NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss3859271           
Submitter
HandleSC_JCM
Submitter SNP IDAF000573.1_37492
RefSNP(rs#)rs1862942
Submitted Batch ID21-SEP-2001e
Submitted DateSep 25, 2001
Publication Cited[1] Clone overlap SNPs detected from the public human 19-Mar-2001 draft sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPSep 25 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodOverlap_SNPs_by_SsahaSNP
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
seqversion:AF000573.1position:37492seqversion:AC009289.8position:55306

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss3859271|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 GGAATGCGGT TCAGCATAGA TGTCTTTGAG GAGACCAGGG GCTACATCTT GGAGGTCTAT
 GGTGTCCACT TTGAGTTACC TGACCTTGGA CCAATTGGTA AATCTTCATT ACAAGCCTCT
 AAGCCTCGCT TGAGATGTAG GACTCAGATA ATTGCATGAA AGTTAAACAT CCTTCTCCCT
 TCGCTGTCTC ACTCAAACTT
 Y
 CACTTTTCTC TCTAGACAAA TTCTTCTCTA GACCAAGTGT CTTCCCAGAA AATATATGCA
 AAACAGAAAG CAACCCAAAC CAATCCATTA TAAATCTCTC TAGAATAGTA TACAGACATT
 GGAGATAAAG ACGGCATGTA ATAGATTTCT GGTTGCATAG TGTGTACAGG AAAGAATATA
 GAAGTTTGGG TTACTGTGGG

  Submitted Frequency for ss3859271 back to top
There is no frequency submission for ss3859271.


  dbSNP summary of Genotypes for ss3859271 back to top
No sufficient data to compute Hardy-weinberg probability for ss3859271.


  Submitted individual genotype for ss3859271 back to top
There is no individual genotype data for ss3859271.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement