Submitted SNP(ss) Details: ss93999029

Submitted SNP(ss) Details: ss93999029

Submitter
Handle	BCMHGSC_JDW
Submitter SNP ID	JWB-2549006
RefSNP(rs#)	rs7020673
Submitted Batch ID	JWB_snps_no_apoe
Submitted Date	Feb 26, 2008
Publication Cited	[1] The Complete Genome of a Single Individual by Massively Parallel DNA Sequencing
First entry to dbSNP	Feb 26 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	JWB_SNP_DISCOVERY
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 12
Genotype Submission	N.D.
Haplotype	N.D.

Comment
Ref=C\|Alt=G\|Chr=chr9\|Position=4281747\|Strand=+\|dbSNP=+\|Score=80\|Reads=3:3:8

Fasta sequence (Legend)

 TTATAGAGTG AAAGGACTGG CCATGTCACT TTAAATTTAA ATTAATGGCT ATGACATTCA
 AAATATGGGT AGTAAATATG AACAGGACAC AGAAGAAAGA AAGGAGAGAA AAGGGAGAGG
 AAGGGAGTAG GAAAAAAAGA ATGACCACAT CCGATTCAGG AATTTACTCC TCTTAGTCAA
 TCCTCATTTA AAAATCAGAA GCAGCATTGA GAGCCTTCCA CACAGTGATA ATGGCTACAG
 ATTGCTGGAG
 S
 AAATTCAGGA CCTTCAGGAA TACACCGCTC GAGGGCAATA TTAAAAGTTC AATAACCTCT
 CTTAGAATCT CCTTTGCACT CTTCAGTGCA TCTATATAAC TTTCATATCC TCCTAGTTTA
 CTAAATGTCA CTACTTTCAC TAGTAATTAT TAGAAGTGTT TCATTTACTT TGCCCCAGTC
 ATTAACTCAT CAATGAGTAC AGAAAGGTCT AGAGAGCCAT GGTCCTACCA AAAATGGCAA
 GGGAGAAGAG

Submitted Frequency for ss93999029

There is no frequency submission for ss93999029.

dbSNP summary of Genotypes for ss93999029

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	G=0.55309737	C=0.44690266	C/G=0.45132744 G/G=0.32743362 C/C=0.22123894	Pr(chiSq=0.856,df=1) =0.371	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	C=0.67441863	G=0.32558140	C/C=0.46511629 C/G=0.41860464 G/G=0.11627907	Pr(chiSq=0.094,df=1) =1.000	Genotype Freq.
HapMap-JPT	172	172	G=0.54069769	C=0.45930234	C/G=0.45348838 G/G=0.31395349 C/C=0.23255815	Pr(chiSq=0.651,df=1) =0.439	Genotype Freq.
HapMap-YRI	226	226	G=0.86283183	C=0.13716814	G/G=0.74336284 C/G=0.23893805 C/C=0.01769911	Pr(chiSq=0.010,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	G=0.85714287	C=0.14285715	G/G=0.71428573 C/G=0.28571430	Pr(chiSq=0.361,df=1) =0.584	Genotype Freq.
HAPMAP-CHB	82	82	G=0.58536583	C=0.41463414	C/G=0.39024389 G/G=0.39024389 C/C=0.21951219	Pr(chiSq=1.576,df=1) =0.251	Genotype Freq.
HAPMAP-CHD	170	170	G=0.50588238	C=0.49411765	C/G=0.47058824 G/G=0.27058825 C/C=0.25882354	Pr(chiSq=0.293,df=1) =0.655	Genotype Freq.
HAPMAP-GIH	174	174	G=0.64367819	C=0.35632184	C/G=0.43678162 G/G=0.42528737 C/C=0.13793103	Pr(chiSq=0.199,df=1) =0.752	Genotype Freq.
HAPMAP-LWK	180	180	G=0.85000002	C=0.15000001	G/G=0.71111113 C/G=0.27777779 C/C=0.01111111	Pr(chiSq=0.718,df=1) =0.403	Genotype Freq.
HAPMAP-MEX	100	100	G=0.67000002	C=0.33000001	C/G=0.50000000 G/G=0.41999999 C/C=0.08000000	Pr(chiSq=0.854,df=1) =0.371	Genotype Freq.
HAPMAP-MKK	282	282	G=0.84397161	C=0.15602838	G/G=0.73758864 C/G=0.21276596 C/C=0.04964539	Pr(chiSq=5.205,df=1) =0.025	Genotype Freq.
HAPMAP-TSI	176	176	G=0.54545456	C=0.45454547	C/G=0.43181819 G/G=0.32954547 C/C=0.23863636	Pr(chiSq=1.468,df=1) =0.251	Genotype Freq.

Submitted individual genotype for ss93999029

There is no individual genotype data for ss93999029.

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