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Submitted SNP(ss) Details: ss69280123           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP04561218
RefSNP(rs#)rs7849191
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss69280123|allelePos=65|len=129|taxid=9606|alleles='C/T'|mol=Genomic
 TCCTATTGCT AACTTGTTGT ACTAGTCACT TCCTGGTTTT TCCTGTACTG
 GTCTTCTGCT TCTA
 Y
 TTCTGTTCAT CTCC
 TTAAACTCCG AATGCCCCAA GTGAAAGTTA CCATTTTCTA CCCCTTAATT

  Submitted Frequency for ss69280123 back to top
There is no frequency submission for ss69280123.


  dbSNP summary of Genotypes for ss69280123 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120C=0.50000000C/T=0.53333336
T/T=0.23333333
C/C=0.23333333
Pr(chiSq=0.267,df=1)
=0.655		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090T=0.52222222
C=0.47777778C/T=0.46666667
T/T=0.28888890
C/C=0.24444444
Pr(chiSq=0.189,df=1)
=0.752		Genotype
Freq.
HapMap-JPT9090C=0.58888888
T=0.41111112C/T=0.60000002
C/C=0.28888890
T/T=0.11111111
Pr(chiSq=2.574,df=1)
=0.150		Genotype
Freq.
HapMap-YRI120120T=0.80833334
C=0.19166666T/T=0.61666667
C/T=0.38333333
Pr(chiSq=1.169,df=1)
=0.294		Genotype
Freq.

  Submitted individual genotype for ss69280123 back to top
There is no individual genotype data for ss69280123.

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