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View SNP Submission Batch
Submitter Handle:EGP_SNPS
Submitter Batch ID:PMS1-PDR90-040403
Submitter Method ID:METHOD-E
Citation:NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
Population:PDR90
Comment:THESE SNPS WERE GENERATED AS PART OF THE NIEHS SUPPORTED GRANT (HL66682) FOR THE ENVIRONMENTAL GENOME PROJECT TO DEVELOP SNP RESOURCES DISTRIBUTED TO THE RESEARCH COMMUNITY. PLEASE SEE EGP.GS.WASHINGTON.EDU FOR DETAILS ON HOW TO CITE THIS WORK. THE FIRST DESCRIPTOR IN THE "SUBMITTER SNP ID:" FIELD INDICATES THE HUGO ASSIGNED NAME OF THE GENE STUDIED. THE SECOND NUMBER DENOTES THE VARIANT BASE POSITION IN THE LISTED GENBANK ACCESSION NUMBER.
Batch Total SubSNP(ss) Count:368


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SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss7986652 PMS1-000374 A/G 176 rs5742917 0 2 189783000 NT_005403.18 95286985
ss7986653 PMS1-000492 C/T 176 rs5742918 0 2 189783118 NT_005403.18 95287103
ss7986654 PMS1-000561 G/T 176 rs5742919 0 2 189783187 NT_005403.18 95287172
ss7986655 PMS1-000567 A/G 176 rs2352709 0 2 189783193 NT_005403.18 95287178
ss7986656 PMS1-000642 -/A 174 rs5742920 0 2 189783268 NT_005403.18 95287253
ss7986657 PMS1-000649 C/G 174 rs5742921 0 2 189783275 NT_005403.18 95287260
ss7986658 PMS1-000785 C/T 172 rs5742922 0 2 189783411 NT_005403.18 95287396
ss7986659 PMS1-001151 A/G 160 rs5742923 0 2 189783777 NT_005403.18 95287762
ss7986660 PMS1-001352 C/G 156 rs5742924 0 2 189783978 NT_005403.18 95287963
ss7986661 PMS1-001363 A/C 156 rs5742925 0 2 189783989 NT_005403.18 95287974
ss7986662 PMS1-001453 G/T 164 rs5742926 0 2 189784079 NT_005403.18 95288064
ss7986663 PMS1-001507 A/G 156 rs5742927 0 2 189784133 NT_005403.18 95288118
ss7986664 PMS1-001645 A/G 140 rs5742928 0 2 189784271 NT_005403.18 95288256
ss7986665 PMS1-001686 C/T 138 rs5742929 0 2 189784312 NT_005403.18 95288297
ss7986666 PMS1-001708 A/C 136 rs5742930 0 2 189784334 NT_005403.18 95288319
ss7986667 PMS1-001713 C/T 136 rs5742931 0 2 189784339 NT_005403.18 95288324
ss7986668 PMS1-001888 G/T 126 rs5742932 0 2 189784514 NT_005403.18 95288499
ss7986669 PMS1-001964 C/G 132 rs5742933 0 2 189784590 NT_005403.18 95288575
ss7986670 PMS1-002041 A/G 134 rs5742934 0 2 189784667 NT_005403.18 95288652
ss7986671 PMS1-002135 C/T 138 rs1899026 1 2 189784761 NT_005403.18 95288746
ss7986672 PMS1-002147 C/T 138 rs5742935 0 2 189784773 NT_005403.18 95288758
ss7986673 PMS1-002230 C/T 130 rs1899025 1 2 189784856 NT_005403.18 95288841
ss7986674 PMS1-002273 A/G 134 rs5742936 0 2 189784899 NT_005403.18 95288884
ss7986675 PMS1-002360 G/T 170 rs1899024 1 2 189784986 NT_005403.18 95288971
ss7986676 PMS1-002537 A/G 172 rs5742937 0 2 189785163 NT_005403.18 95289148
ss7986677 PMS1-002606 A/G 174 rs5742938 0 2 189785232 NT_005403.18 95289217
ss7986678 PMS1-002788 C/T 174 rs5742939 0 2 189785414 NT_005403.18 95289399
ss7986679 PMS1-003078 A/G 170 rs5742940 0 2 189785704 NT_005403.18 95289689
ss7986680 PMS1-003109 -/TCTT 164 rs5742941 0 2 189785734 NT_005403.18 95289719
ss7986681 PMS1-003231 A/G 150 rs5742942 0 2 189785853 NT_005403.18 95289838
30 of 368 subsnp's starting at ss7986652. ss# starting at ss

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