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View SNP Submission Batch
Submitter Handle:BIOGECO
Submitter Batch ID:SNP_oak_in_vitro_resequencing_700_candidate
Submitter Method ID:SNP SURVEY BASED ON SEQUENCES
Citation:not supplied
Comment:These SNPs have been identified using Sequal in 700 candidate genes that were identified through a resequencing project on Sanger fragments conducted on 23 oak trees (11 Q. robur, 11Q. Petraea and 1 Q. ilex). 254 SNPs were found in Q. petraea, 7190 in Q. petraea/Q. robur and 132 in Q. robur . The sample size varied depending on the fragments studied (from 4 to 12). Each SNP is associated with its samplesize which belongs to [2 ?? 46].
Batch Total SubSNP(ss) Count:7576


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SubSNP(ss) Submitter
SNP_ID
SNP
Allele
Samplesize RefSNP(rs) ss2rs
Orien
Chr ChrPos Contig
Accession
Contig
Pos
ss507811169 CL8700CT10064_03-133 C/T 44 rs268354488 0 N.D. N.D.
ss507811171 CL8700CT10064_04-269 C/T 42 rs268354489 0 N.D. N.D.
ss507811182 CL8754CT10139_03-732 A/G 38 rs268354493 0 N.D. N.D.
ss507811198 CL8806CT10208_01-216 A/G 34 rs268354499 0 N.D. N.D.
ss507811200 CL8806CT10208_01-66 C/T 36 rs268354500 0 N.D. N.D.
ss507811208 CL8820CT10230_02-168 A/C 40 rs268354503 0 N.D. N.D.
ss507811211 CL8826CT10236_03-158 A/G 42 rs268354504 0 N.D. N.D.
ss507811213 CL8826CT10236_03-255 A/G 42 rs268354505 0 N.D. N.D.
ss507811218 CL8857CT10277-482 A/G 42 rs268354507 0 N.D. N.D.
ss507811234 CL8918CT10353_01-86 C/G 34 rs268354513 0 N.D. N.D.
ss507811242 CL9049CT10513_02-113 A/T 44 rs268354516 0 N.D. N.D.
ss507811244 CL9049CT10513_02-186 A/T 44 rs268354517 0 N.D. N.D.
ss507811247 CL859CT1053_01-170 A/G 36 rs268354518 0 N.D. N.D.
ss507811249 CL859CT1053_01-559 C/T 34 rs268354519 0 N.D. N.D.
ss507811252 CL859CT1053_01-715 A/G 40 rs268354520 0 N.D. N.D.
ss507811258 CL9155CT10643-171 G/T 44 rs268354522 0 N.D. N.D.
ss507811260 CL9155CT10643-408 A/G 46 rs268354523 0 N.D. N.D.
ss507811263 CL9168CT10656_02-27 C/T 40 rs268354524 0 N.D. N.D.
ss507811271 CL9255CT10758_01-139 A/T 44 rs268354527 0 N.D. N.D.
ss507811273 CL9255CT10758_01-234 A/G 44 rs268354528 0 N.D. N.D.
ss507811276 CL9262CT10767_02-211 A/G 34 rs268354529 0 N.D. N.D.
ss507811278 CL9262CT10767_02-411 C/T 34 rs268354530 0 N.D. N.D.
ss507811281 CL9348CT10866_01-44 A/G 32 rs268354531 0 N.D. N.D.
ss507811284 CL9366CT10886_01-143 C/T 44 rs268354532 0 N.D. N.D.
ss507811286 CL9366CT10886_01-41 G/T 44 rs268354533 0 N.D. N.D.
ss507811288 CL9379CT10900_02-143 A/G 44 rs268354534 0 N.D. N.D.
ss507811291 CL9379CT10900_02-50 C/T 42 rs268354535 0 N.D. N.D.
ss507811294 CL9380CT10901_01-295 A/C 44 rs268354536 0 N.D. N.D.
ss507811298 CL9462CT10992_02-170 C/T 38 rs268354538 0 N.D. N.D.
ss507811301 CL9462CT10992_02-761 G/T 38 rs268354539 0 N.D. N.D.
30 of 7575 subsnp's starting at ss507811169. ss# starting at ss

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