER DENOTES THE VARIANT BASE POSITION IN THE LISTED GENBANK ACCESSION NUMBER.
Batch Total SubSNP(ss) Count:492


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SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss8485237 MSH3-000175 A/C 176 rs6151593 0 5 80653984 NT_034772.7 30544177
ss8485238 MSH3-000338 A/G 176 rs6151594 0 5 80654147 NT_034772.7 30544340
ss8485239 MSH3-000775 C/T 88 rs10168 1 5 80654584 NT_034772.7 30544777
ss8485240 MSH3-000869 C/T 100 rs2250063 0 5 80654678 NT_034772.7 30544871
ss8485241 MSH3-000880 C/T 96 rs1105525 1 5 80654689 NT_034772.7 30544882
ss8485242 MSH3-000884 A/G 100 rs1105524 1 5 80654693 NT_034772.7 30544886
ss8485243 MSH3-000939 A/G 144 rs6151597 0 5 80654748 NT_034772.7 30544941
ss8485244 MSH3-001162 A/G 178 rs1650697 1 5 80654962 NT_034772.7 30545155
ss8485245 MSH3-001240 G/T 178 rs1677658 0 5 80655040 NT_034772.7 30545233
ss8485246 MSH3-001411 A/G 176 rs6151598 0 5 80655211 NT_034772.7 30545404
ss8485247 MSH3-001413 A/G 176 rs6151599 0 5 80655213 NT_034772.7 30545406
ss8485248 MSH3-001514 C/T 180 rs408626 1 5 80655314 NT_034772.7 30545507
ss8485249 MSH3-001661 A/T 180 rs1650696 1 5 80655461 NT_034772.7 30545654
ss8485250 MSH3-001763 A/G 180 rs1650695 1 5 80655563 NT_034772.7 30545756
ss8485251 MSH3-001872 C/T 166 rs1643641 1 5 80655672 NT_034772.7 30545865
ss8485252 MSH3-001877 G/T 162 rs442767 1 5 80655677 NT_034772.7 30545870
ss8485253 MSH3-002089 C/T 172 rs6151600 0 5 80655889 NT_034772.7 30546082
ss8485254 MSH3-002190 A/G 172 rs453544 1 5 80655990 NT_034772.7 30546183
ss8485255 MSH3-002415 A/G 172 rs380691 1 5 80656215 NT_034772.7 30546408
ss8485256 MSH3-002535 A/G 170 rs1382539 0 5 80656335 NT_034772.7 30546528
ss8485257 MSH3-002546 C/G 168 rs1382540 0 5 80656346 NT_034772.7 30546539
ss8485258 MSH3-002771 C/T 174 rs1643639 1 5 80656571 NT_034772.7 30546764
ss8485259 MSH3-002807 A/C/G 174 rs1650694 1 5 80656607 NT_034772.7 30546800
ss8485260 MSH3-002922 C/G 166 rs1677667 0 5 80656722 NT_034772.7 30546915
ss8485261 MSH3-003208 C/T 150 rs1650693 1 5 80657008 NT_034772.7 30547201
ss8485262 MSH3-003589 A/G 160 rs6151602 0 5 80657373 NT_034772.7 30547566
ss8485263 MSH3-010534 G/T 98 rs6151603 0 5 80664309 NT_034772.7 30554502
ss8485264 MSH3-010581 A/G 102 rs6151604 0 5 80664356 NT_034772.7 30554549
ss8485265 MSH3-010674 C/T 86 rs1650671 1 5 80664449 NT_034772.7 30554642
ss8485266 MSH3-010708 -/A 144 rs6151605 0 5 80664483 NT_034772.7 30554676
30 of 492 subsnp's starting at ss8485237. ss# starting at ss

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