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Submitted SNP(ss) Details: ss43969623           
Submitter
HandleABI
Submitter SNP IDhCV7714297
RefSNP(rs#)rs12708965
Submitted Batch IDxplore_hum_chr16_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss43969623|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 GAATCATGCT CTGTAAATAC CTGCTGGATG GTCGGGTGGG TCACAGGTCA GTGGTTGTGG
 GCAACTTGTG AAAGTTCAGT TGGATGCCAG ACCCAGCCAG CAGAGCTGAA TTCAACATGG
 AAGCCACTTT GTAAATGGCA GTGTCCGATG GGTTTCAGCC TGAAAATGGG AGCTGTGGCA
 ACACTGCCAG CTCCCCGCAG GGACCTGGCA CCCCTAGAAA TGGGGTTATC GTCTCAGCCG
 GCCTCAACCC ACTTTCTCGT CCCCAGCACC AAGAGGTTTG AGGACATGAT TGCACCCTTC
 Y
 GTCTGAATGA TGGCTTCAAG GATGAGGCCA CTGTCAACGA GATGCGGCGG GACTGCCCCT
 GGAAGATCTC AGATGAGGAG ATTACGAAGA ACAGAGTCAA GGTGCAGAGA GGGGTGGGGG
 TGGGAAACGC GACACATCAC TGGGTCAGGG ACGGGTGTCC TGCATGTCTT GAGCTCCCCC
 AGCCCCTCCC CTCGATCCTC CACCCTGCCT TCCACTCCGG CCCCTGAGGT ATCCTCAAGC
 CACAGTCGTT CAGGCTGATG GGTAACCCGG CTGTGGAACT CAGTGCTATC CTTGACCTGG

  Submitted Frequency for ss43969623 back to top
There is no frequency submission for ss43969623.


  dbSNP summary of Genotypes for ss43969623 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU226226C=0.98672569
T=0.01327434C/C=0.97345132
C/T=0.02654867
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686C=0.95348835
T=0.04651163C/C=0.90697676
C/T=0.09302326
Pr(chiSq=0.009,df=1)
=1.000		Genotype
Freq.
HapMap-JPT172172C=0.98837209
T=0.01162791C/C=0.97674417
C/T=0.02325581
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-YRI224224C=0.93750000
T=0.06250000C/C=0.87500000
C/T=0.12500000
Pr(chiSq=0.060,df=1)
=1.000		Genotype
Freq.
HAPMAP-ASW9898C=0.92857140
T=0.07142857C/C=0.85714287
C/T=0.14285715
Pr(chiSq=0.040,df=1)
=1.000		Genotype
Freq.
HAPMAP-GIH176176C=0.97727275
T=0.02272727C/C=0.95454544
C/T=0.04545455
Pr(chiSq=0.002,df=1)
=1.000		Genotype
Freq.
HAPMAP-LWK180180C=0.90555555
T=0.09444445C/C=0.82222223
C/T=0.16666667
T/T=0.01111111
Pr(chiSq=0.059,df=1)
=1.000		Genotype
Freq.
HAPMAP-MEX100100C=0.93000001
T=0.07000000C/C=0.86000001
C/T=0.14000000
Pr(chiSq=0.038,df=1)
=1.000		Genotype
Freq.
HAPMAP-MKK286286C=0.95804197
T=0.04195804C/C=0.91608393
C/T=0.08391608
Pr(chiSq=0.023,df=1)
=1.000		Genotype
Freq.
HAPMAP-TSI176176C=0.97159094
T=0.02840909C/C=0.94318181
C/T=0.05681818
Pr(chiSq=0.004,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss43969623 back to top
There is no individual genotype data for ss43969623.

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