NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss69223957           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP01598036
RefSNP(rs#)rs2228611
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss69223957|allelePos=65|len=129|taxid=9606|alleles='T/C'|mol=Genomic
 CTGCCTGGCT GTTTTTAAAG TGTGCCCCAA ACATAATCCC GGACTATTCC
 TTACCTTCAA GAGA
 Y
 GGGTCATCAT CATA
 GATTGGTTTT GCTGAACCAG AAAAGAAGAG TTCGATATTC TTCTCGATGA

  Submitted Frequency for ss69223957 back to top
There is no frequency submission for ss69223957.


  dbSNP summary of Genotypes for ss69223957 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120T=0.50833333
C=0.49166667C/T=0.44999999
T/T=0.28333333
C/C=0.26666668
Pr(chiSq=0.597,df=1)
=0.479		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090C=0.73333335
T=0.26666668C/C=0.55555558
C/T=0.35555556
T/T=0.08888889
Pr(chiSq=0.372,df=1)
=0.584		Genotype
Freq.
HapMap-JPT9090C=0.61111110
T=0.38888890C/T=0.46666667
C/C=0.37777779
T/T=0.15555556
Pr(chiSq=0.015,df=1)
=1.000		Genotype
Freq.
HapMap-YRI120120T=0.53333336
C=0.46666667C/T=0.53333336
T/T=0.26666668
C/C=0.20000000
Pr(chiSq=0.306,df=1)
=0.584		Genotype
Freq.

  Submitted individual genotype for ss69223957 back to top
There is no individual genotype data for ss69223957.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement